BLASTX nr result
ID: Coptis25_contig00021601
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00021601 (464 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002529988.1| conserved hypothetical protein [Ricinus comm... 82 2e-42 gb|AAF61377.1|AF133675_1 retinoblastoma-related protein 1 [Popul... 83 2e-41 ref|XP_002297730.1| hypothetical protein POPTRDRAFT_547794 [Popu... 83 6e-41 ref|XP_004142479.1| PREDICTED: retinoblastoma-related protein-li... 83 5e-40 ref|XP_004157544.1| PREDICTED: retinoblastoma-related protein-li... 83 6e-40 >ref|XP_002529988.1| conserved hypothetical protein [Ricinus communis] gi|254789790|sp|B9SVG9.1|RBR_RICCO RecName: Full=Retinoblastoma-related protein gi|223530511|gb|EEF32393.1| conserved hypothetical protein [Ricinus communis] Length = 1020 Score = 82.4 bits (202), Expect(3) = 2e-42 Identities = 39/47 (82%), Positives = 43/47 (91%) Frame = -2 Query: 259 NTKMAPTPGSTAMTTAKWL*TVISPLPSKPSAQLERFLSSCDRDITN 119 N++MA TP STAMTTAKWL TVISPLPSKPS QLERFL+SCDRD+TN Sbjct: 409 NSRMAATPVSTAMTTAKWLRTVISPLPSKPSPQLERFLASCDRDVTN 455 Score = 71.2 bits (173), Expect(3) = 2e-42 Identities = 39/55 (70%), Positives = 44/55 (80%), Gaps = 2/55 (3%) Frame = -3 Query: 459 ELDERVFVDDEQSLLGTGSLSEH--SNIGTKRKFDVVSSLAKTITSPLSPPRSPA 301 ELDERVF+++E SLLG+GSLS S GTKRKFD +SS KTITSPLSP RSPA Sbjct: 344 ELDERVFINEEDSLLGSGSLSGGAISVTGTKRKFDQISSPTKTITSPLSPHRSPA 398 Score = 64.7 bits (156), Expect(3) = 2e-42 Identities = 30/36 (83%), Positives = 33/36 (91%) Frame = -1 Query: 110 RRAHIILEAIFPRIALGERCLTGTLQSANLMDSIWA 3 RRAHIILEAIFP ALGERC+TG+LQS NLMD+IWA Sbjct: 459 RRAHIILEAIFPSNALGERCVTGSLQSTNLMDNIWA 494 >gb|AAF61377.1|AF133675_1 retinoblastoma-related protein 1 [Populus tremula x Populus tremuloides] Length = 1035 Score = 82.8 bits (203), Expect(3) = 2e-41 Identities = 39/47 (82%), Positives = 43/47 (91%) Frame = -2 Query: 259 NTKMAPTPGSTAMTTAKWL*TVISPLPSKPSAQLERFLSSCDRDITN 119 N+KMA TP STAMTTAKWL T+ISPLPSKPSAQLERFL SCD+D+TN Sbjct: 425 NSKMAATPVSTAMTTAKWLRTIISPLPSKPSAQLERFLVSCDKDVTN 471 Score = 71.6 bits (174), Expect(3) = 2e-41 Identities = 42/62 (67%), Positives = 50/62 (80%), Gaps = 2/62 (3%) Frame = -3 Query: 459 ELDERVFVDDEQSLLGTGSLSEHS-NI-GTKRKFDVVSSLAKTITSPLSPPRSPAFSPAK 286 ELDERVF+++E SLLG+GS+S S NI G KRKFD++SS KTITSPLSP RSPA S A Sbjct: 360 ELDERVFINEEDSLLGSGSVSAGSLNITGAKRKFDLISSPTKTITSPLSPHRSPA-SHAN 418 Query: 285 GL 280 G+ Sbjct: 419 GI 420 Score = 60.8 bits (146), Expect(3) = 2e-41 Identities = 28/36 (77%), Positives = 32/36 (88%) Frame = -1 Query: 110 RRAHIILEAIFPRIALGERCLTGTLQSANLMDSIWA 3 RRA IILEAIFP +LGERC+TG+LQS NLMD+IWA Sbjct: 475 RRAQIILEAIFPSSSLGERCVTGSLQSTNLMDNIWA 510 >ref|XP_002297730.1| hypothetical protein POPTRDRAFT_547794 [Populus trichocarpa] gi|254789789|sp|B9GLX8.1|RBR_POPTR RecName: Full=Retinoblastoma-related protein gi|222844988|gb|EEE82535.1| hypothetical