BLASTX nr result

ID: Coptis25_contig00021601 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00021601
         (464 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002529988.1| conserved hypothetical protein [Ricinus comm...    82   2e-42
gb|AAF61377.1|AF133675_1 retinoblastoma-related protein 1 [Popul...    83   2e-41
ref|XP_002297730.1| hypothetical protein POPTRDRAFT_547794 [Popu...    83   6e-41
ref|XP_004142479.1| PREDICTED: retinoblastoma-related protein-li...    83   5e-40
ref|XP_004157544.1| PREDICTED: retinoblastoma-related protein-li...    83   6e-40

>ref|XP_002529988.1| conserved hypothetical protein [Ricinus communis]
           gi|254789790|sp|B9SVG9.1|RBR_RICCO RecName:
           Full=Retinoblastoma-related protein
           gi|223530511|gb|EEF32393.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 1020

 Score = 82.4 bits (202), Expect(3) = 2e-42
 Identities = 39/47 (82%), Positives = 43/47 (91%)
 Frame = -2

Query: 259 NTKMAPTPGSTAMTTAKWL*TVISPLPSKPSAQLERFLSSCDRDITN 119
           N++MA TP STAMTTAKWL TVISPLPSKPS QLERFL+SCDRD+TN
Sbjct: 409 NSRMAATPVSTAMTTAKWLRTVISPLPSKPSPQLERFLASCDRDVTN 455



 Score = 71.2 bits (173), Expect(3) = 2e-42
 Identities = 39/55 (70%), Positives = 44/55 (80%), Gaps = 2/55 (3%)
 Frame = -3

Query: 459 ELDERVFVDDEQSLLGTGSLSEH--SNIGTKRKFDVVSSLAKTITSPLSPPRSPA 301
           ELDERVF+++E SLLG+GSLS    S  GTKRKFD +SS  KTITSPLSP RSPA
Sbjct: 344 ELDERVFINEEDSLLGSGSLSGGAISVTGTKRKFDQISSPTKTITSPLSPHRSPA 398



 Score = 64.7 bits (156), Expect(3) = 2e-42
 Identities = 30/36 (83%), Positives = 33/36 (91%)
 Frame = -1

Query: 110 RRAHIILEAIFPRIALGERCLTGTLQSANLMDSIWA 3
           RRAHIILEAIFP  ALGERC+TG+LQS NLMD+IWA
Sbjct: 459 RRAHIILEAIFPSNALGERCVTGSLQSTNLMDNIWA 494


>gb|AAF61377.1|AF133675_1 retinoblastoma-related protein 1 [Populus tremula x Populus
           tremuloides]
          Length = 1035

 Score = 82.8 bits (203), Expect(3) = 2e-41
 Identities = 39/47 (82%), Positives = 43/47 (91%)
 Frame = -2

Query: 259 NTKMAPTPGSTAMTTAKWL*TVISPLPSKPSAQLERFLSSCDRDITN 119
           N+KMA TP STAMTTAKWL T+ISPLPSKPSAQLERFL SCD+D+TN
Sbjct: 425 NSKMAATPVSTAMTTAKWLRTIISPLPSKPSAQLERFLVSCDKDVTN 471



 Score = 71.6 bits (174), Expect(3) = 2e-41
 Identities = 42/62 (67%), Positives = 50/62 (80%), Gaps = 2/62 (3%)
 Frame = -3

Query: 459 ELDERVFVDDEQSLLGTGSLSEHS-NI-GTKRKFDVVSSLAKTITSPLSPPRSPAFSPAK 286
           ELDERVF+++E SLLG+GS+S  S NI G KRKFD++SS  KTITSPLSP RSPA S A 
Sbjct: 360 ELDERVFINEEDSLLGSGSVSAGSLNITGAKRKFDLISSPTKTITSPLSPHRSPA-SHAN 418

Query: 285 GL 280
           G+
Sbjct: 419 GI 420



 Score = 60.8 bits (146), Expect(3) = 2e-41
 Identities = 28/36 (77%), Positives = 32/36 (88%)
 Frame = -1

Query: 110 RRAHIILEAIFPRIALGERCLTGTLQSANLMDSIWA 3
           RRA IILEAIFP  +LGERC+TG+LQS NLMD+IWA
Sbjct: 475 RRAQIILEAIFPSSSLGERCVTGSLQSTNLMDNIWA 510


>ref|XP_002297730.1| hypothetical protein POPTRDRAFT_547794 [Populus trichocarpa]
           gi|254789789|sp|B9GLX8.1|RBR_POPTR RecName:
           Full=Retinoblastoma-related protein
           gi|222844988|gb|EEE82535.1| hypothetical protein
           POPTRDRAFT_547794 [Populus trichocarpa]
          Length = 1035

 Score = 82.8 bits (203), Expect(3) = 6e-41
 Identities = 39/47 (82%), Positives = 43/47 (91%)
 Frame = -2

