BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00021589
         (945 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274803.1| PREDICTED: pentatricopeptide repeat-containi...   279   2e-91
ref|XP_002531295.1| pentatricopeptide repeat-containing protein,...   263   9e-85
ref|XP_003539487.1| PREDICTED: pentatricopeptide repeat-containi...   255   1e-83
ref|XP_003541958.1| PREDICTED: pentatricopeptide repeat-containi...   255   1e-83
ref|XP_004135653.1| PREDICTED: pentatricopeptide repeat-containi...   249   7e-82

>ref|XP_002274803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18970
           [Vitis vinifera] gi|298204853|emb|CBI34160.3| unnamed
           protein product [Vitis vinifera]
          Length = 471

 Score =  279 bits (713), Expect(2) = 2e-91
 Identities = 138/209 (66%), Positives = 164/209 (78%)
 Frame = -3

Query: 688 MYSKCGCLKSALVVFNRMKMKNILTWTSMISGLAFHGQGKEVMNILEAMQVTNIRPNAVT 509
           MYSKCGCL SAL +F  MK +N+LTWT+MI+GLA HG+GKE + +L+ M    ++PNAVT
Sbjct: 260 MYSKCGCLGSALCIFWGMKERNVLTWTAMITGLARHGRGKEALELLDEMVAYGVKPNAVT 319

Query: 508 FTSLLFACGHAGLVNEGLVLFYSMGSRFGVTPNIQHYGCIVDLLGRAGRLQEAYNFVIEM 329
           FTSL  AC HAGLV EGL LF+SM S+FGVTP IQHYGCIVDLLGRAG L+EAY+FV  M
Sbjct: 320 FTSLFSACCHAGLVEEGLQLFHSMRSKFGVTPGIQHYGCIVDLLGRAGHLKEAYDFVRGM 379

Query: 328 PLQPDKILWRSLLAACKIHGNSTMGEKVGKHLLQLQEESGTVDTVFRCEDFIALSNVYAS 149
           P++PD ILWRSLL+ACK+H +  MGE+VGK LLQLQ +    D V   EDFIALSNVYAS
Sbjct: 380 PVEPDAILWRSLLSACKVHRDVVMGEEVGKLLLQLQPQQSFADLVAASEDFIALSNVYAS 439

Query: 148 TGRWKDLEMVREKMKDKCIQAEPGYSSVQ 62
             RW+D+E VRE MK K I+ +PG SSVQ
Sbjct: 440 AERWEDVETVREAMKVKGIETKPGCSSVQ 468



 Score = 84.0 bits (206), Expect(2) = 2e-91
 Identities = 48/87 (55%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
 Frame = -1

Query: 945 WNAMISGYCSQKKGIEYFAHAALKLFCGMLRCGNNGVNPNDTTMVSVLSACARIGDLVTG 766
           WNAMI+GYCSQ+  +  +A  AL LF  ML     GV P DTTMV VLSA +++G L TG
Sbjct: 175 WNAMITGYCSQRGKVVCYARDALVLFRAML-VDACGVKPTDTTMVCVLSAASQLGVLETG 233

Query: 765 SCVHGRIEKIVYVP-HDVYIGTCLVDI 688
             VHG IEK V  P +DV++GT LVD+
Sbjct: 234 VGVHGYIEKTVLAPANDVFVGTGLVDM 260


>ref|XP_002531295.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223529128|gb|EEF31108.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 313

 Score =  263 bits (672), Expect(2) = 9e-85
 Identities = 123/211 (58%), Positives = 161/211 (76%)
 Frame = -3

Query: 688 MYSKCGCLKSALVVFNRMKMKNILTWTSMISGLAFHGQGKEVMNILEAMQVTNIRPNAVT 509
           MYSKCGCL SA+  F  MK+KN LTWT+M +GLA HG+GKE + +L+ M  + I+PNAVT
Sbjct: 94  MYSKCGCLDSAVKFFVEMKLKNKLTWTAMATGLAIHGKGKETLELLDGMGASGIKPNAVT 153

Query: 508 FTSLLFACGHAGLVNEGLVLFYSMGSRFGVTPNIQHYGCIVDLLGRAGRLQEAYNFVIEM 329
           FTSL  AC H+GLV EGL LF++M  +FG+ P IQHYGCIVDLLG+ G L+EAY F+  M
Sbjct: 154 FTSLFSACCHSGLVEEGLHLFHNMKGKFGIEPGIQHYGCIVDLLGKGGHLKEAYEFIAGM 213

Query: 328 PLQPDKILWRSLLAACKIHGNSTMGEKVGKHLLQLQEESGTVDTVFRCEDFIALSNVYAS 149
           P++PD ILWR LL+ACK+HG+  MGEKV K LL LQ E  +V++    ED++ALSNVYAS
Sbjct: 214 PMEPDAILWRCLLSACKVHGDVVMGEKVAKILLHLQPEKNSVESDDSSEDYVALSNVYAS 273

