BLASTX nr result
ID: Coptis25_contig00021601
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00021601
(464 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002529988.1| conserved hypothetical protein [Ricinus comm... 82 2e-42
gb|AAF61377.1|AF133675_1 retinoblastoma-related protein 1 [Popul... 83 2e-41
ref|XP_002297730.1| hypothetical protein POPTRDRAFT_547794 [Popu... 83 6e-41
ref|XP_004142479.1| PREDICTED: retinoblastoma-related protein-li... 83 5e-40
ref|XP_004157544.1| PREDICTED: retinoblastoma-related protein-li... 83 6e-40
>ref|XP_002529988.1| conserved hypothetical protein [Ricinus communis]
gi|254789790|sp|B9SVG9.1|RBR_RICCO RecName:
Full=Retinoblastoma-related protein
gi|223530511|gb|EEF32393.1| conserved hypothetical
protein [Ricinus communis]
Length = 1020
Score = 82.4 bits (202), Expect(3) = 2e-42
Identities = 39/47 (82%), Positives = 43/47 (91%)
Frame = -2
Query: 259 NTKMAPTPGSTAMTTAKWL*TVISPLPSKPSAQLERFLSSCDRDITN 119
N++MA TP STAMTTAKWL TVISPLPSKPS QLERFL+SCDRD+TN
Sbjct: 409 NSRMAATPVSTAMTTAKWLRTVISPLPSKPSPQLERFLASCDRDVTN 455
Score = 71.2 bits (173), Expect(3) = 2e-42
Identities = 39/55 (70%), Positives = 44/55 (80%), Gaps = 2/55 (3%)
Frame = -3
Query: 459 ELDERVFVDDEQSLLGTGSLSEH--SNIGTKRKFDVVSSLAKTITSPLSPPRSPA 301
ELDERVF+++E SLLG+GSLS S GTKRKFD +SS KTITSPLSP RSPA
Sbjct: 344 ELDERVFINEEDSLLGSGSLSGGAISVTGTKRKFDQISSPTKTITSPLSPHRSPA 398
Score = 64.7 bits (156), Expect(3) = 2e-42
Identities = 30/36 (83%), Positives = 33/36 (91%)
Frame = -1
Query: 110 RRAHIILEAIFPRIALGERCLTGTLQSANLMDSIWA 3
RRAHIILEAIFP ALGERC+TG+LQS NLMD+IWA
Sbjct: 459 RRAHIILEAIFPSNALGERCVTGSLQSTNLMDNIWA 494
>gb|AAF61377.1|AF133675_1 retinoblastoma-related protein 1 [Populus tremula x Populus
tremuloides]
Length = 1035
Score = 82.8 bits (203), Expect(3) = 2e-41
Identities = 39/47 (82%), Positives = 43/47 (91%)
Frame = -2
Query: 259 NTKMAPTPGSTAMTTAKWL*TVISPLPSKPSAQLERFLSSCDRDITN 119
N+KMA TP STAMTTAKWL T+ISPLPSKPSAQLERFL SCD+D+TN
Sbjct: 425 NSKMAATPVSTAMTTAKWLRTIISPLPSKPSAQLERFLVSCDKDVTN 471
Score = 71.6 bits (174), Expect(3) = 2e-41
Identities = 42/62 (67%), Positives = 50/62 (80%), Gaps = 2/62 (3%)
Frame = -3
Query: 459 ELDERVFVDDEQSLLGTGSLSEHS-NI-GTKRKFDVVSSLAKTITSPLSPPRSPAFSPAK 286
ELDERVF+++E SLLG+GS+S S NI G KRKFD++SS KTITSPLSP RSPA S A
Sbjct: 360 ELDERVFINEEDSLLGSGSVSAGSLNITGAKRKFDLISSPTKTITSPLSPHRSPA-SHAN 418
Query: 285 GL 280
G+
Sbjct: 419 GI 420
Score = 60.8 bits (146), Expect(3) = 2e-41
Identities = 28/36 (77%), Positives = 32/36 (88%)
Frame = -1
Query: 110 RRAHIILEAIFPRIALGERCLTGTLQSANLMDSIWA 3
RRA IILEAIFP +LGERC+TG+LQS NLMD+IWA
Sbjct: 475 RRAQIILEAIFPSSSLGERCVTGSLQSTNLMDNIWA 510
>ref|XP_002297730.1| hypothetical protein POPTRDRAFT_547794 [Populus trichocarpa]
gi|254789789|sp|B9GLX8.1|RBR_POPTR RecName:
Full=Retinoblastoma-related protein
gi|222844988|gb|EEE82535.1| hypothetical protein
