BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00021653
         (781 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI38165.3| unnamed protein product [Vitis vinifera]              314   2e-83
ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containi...   314   2e-83
ref|XP_002310520.1| predicted protein [Populus trichocarpa] gi|2...   313   3e-83
ref|XP_003602631.1| Pentatricopeptide repeat-containing protein ...   307   2e-81
ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containi...   300   2e-79

>emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  314 bits (804), Expect = 2e-83
 Identities = 146/213 (68%), Positives = 177/213 (83%)
 Frame = -2

Query: 780  QNGKGSEALALFSRMLRSGERPDHVTMIGVLSACSHAGMVEEGQRYFYSMTQEHGLVPSK 601
            QNG G+EAL +F +ML  GE+PDHVTMIGVL ACSHAG+VEEG+ YF+SM +EHGL+P K
Sbjct: 435  QNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSM-EEHGLIPLK 493

Query: 600  DHYTCMVDLLGRAGCVREAKKFIESMPMEADTVLWGSLLASCKVHGNLEMGTHVAEKLLE 421
            DHYTCMVDLLGRAGC+ EAK  IE+MP+  D V+WGSLLA+CKVHGN+EMG H AEKLLE
Sbjct: 494  DHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLE 553

Query: 420  LDPSNSGPYVLLSNMYAELKQWGEVARVRTLMRRRGVVKQPGRSWIEINNQVHVFMVKDK 241
            +DP NSGPYVLLSNMYAEL +WG+V RVR LMR++GV KQPG SWIE+ ++VHVF+VKDK
Sbjct: 554  IDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVESRVHVFLVKDK 613

Query: 240  THPQRKEVYKLLNILAAQMKRTRYVLDVGHPES 142
            +HP RK++Y +L +L  QMKR  Y+ D    E+
Sbjct: 614  SHPHRKQIYSVLKMLTEQMKRVGYIPDANDFEA 646


>ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
            [Vitis vinifera]
          Length = 684

 Score =  314 bits (804), Expect = 2e-83
 Identities = 146/213 (68%), Positives = 177/213 (83%)
 Frame = -2

Query: 780  QNGKGSEALALFSRMLRSGERPDHVTMIGVLSACSHAGMVEEGQRYFYSMTQEHGLVPSK 601
            QNG G+EAL +F +ML  GE+PDHVTMIGVL ACSHAG+VEEG+ YF+SM +EHGL+P K
Sbjct: 465  QNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSM-EEHGLIPLK 523

Query: 600  DHYTCMVDLLGRAGCVREAKKFIESMPMEADTVLWGSLLASCKVHGNLEMGTHVAEKLLE 421
            DHYTCMVDLLGRAGC+ EAK  IE+MP+  D V+WGSLLA+CKVHGN+EMG H AEKLLE
Sbjct: 524  DHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLE 583

Query: 420  LDPSNSGPYVLLSNMYAELKQWGEVARVRTLMRRRGVVKQPGRSWIEINNQVHVFMVKDK 241
            +DP NSGPYVLLSNMYAEL +WG+V RVR LMR++GV KQPG SWIE+ ++VHVF+VKDK
Sbjct: 584  IDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVESRVHVFLVKDK 643

Query: 240  THPQRKEVYKLLNILAAQMKRTRYVLDVGHPES 142
            +HP RK++Y +L +L  QMKR  Y+ D    E+
Sbjct: 644  SHPHRKQIYSVLKMLTEQMKRVGYIPDANDFEA 676


>ref|XP_002310520.1| predicted protein [Populus trichocarpa] gi|222853423|gb|EEE90970.1|
            predicted protein [Populus trichocarpa]
          Length = 710

 Score =  313 bits (802), Expect = 3e-83
 Identities = 145/223 (65%), Positives = 180/223 (80%)
 Frame = -2

Query: 780  QNGKGSEALALFSRMLRSGERPDHVTMIGVLSACSHAGMVEEGQRYFYSMTQEHGLVPSK 601
            QNG G EAL LF +ML SGE+PDHVTMIG L ACSHAG+VEEG+RYF+SMT+EHGL+P K
Sbjct: 474  QNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVK 533

Query: 600  DHYTCMVDLLGRAGCVREAKKFIESMPMEADTVLWGSLLASCKVHGNLEMGTHVAEKLLE 421
            DHYTCMVDLLGRAGC+ EAK  IESMP + D V+W SLL++CKVH N+ +G +VAEK+ E
Sbjct: 534  DHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSACKVHRNITLGKYVAEKIFE 593