Query: 148 TGRWKDLEMVREKMKDKCIQAEPGYSSVQLV 56
             RW+D+E++R++MK K ++ +PG S VQ +
Sbjct: 274 AERWEDVEILRKEMKVKRLETKPGASLVQAI 304



 Score = 77.8 bits (190), Expect(2) = 9e-85
 Identities = 45/89 (50%), Positives = 61/89 (68%), Gaps = 3/89 (3%)
 Frame = -1

Query: 945 WNAMISGYCSQKKGIEYFAHAALKLFCGMLR--CGNNGVNPNDTTMVSVLSACARIGDLV 772
           WNAMI+G+ SQ++  +  A AAL LF  M+   C      PND TMVSVLSA +++G L 
Sbjct: 9   WNAMITGFSSQREKAKDSAVAALMLFRDMVVDVCAEK---PNDITMVSVLSASSQLGVLE 65

Query: 771 TGSCVHGRIEKIVYVP-HDVYIGTCLVDI 688
            G+C+HG IEK + VP +D++IGT LVD+
Sbjct: 66  CGACIHGYIEKTICVPQNDIFIGTGLVDM 94


>ref|XP_003539487.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18970-like
            [Glycine max]
          Length = 595

 Score =  255 bits (652), Expect(2) = 1e-83
 Identities = 127/211 (60%), Positives = 153/211 (72%)
 Frame = -3

Query: 688  MYSKCGCLKSALVVFNRMKMKNILTWTSMISGLAFHGQGKEVMNILEAMQVTNIRPNAVT 509
            MYSKCGCL SAL VF RM  KNI+TWT+M +GLA HG+GK+ + +L  M    ++PN  T
Sbjct: 382  MYSKCGCLDSALSVFWRMNQKNIMTWTAMTTGLAIHGKGKQSLEVLYKMGAYGVKPNEAT 441

Query: 508  FTSLLFACGHAGLVNEGLVLFYSMGSRFGVTPNIQHYGCIVDLLGRAGRLQEAYNFVIEM 329
            FTS L AC H GLV EGL LF  M   FGV P IQHYGCIVDLLGRAG+L+EAY+F+++M
Sbjct: 442  FTSFLSACCHGGLVEEGLQLFLEMKRTFGVMPQIQHYGCIVDLLGRAGKLEEAYDFIMQM 501

Query: 328  PLQPDKILWRSLLAACKIHGNSTMGEKVGKHLLQLQEESGTVDTVFRCEDFIALSNVYAS 149
            P+ PD ++WRSLLAAC IHG+  MGEKVGK LLQL+E S       + ED+IALSNVYA 
Sbjct: 502  PINPDAVIWRSLLAACNIHGDVVMGEKVGKFLLQLEEWSSAESP--KSEDYIALSNVYAL 559

Query: 148  TGRWKDLEMVREKMKDKCIQAEPGYSSVQLV 56
              +W D+E VR KMK K I  + G S+VQ V
Sbjct: 560  AEKWDDVETVRIKMKAKSILNKAGSSAVQTV 590



 Score = 82.0 bits (201), Expect(2) = 1e-83
 Identities = 47/87 (54%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
 Frame = -1

Query: 945 WNAMISGYCSQKKGIEYFAHAALKLFCGMLRCGNNGVNPNDTTMVSVLSACARIGDLVTG 766
           WNAMI+GY S K+G + +A  AL LF  ML    +G+ P  TT+VSVLSA ++IG L TG
Sbjct: 297 WNAMITGYSSLKEGNKKYALNALYLFIDML-IDVSGIKPTATTIVSVLSAVSQIGMLETG 355

Query: 765 SCVHGRIEKIVYVPH-DVYIGTCLVDI 688
           +C+HG  EK V  P  DV+IGT LVD+
Sbjct: 356 ACIHGFAEKTVCTPEDDVFIGTGLVDM 382


>ref|XP_003541958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g18970-like [Glycine max]
          Length = 477

 Score =  255 bits (651), Expect(2) = 1e-83
 Identities = 124/211 (58%), Positives = 154/211 (72%)
 Frame = -3

Query: 688 MYSKCGCLKSALVVFNRMKMKNILTWTSMISGLAFHGQGKEVMNILEAMQVTNIRPNAVT 509
           MYSKCGCL SAL VF RM  KNILTWT+M + LA HG+GK+ + +L  M    ++PN  T
Sbjct: 262 MYSKCGCLDSALSVFWRMNQKNILTWTAMTTSLAIHGKGKQALEVLYKMGAYGVKPNEAT 321