POPTRDRAFT_547794 [Populus trichocarpa]
Length = 1035
Score = 82.8 bits (203), Expect(3) = 6e-41
Identities = 39/47 (82%), Positives = 43/47 (91%)
Frame = -2
Query: 259 NTKMAPTPGSTAMTTAKWL*TVISPLPSKPSAQLERFLSSCDRDITN 119
N+KMA TP STAMTTAKWL T+ISPLPSKPSAQLERFL SCD+D+TN
Sbjct: 425 NSKMAATPVSTAMTTAKWLRTIISPLPSKPSAQLERFLVSCDKDVTN 471
Score = 71.6 bits (174), Expect(3) = 6e-41
Identities = 42/62 (67%), Positives = 50/62 (80%), Gaps = 2/62 (3%)
Frame = -3
Query: 459 ELDERVFVDDEQSLLGTGSLSEHS-NI-GTKRKFDVVSSLAKTITSPLSPPRSPAFSPAK 286
ELDERVF+++E SLLG+GS+S S NI G KRKFD++SS KTITSPLSP RSPA S A
Sbjct: 360 ELDERVFINEEDSLLGSGSVSAGSLNITGAKRKFDLISSPTKTITSPLSPHRSPA-SHAN 418
Query: 285 GL 280
G+
Sbjct: 419 GI 420
Score = 58.9 bits (141), Expect(3) = 6e-41
Identities = 27/36 (75%), Positives = 31/36 (86%)
Frame = -1
Query: 110 RRAHIILEAIFPRIALGERCLTGTLQSANLMDSIWA 3
RRA IILEAIFP +LGERC+ G+LQS NLMD+IWA
Sbjct: 475 RRAQIILEAIFPSSSLGERCVNGSLQSTNLMDNIWA 510
>ref|XP_004142479.1| PREDICTED: retinoblastoma-related protein-like [Cucumis sativus]
Length = 1024
Score = 83.2 bits (204), Expect(3) = 5e-40
Identities = 38/48 (79%), Positives = 44/48 (91%)
Frame = -2
Query: 262 GNTKMAPTPGSTAMTTAKWL*TVISPLPSKPSAQLERFLSSCDRDITN 119
GNTK+A TP STAMTTAKWL TVISPLP+KPS ++ERFL+SCDRD+TN
Sbjct: 413 GNTKIAATPVSTAMTTAKWLRTVISPLPAKPSVEMERFLASCDRDVTN 460
Score = 63.9 bits (154), Expect(3) = 5e-40
Identities = 29/36 (80%), Positives = 33/36 (91%)
Frame = -1
Query: 110 RRAHIILEAIFPRIALGERCLTGTLQSANLMDSIWA 3
RRAHIILEAIFP ALGERC+ G+LQSA+LMD+IWA
Sbjct: 464 RRAHIILEAIFPNTALGERCIAGSLQSASLMDNIWA 499
Score = 63.2 bits (152), Expect(3) = 5e-40
Identities = 35/55 (63%), Positives = 42/55 (76%), Gaps = 2/55 (3%)
Frame = -3
Query: 459 ELDERVFVDDEQSLLGTGSLSEHSNI--GTKRKFDVVSSLAKTITSPLSPPRSPA 301
+LDERVFV+DE SLLG+GSLS + G KRK D + S A+TITSP+SP RSPA
Sbjct: 349 QLDERVFVNDEDSLLGSGSLSAGAVTMGGIKRKLDSMCSPARTITSPMSPLRSPA 403
>ref|XP_004157544.1| PREDICTED: retinoblastoma-related protein-like [Cucumis sativus]
Length = 1125
Score = 83.2 bits (204), Expect(3) = 6e-40
Identities = 38/48 (79%), Positives = 44/48 (91%)
Frame = -2
Query: 262 GNTKMAPTPGSTAMTTAKWL*TVISPLPSKPSAQLERFLSSCDRDITN 119
GNTK+A TP STAMTTAKWL TVISPLP+KPS ++ERFL+SCDRD+TN
Sbjct: 514 GNTKIAATPVSTAMTTAKWLRTVISPLPAKPSVEMERFLASCDRDVTN 561
Score = 63.5 bits (153), Expect(3) = 6e-40
Identities = 29/36 (80%), Positives = 32/36 (88%)
Frame = -1
Query: 110 RRAHIILEAIFPRIALGERCLTGTLQSANLMDSIWA 3
RRAHIILEAIFP ALGERC+ G LQSA+LMD+IWA
Sbjct: 565 RRAHIILEAIFPNTALGERCIAGNLQSASLMDNIWA 600
Score = 63.2 bits (152), Expect(3) = 6e-40
Identities = 35/55 (63%), Positives = 42/55 (76%), Gaps = 2/55 (3%)
Frame = -3
Query: 459 ELDERVFVDDEQSLLGTGSLSEHSNI--GTKRKFDVVSSLAKTITSPLSPPRSPA 301
+LDERVFV+DE SLLG+GSLS + G KRK D + S A+TITSP+SP RSPA
Sbjct: 450 QLDERVFVNDEDSLLGSGSLSAGAVTMGGIKRKLDSMCSPARTITSPMSPLRSPA 504