protein POPTRDRAFT_547794 [Populus trichocarpa] Length = 1035 Score = 82.8 bits (203), Expect(3) = 6e-41 Identities = 39/47 (82%), Positives = 43/47 (91%) Frame = -2 Query: 259 NTKMAPTPGSTAMTTAKWL*TVISPLPSKPSAQLERFLSSCDRDITN 119 N+KMA TP STAMTTAKWL T+ISPLPSKPSAQLERFL SCD+D+TN Sbjct: 425 NSKMAATPVSTAMTTAKWLRTIISPLPSKPSAQLERFLVSCDKDVTN 471 Score = 71.6 bits (174), Expect(3) = 6e-41 Identities = 42/62 (67%), Positives = 50/62 (80%), Gaps = 2/62 (3%) Frame = -3 Query: 459 ELDERVFVDDEQSLLGTGSLSEHS-NI-GTKRKFDVVSSLAKTITSPLSPPRSPAFSPAK 286 ELDERVF+++E SLLG+GS+S S NI G KRKFD++SS KTITSPLSP RSPA S A Sbjct: 360 ELDERVFINEEDSLLGSGSVSAGSLNITGAKRKFDLISSPTKTITSPLSPHRSPA-SHAN 418 Query: 285 GL 280 G+ Sbjct: 419 GI 420 Score = 58.9 bits (141), Expect(3) = 6e-41 Identities = 27/36 (75%), Positives = 31/36 (86%) Frame = -1 Query: 110 RRAHIILEAIFPRIALGERCLTGTLQSANLMDSIWA 3 RRA IILEAIFP +LGERC+ G+LQS NLMD+IWA Sbjct: 475 RRAQIILEAIFPSSSLGERCVNGSLQSTNLMDNIWA 510 >ref|XP_004142479.1| PREDICTED: retinoblastoma-related protein-like [Cucumis sativus] Length = 1024 Score = 83.2 bits (204), Expect(3) = 5e-40 Identities = 38/48 (79%), Positives = 44/48 (91%) Frame = -2 Query: 262 GNTKMAPTPGSTAMTTAKWL*TVISPLPSKPSAQLERFLSSCDRDITN 119 GNTK+A TP STAMTTAKWL TVISPLP+KPS ++ERFL+SCDRD+TN Sbjct: 413 GNTKIAATPVSTAMTTAKWLRTVISPLPAKPSVEMERFLASCDRDVTN 460 Score = 63.9 bits (154), Expect(3) = 5e-40 Identities = 29/36 (80%), Positives = 33/36 (91%) Frame = -1 Query: 110 RRAHIILEAIFPRIALGERCLTGTLQSANLMDSIWA 3 RRAHIILEAIFP ALGERC+ G+LQSA+LMD+IWA Sbjct: 464 RRAHIILEAIFPNTALGERCIAGSLQSASLMDNIWA 499 Score = 63.2 bits (152), Expect(3) = 5e-40 Identities = 35/55 (63%), Positives = 42/55 (76%), Gaps = 2/55 (3%) Frame = -3 Query: 459 ELDERVFVDDEQSLLGTGSLSEHSNI--GTKRKFDVVSSLAKTITSPLSPPRSPA 301 +LDERVFV+DE SLLG+GSLS + G KRK D + S A+TITSP+SP RSPA Sbjct: 349 QLDERVFVNDEDSLLGSGSLSAGAVTMGGIKRKLDSMCSPARTITSPMSPLRSPA 403 >ref|XP_004157544.1| PREDICTED: retinoblastoma-related protein-like [Cucumis sativus] Length = 1125 Score = 83.2 bits (204), Expect(3) = 6e-40 Identities = 38/48 (79%), Positives = 44/48 (91%) Frame = -2 Query: 262 GNTKMAPTPGSTAMTTAKWL*TVISPLPSKPSAQLERFLSSCDRDITN 119 GNTK+A TP STAMTTAKWL TVISPLP+KPS ++ERFL+SCDRD+TN Sbjct: 514 GNTKIAATPVSTAMTTAKWLRTVISPLPAKPSVEMERFLASCDRDVTN 561 Score = 63.5 bits (153), Expect(3) = 6e-40 Identities = 29/36 (80%), Positives = 32/36 (88%) Frame = -1 Query: 110 RRAHIILEAIFPRIALGERCLTGTLQSANLMDSIWA 3 RRAHIILEAIFP ALGERC+ G LQSA+LMD+IWA Sbjct: 565 RRAHIILEAIFPNTALGERCIAGNLQSASLMDNIWA 600 Score = 63.2 bits (152), Expect(3) = 6e-40 Identities = 35/55 (63%), Positives = 42/55 (76%), Gaps = 2/55 (3%) Frame = -3 Query: 459 ELDERVFVDDEQSLLGTGSLSEHSNI--GTKRKFDVVSSLAKTITSPLSPPRSPA 301 +LDERVFV+DE SLLG+GSLS + G KRK D + S A+TITSP+SP RSPA Sbjct: 450 QLDERVFVNDEDSLLGSGSLSAGAVTMGGIKRKLDSMCSPARTITSPMSPLRSPA 504