Query: 508 FTSLLFACGHAGLVNEGLVLFYSMGSRFGVTPNIQHYGCIVDLLGRAGRLQEAYNFVIEM 329
           FTS L AC H GLV EGL+LF+ M   FG+ P I+HYGCIVDLLGRAG L+EAY+F++ M
Sbjct: 322 FTSFLSACCHGGLVEEGLILFHEMKRTFGMMPQIKHYGCIVDLLGRAGNLEEAYDFIMRM 381

Query: 328 PLQPDKILWRSLLAACKIHGNSTMGEKVGKHLLQLQEESGTVDTVFRCEDFIALSNVYAS 149
           P+ PD ++WRSLL ACKIHG+  MGEKVGK LLQL+E S       + ED+IALSNVYA 
Sbjct: 382 PINPDAVIWRSLLGACKIHGDVVMGEKVGKFLLQLEEWSSAESP--KSEDYIALSNVYAL 439

Query: 148 TGRWKDLEMVREKMKDKCIQAEPGYSSVQLV 56
             +W D+E+VR+ MK K I ++ G S+VQ V
Sbjct: 440 AEKWDDVEIVRKTMKSKGILSKAGSSAVQTV 470



 Score = 82.4 bits (202), Expect(2) = 1e-83
 Identities = 47/87 (54%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
 Frame = -1

Query: 945 WNAMISGYCSQKKGIEYFAHAALKLFCGMLRCGNNGVNPNDTTMVSVLSACARIGDLVTG 766
           WNAMI+GY SQK+G + +A  AL LF  ML    + + P  TT+VSVLSA ++IG L TG
Sbjct: 177 WNAMITGYSSQKEGNKKYALNALSLFIDML-VDVSVIKPTGTTIVSVLSAVSQIGMLETG 235

Query: 765 SCVHGRIEKIVYVPH-DVYIGTCLVDI 688
           +C+HG  EK V  P  DV+IGT LVD+
Sbjct: 236 ACIHGFAEKTVCTPEDDVFIGTGLVDM 262


>ref|XP_004135653.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g18970-like [Cucumis sativus]
           gi|449522917|ref|XP_004168472.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At3g18970-like [Cucumis sativus]
          Length = 318

 Score =  249 bits (636), Expect(2) = 7e-82
 Identities = 122/210 (58%), Positives = 157/210 (74%), Gaps = 1/210 (0%)
 Frame = -3

Query: 688 MYSKCGCLKSALVVFNRMKMKNILTWTSMISGLAFHGQGKEVMNILEAMQVTNIRPNAVT 509
           MYSKCG L SA  VF +MK KN+LTWTSM +GLA HG+GKE + +L+AM    ++PNAVT
Sbjct: 97  MYSKCGLLNSASSVFKQMKQKNVLTWTSMATGLAVHGRGKEALELLDAMGAHGVKPNAVT 156

Query: 508 FTSLLFACGHAGLVNEGLVLFYSMGSRFGVTPNIQHYGCIVDLLGRAGRLQEAYNFVIEM 329
           FTSLL AC H GL+ EGL LF  M  +FGV P +QHYGCIVDLLGR+G L+EAY  ++EM
Sbjct: 157 FTSLLSACCHGGLIEEGLHLFRVMERKFGVVPQMQHYGCIVDLLGRSGHLREAYKLILEM 216

Query: 328 PLQPDKILWRSLLAACKIHGNSTMGEKVGKHLLQLQ-EESGTVDTVFRCEDFIALSNVYA 152
           P++PD +LWRSLL++C +HG+  MGE+VGK L++ Q  ES   +     EDF+ALSNVYA
Sbjct: 217 PMEPDGVLWRSLLSSCMLHGDVEMGERVGKLLVERQGGESFDDEWCVGSEDFVALSNVYA 276

Query: 151 STGRWKDLEMVREKMKDKCIQAEPGYSSVQ 62
           S  RW D+E +R++MK K I+ + G SS+Q
Sbjct: 277 SVERWDDVEALRDEMKIKGIENKAGCSSLQ 306



 Score = 82.0 bits (201), Expect(2) = 7e-82
 Identities = 49/89 (55%), Positives = 61/89 (68%), Gaps = 3/89 (3%)
 Frame = -1

Query: 945 WNAMISGYCSQK-KGIEYFAHAALKLFCGML-RCGNNGVNPNDTTMVSVLSACARIGDLV 772
           WNAMI+GYCSQ  K  + +A  AL+LF GML    N  V P DTTMV +LSA +++G L 
Sbjct: 9   WNAMIAGYCSQGGKVSQKYARDALELFRGMLVESTNFEVKPTDTTMVCILSAASQLGMLE 68

Query: 771 TGSCVHGRIEKIVYVPH-DVYIGTCLVDI 688
           TGSCVH  I+K V  P  DV+IGT LV++
Sbjct: 69  TGSCVHAYIKKTVDSPEKDVFIGTGLVNM 97