BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00021676
         (475 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu...   170   1e-40
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   169   2e-40
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   165   3e-39
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g...   165   3e-39
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja...   163   1e-38

>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 867

 Score =  170 bits (430), Expect = 1e-40
 Identities = 86/153 (56%), Positives = 109/153 (71%), Gaps = 1/153 (0%)
 Frame = -2

Query: 471  CAQQGIARHWTVRGTPQQNGLAERMNRTLLEKARCLLSNANLGKEFWADAVAMACYLYNR 292
            C   GI RH+T+R TPQQNG++ERMN+ L+EK RC+LSNA LG++FWA+AV  A +L NR
Sbjct: 553  CQDCGIIRHFTIRKTPQQNGVSERMNKILVEKVRCMLSNAELGRKFWAEAVTYAQHLVNR 612

Query: 291  SPVPAIYCKTPYEVWTGKPA-DYGTLRVFGSSAYYHMNDSKLDSKAKKAIFXXXXXXXXX 115
             P  AI  KTP EVW+GKPA DY +L VFGS AYYH+ +SKLD +AKKA+F         
Sbjct: 613  LPSSAIDGKTPLEVWSGKPATDYDSLHVFGSIAYYHVIESKLDPRAKKALFMGFSPGVKG 672

Query: 114  XXLWCLENHKFLVSSEVTFDETSVLFFSRPEKA 16
              LWCLE  K ++S +VTFDE+++L    PE A
Sbjct: 673  YRLWCLEAKKTIISRDVTFDESAMLKKVNPEGA 705


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
           copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  169 bits (428), Expect = 2e-40
 Identities = 77/145 (53%), Positives = 101/145 (69%)
 Frame = -2

Query: 474 FCAQQGIARHWTVRGTPQQNGLAERMNRTLLEKARCLLSNANLGKEFWADAVAMACYLYN 295
           FC  +GIARH TVR TPQQNG+AERMN+TLLE+ARC+LSNA L + FWA+AV+ ACYL N
Sbjct: 552 FCKDEGIARHRTVRNTPQQNGVAERMNQTLLERARCMLSNAGLDRRFWAEAVSTACYLIN 611

Query: 294 RSPVPAIYCKTPYEVWTGKPADYGTLRVFGSSAYYHMNDSKLDSKAKKAIFXXXXXXXXX 115
           R P   I CKTP E+W+GK ADY  L+ FG +AYYH+++ KL+ +AKK +F         
Sbjct: 612 RGPHTGIQCKTPMEMWSGKAADYSNLKAFGCTAYYHVSEGKLEPRAKKGVFVGYGDGVKG 671

Query: 114 XXLWCLENHKFLVSSEVTFDETSVL 40
             +W     + ++S  V FDE+ +L
Sbjct: 672 FRIWSPAEKRVIMSRNVVFDESPLL 696


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  165 bits (418), Expect = 3e-39
 Identities = 82/150 (54%), Positives = 103/150 (68%)
 Frame = -2

Query: 474  FCAQQGIARHWTVRGTPQQNGLAERMNRTLLEKARCLLSNANLGKEFWADAVAMACYLYN 295
            +C  +GI RH+TV  TPQQNG+AERMNRT++ KARCLLSNA L K+FWA+AV+ ACYL N
Sbjct: 781  YCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLIN 840

Query: 294  RSPVPAIYCKTPYEVWTGKPADYGTLRVFGSSAYYHMNDSKLDSKAKKAIFXXXXXXXXX 115
            RSP  AI  KTP EVW+G PA+Y  LRVFG +AY H+++ KL+ +A K IF         
Sbjct: 841  RSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKG 900

Query: 114  XXLWCLENHKFLVSSEVTFDETSVLFFSRP 25
              LWC E  K ++S  V F E SV+   +P
Sbjct: 901  YKLWCPETKKVVISRNVVFHE-SVMLHDKP 929


>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
            gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
            Japonica Group]
          Length = 1601

 Score =  165 bits (418), Expect = 3e-39
 Identities = 82/150 (54%), Positives = 103/150 (68%)
 Frame = -2

Query: 474  FCAQQGIARHWTVRGTPQQNGLAERMNRTLLEKARCLLSNANLGKEFWADAVAMACYLYN 295
            +C  +GI RH+TV  TPQQNG+AERMNRT++ KARCLLSNA L K+FWA+AV+ ACYL N
Sbjct: 574  YCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLIN 633

Query: 294  RSPVPAIYCKTPYEVWTGKPADYGTLRVFGSSAYYHMNDSKLDSKAKKAIFXXXXXXXXX 115
            RSP  AI  KTP EVW+G PA+Y  LRVFG +AY H+++ KL+ +A K IF         
Sbjct: 634  RSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKG 693

Query: 114  XXLWCLENHKFLVSSEVTFDETSVLFFSRP 25
              LWC E  K ++S  V F E SV+   +P
Sbjct: 694  YKLWCPETKKVVISRNVVFHE-SVMLHDKP 722


>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
           gi|20087076|gb|AAM10749.1|AC112514_2 Putative
           retroelement [Oryza sativa Japonica Group]
          Length = 1225

 Score =  163 bits (413), Expect = 1e-38
 Identities = 81/150 (54%), Positives = 103/150 (68%)
 Frame = -2

Query: 474 FCAQQGIARHWTVRGTPQQNGLAERMNRTLLEKARCLLSNANLGKEFWADAVAMACYLYN 295
           +C  +GI RH+TV  TPQQNG+AERMNRT++ KARC+LSNA L K+FWA+AV+ ACYL N
Sbjct: 535 YCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLIN 594

Query: 294 RSPVPAIYCKTPYEVWTGKPADYGTLRVFGSSAYYHMNDSKLDSKAKKAIFXXXXXXXXX 115
           RSP  AI  KTP +VW+G PA+Y  LRVFG  AY H+++SKL+ +A K IF         
Sbjct: 595 RSPSYAIDKKTPIKVWSGSPANYSDLRVFGCIAYAHVDNSKLEPRAIKCIFLGYPSGVKG 654

Query: 114 XXLWCLENHKFLVSSEVTFDETSVLFFSRP 25
             LWC E  K ++S  V F E SV+   +P
Sbjct: 655 YKLWCPETKKVVISRNVVFHE-SVMLHDKP 683