BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00021568
         (312 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...   126   4e-35
emb|CBI26820.3| unnamed protein product [Vitis vinifera]              126   4e-35
emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]   126   4e-35
ref|XP_002311536.1| rna-dependent RNA polymerase [Populus tricho...   121   6e-33
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   117   1e-32

>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  126 bits (317), Expect(2) = 4e-35
 Identities = 52/77 (67%), Positives = 63/77 (81%)
 Frame = -3

Query: 232  KSFNSRKDVEAIKYAARSIKKEARTWFEEKSSTSGTQEDNVYAKVSAWYRITYHPDYWGC 53
            KSF+ RKD EAI  A +S++KEARTWF +  S + ++ D+VYAK SAWY +TYHPDYWGC
Sbjct: 1012 KSFDRRKDAEAIGLAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYHVTYHPDYWGC 1071

Query: 52   YNEGMNRSHFLSFPWCV 2
            YNEGM+R HFLSFPWCV
Sbjct: 1072 YNEGMDRDHFLSFPWCV 1088



 Score = 46.6 bits (109), Expect(2) = 4e-35
 Identities = 21/31 (67%), Positives = 26/31 (83%)
 Frame = -2

Query: 311  KLGNLMDYYEIKSEAEILCGSIMKLKKIFQQ 219
            KLGNLMDYY IK+E+EIL GSIM++ K F +
Sbjct: 986  KLGNLMDYYGIKTESEILSGSIMRMSKSFDR 1016


>emb|CBI26820.3| unnamed protein product [Vitis vinifera]
          Length = 919

 Score =  126 bits (317), Expect(2) = 4e-35
 Identities = 52/77 (67%), Positives = 63/77 (81%)
 Frame = -3

Query: 232  KSFNSRKDVEAIKYAARSIKKEARTWFEEKSSTSGTQEDNVYAKVSAWYRITYHPDYWGC 53
            KSF+ RKD EAI  A +S++KEARTWF +  S + ++ D+VYAK SAWY +TYHPDYWGC
Sbjct: 810  KSFDRRKDAEAIGLAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYHVTYHPDYWGC 869

Query: 52   YNEGMNRSHFLSFPWCV 2
            YNEGM+R HFLSFPWCV
Sbjct: 870  YNEGMDRDHFLSFPWCV 886



 Score = 46.6 bits (109), Expect(2) = 4e-35
 Identities = 21/31 (67%), Positives = 26/31 (83%)
 Frame = -2

Query: 311 KLGNLMDYYEIKSEAEILCGSIMKLKKIFQQ 219
           KLGNLMDYY IK+E+EIL GSIM++ K F +
Sbjct: 784 KLGNLMDYYGIKTESEILSGSIMRMSKSFDR 814


>emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]
          Length = 654

 Score =  126 bits (317), Expect(2) = 4e-35
 Identities = 52/77 (67%), Positives = 63/77 (81%)
 Frame = -3

Query: 232 KSFNSRKDVEAIKYAARSIKKEARTWFEEKSSTSGTQEDNVYAKVSAWYRITYHPDYWGC 53
           KSF+ RKD EAI  A +S++KEARTWF +  S + ++ D+VYAK SAWY +TYHPDYWGC
Sbjct: 545 KSFDRRKDAEAIGLAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYHVTYHPDYWGC 604

Query: 52  YNEGMNRSHFLSFPWCV 2
           YNEGM+R HFLSFPWCV
Sbjct: 605 YNEGMDRDHFLSFPWCV 621



 Score = 46.6 bits (109), Expect(2) = 4e-35
 Identities = 21/31 (67%), Positives = 26/31 (83%)
 Frame = -2

Query: 311 KLGNLMDYYEIKSEAEILCGSIMKLKKIFQQ 219
           KLGNLMDYY IK+E+EIL GSIM++ K F +
Sbjct: 519 KLGNLMDYYGIKTESEILSGSIMRMSKSFDR 549


>ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1133

 Score =  121 bits (303), Expect(2) = 6e-33
 Identities = 52/77 (67%), Positives = 60/77 (77%)
 Frame = -3

Query: 232  KSFNSRKDVEAIKYAARSIKKEARTWFEEKSSTSGTQEDNVYAKVSAWYRITYHPDYWGC 53
            KSF  ++D EAI  A RS+KKEAR+WF EK S   +Q D+V AK SAWY +TYH +YWGC
Sbjct: 1022 KSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHNYWGC 1081

Query: 52   YNEGMNRSHFLSFPWCV 2
            YNEGMNR HFLSFPWCV
Sbjct: 1082 YNEGMNRDHFLSFPWCV 1098



 Score = 44.7 bits (104), Expect(2) = 6e-33
 Identities = 20/29 (68%), Positives = 24/29 (82%)
 Frame = -2

Query: 311  KLGNLMDYYEIKSEAEILCGSIMKLKKIF 225
            KLGNLM+YY IK+EAE+L GS MK+ K F
Sbjct: 996  KLGNLMEYYGIKTEAELLSGSFMKMSKSF 1024


>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Glycine max]
          Length = 1125

 Score =  117 bits (294), Expect(2) = 1e-32
 Identities = 51/78 (65%), Positives = 58/78 (74%), Gaps = 1/78 (1%)
 Frame = -3

Query: 232  KSFNSRKDVEAIKYAARSIKKEARTWFEEKSSTS-GTQEDNVYAKVSAWYRITYHPDYWG 56
            KSFN R+D EAI  A RS++KEAR WF E SS    +   +VYAK SAWY +TYHP YWG
Sbjct: 1019 KSFNKRRDAEAINMAVRSLRKEARAWFNENSSGDVDSGSSDVYAKASAWYHVTYHPSYWG 1078

Query: 55   CYNEGMNRSHFLSFPWCV 2
            CYNEGMNR H+LSF WCV
Sbjct: 1079 CYNEGMNRDHYLSFSWCV 1096



 Score = 47.0 bits (110), Expect(2) = 1e-32
 Identities = 22/31 (70%), Positives = 26/31 (83%)
 Frame = -2

Query: 311  KLGNLMDYYEIKSEAEILCGSIMKLKKIFQQ 219
            KLGNLMDYY IK+EAEIL G+IMK+ K F +
Sbjct: 993  KLGNLMDYYGIKTEAEILGGNIMKMSKSFNK 1023