Query: 420  LDPSNSGPYVLLSNMYAELKQWGEVARVRTLMRRRGVVKQPGRSWIEINNQVHVFMVKDK 241
            +DP++SGPYVLL+NMY+EL +WG+   VR LMRRRGVVKQPG SWI+I + VHVFMVKDK
Sbjct: 594  IDPTSSGPYVLLANMYSELGRWGDAVSVRKLMRRRGVVKQPGCSWIDIQSNVHVFMVKDK 653

Query: 240  THPQRKEVYKLLNILAAQMKRTRYVLDVGHPESKTYKEPMEMD 112
             HPQ+KE+Y +L +L   M++  YV D    E+  Y+EP E++
Sbjct: 654  RHPQKKEIYSILKLLTKHMRQAGYVPDASDHEA--YEEPSELE 694


>ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355491679|gb|AES72882.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  307 bits (786), Expect = 2e-81
 Identities = 147/224 (65%), Positives = 178/224 (79%)
 Frame = -2

Query: 780  QNGKGSEALALFSRMLRSGERPDHVTMIGVLSACSHAGMVEEGQRYFYSMTQEHGLVPSK 601
            QNG G+EAL +F  ML SGERPDHVTMIGVLSACSHAG+VEEG+ YF SMT EHGLVP K
Sbjct: 469  QNGYGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGLVPVK 528

Query: 600  DHYTCMVDLLGRAGCVREAKKFIESMPMEADTVLWGSLLASCKVHGNLEMGTHVAEKLLE 421
            DHYTCMVDLLGRAGC+ EA   I++MPME D V+WGSLLA+CKVHGN+ +G +VAE+LLE
Sbjct: 529  DHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAACKVHGNITLGKYVAERLLE 588

Query: 420  LDPSNSGPYVLLSNMYAELKQWGEVARVRTLMRRRGVVKQPGRSWIEINNQVHVFMVKDK 241
            +DP NSGPYVLLSNMYAEL +W +V RVR  MR+ GV+KQPG SWI I + +HVFMVKDK
Sbjct: 589  IDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQMGVIKQPGCSWISIQSHLHVFMVKDK 648

Query: 240  THPQRKEVYKLLNILAAQMKRTRYVLDVGHPESKTYKEPMEMDI 109
             HP +K++Y +L IL  QMKR  YV +    + + Y+E  + ++
Sbjct: 649  RHPHKKDIYLILKILTEQMKRVGYVPEA--DDDEPYEEESDSEL 690


>ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like
            [Glycine max]
          Length = 705

 Score =  300 bits (768), Expect = 2e-79
 Identities = 148/243 (60%), Positives = 183/243 (75%)
 Frame = -2

Query: 780  QNGKGSEALALFSRMLRSGERPDHVTMIGVLSACSHAGMVEEGQRYFYSMTQEHGLVPSK 601
            QNG G+ AL +F +ML SG++PDHVTMIGVLSACSHAG+VEEG+RYF+SM  E GL P K
Sbjct: 469  QNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRTELGLAPMK 528

Query: 600  DHYTCMVDLLGRAGCVREAKKFIESMPMEADTVLWGSLLASCKVHGNLEMGTHVAEKLLE 421
            DH+TCMVDLLGRAGC+ EA   I++MPM+ D V+WGSLLA+CKVHGN+E+G +VAEKL+E
Sbjct: 529  DHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSLLAACKVHGNIELGKYVAEKLME 588

Query: 420  LDPSNSGPYVLLSNMYAELKQWGEVARVRTLMRRRGVVKQPGRSWIEINNQVHVFMVKDK 241
            +DP NSGPYVLLSNMYAEL +W +V RVR  MR+RGV+KQPG SWIEI ++VHVFMVKDK
Sbjct: 589  IDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQRGVIKQPGCSWIEIQSRVHVFMVKDK 648

Query: 240  THPQRKEVYKLLNILAAQMKRTRYVLDVGHPESKTYKEPMEMDIREGCIAE*FSQMVVQF 61
             HP +K+++ +L  L  QMK   YV               E D  E C  E  S++V+ F
Sbjct: 649  RHPLKKDIHLVLKFLTEQMKWAGYV--------------PEADDDEICEEESDSELVLHF 694

Query: 60   ETD 52
            E +
Sbjct: 695  EME 697