Query: 259 NTKMAPTPGSTAMTTAKWL*TVISPLPSKPSAQLERFLSSCDRDITN 119
           N+KMA TP STAMTTAKWL T+ISPLPSKPSAQLERFL SCD+D+TN
Sbjct: 425 NSKMAATPVSTAMTTAKWLRTIISPLPSKPSAQLERFLVSCDKDVTN 471



 Score = 71.6 bits (174), Expect(3) = 6e-41
 Identities = 42/62 (67%), Positives = 50/62 (80%), Gaps = 2/62 (3%)
 Frame = -3

Query: 459 ELDERVFVDDEQSLLGTGSLSEHS-NI-GTKRKFDVVSSLAKTITSPLSPPRSPAFSPAK 286
           ELDERVF+++E SLLG+GS+S  S NI G KRKFD++SS  KTITSPLSP RSPA S A 
Sbjct: 360 ELDERVFINEEDSLLGSGSVSAGSLNITGAKRKFDLISSPTKTITSPLSPHRSPA-SHAN 418

Query: 285 GL 280
           G+
Sbjct: 419 GI 420



 Score = 58.9 bits (141), Expect(3) = 6e-41
 Identities = 27/36 (75%), Positives = 31/36 (86%)
 Frame = -1

Query: 110 RRAHIILEAIFPRIALGERCLTGTLQSANLMDSIWA 3
           RRA IILEAIFP  +LGERC+ G+LQS NLMD+IWA
Sbjct: 475 RRAQIILEAIFPSSSLGERCVNGSLQSTNLMDNIWA 510


>ref|XP_004142479.1| PREDICTED: retinoblastoma-related protein-like [Cucumis sativus]
          Length = 1024

 Score = 83.2 bits (204), Expect(3) = 5e-40
 Identities = 38/48 (79%), Positives = 44/48 (91%)
 Frame = -2

Query: 262 GNTKMAPTPGSTAMTTAKWL*TVISPLPSKPSAQLERFLSSCDRDITN 119
           GNTK+A TP STAMTTAKWL TVISPLP+KPS ++ERFL+SCDRD+TN
Sbjct: 413 GNTKIAATPVSTAMTTAKWLRTVISPLPAKPSVEMERFLASCDRDVTN 460



 Score = 63.9 bits (154), Expect(3) = 5e-40
 Identities = 29/36 (80%), Positives = 33/36 (91%)
 Frame = -1

Query: 110 RRAHIILEAIFPRIALGERCLTGTLQSANLMDSIWA 3
           RRAHIILEAIFP  ALGERC+ G+LQSA+LMD+IWA
Sbjct: 464 RRAHIILEAIFPNTALGERCIAGSLQSASLMDNIWA 499



 Score = 63.2 bits (152), Expect(3) = 5e-40
 Identities = 35/55 (63%), Positives = 42/55 (76%), Gaps = 2/55 (3%)
 Frame = -3

Query: 459 ELDERVFVDDEQSLLGTGSLSEHSNI--GTKRKFDVVSSLAKTITSPLSPPRSPA 301
           +LDERVFV+DE SLLG+GSLS  +    G KRK D + S A+TITSP+SP RSPA
Sbjct: 349 QLDERVFVNDEDSLLGSGSLSAGAVTMGGIKRKLDSMCSPARTITSPMSPLRSPA 403


>ref|XP_004157544.1| PREDICTED: retinoblastoma-related protein-like [Cucumis sativus]
          Length = 1125

 Score = 83.2 bits (204), Expect(3) = 6e-40
 Identities = 38/48 (79%), Positives = 44/48 (91%)
 Frame = -2

Query: 262 GNTKMAPTPGSTAMTTAKWL*TVISPLPSKPSAQLERFLSSCDRDITN 119
           GNTK+A TP STAMTTAKWL TVISPLP+KPS ++ERFL+SCDRD+TN
Sbjct: 514 GNTKIAATPVSTAMTTAKWLRTVISPLPAKPSVEMERFLASCDRDVTN 561



 Score = 63.5 bits (153), Expect(3) = 6e-40
 Identities = 29/36 (80%), Positives = 32/36 (88%)
 Frame = -1

Query: 110 RRAHIILEAIFPRIALGERCLTGTLQSANLMDSIWA 3
           RRAHIILEAIFP  ALGERC+ G LQSA+LMD+IWA
Sbjct: 565 RRAHIILEAIFPNTALGERCIAGNLQSASLMDNIWA 600



 Score = 63.2 bits (152), Expect(3) = 6e-40
 Identities = 35/55 (63%), Positives = 42/55 (76%), Gaps = 2/55 (3%)
 Frame = -3

Query: 459 ELDERVFVDDEQSLLGTGSLSEHSNI--GTKRKFDVVSSLAKTITSPLSPPRSPA 301
           +LDERVFV+DE SLLG+GSLS  +    G KRK D + S A+TITSP+SP RSPA
Sbjct: 450 QLDERVFVNDEDSLLGSGSLSAGAVTMGGIKRKLDSMCSPARTITSPMSPLRSPA 504


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