BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00021340
         (238 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsi...    85   5e-15
gb|AAC62796.1| contains similarity to reverse transcriptase (Pfa...    84   1e-14
gb|ABA97642.2| retrotransposon protein, putative, Ty3-gypsy subc...    84   1e-14
gb|ABB47013.1| retrotransposon protein, putative, Ty3-gypsy subc...    83   2e-14
emb|CAE01899.2| OSJNBa0059D20.5 [Oryza sativa Japonica Group]          83   2e-14

>gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 38/78 (48%), Positives = 51/78 (65%)
 Frame = -3

Query: 236 IREVEFTDWLSXXXXXXXXXXXVRMCVDFTDVNVECPKDSYPILRVDELVDRTAGFKIFS 57
           IREV++ DWL+            R+C+DFTD+N  CPKDS+P+  +D LV+ TAG ++ S
Sbjct: 493 IREVQYPDWLANTVVVKKKNGKDRVCIDFTDLNKACPKDSFPLPHIDRLVESTAGNELLS 552

Query: 56  FMDASMGYNQVAMYGPDQ 3
           FMDA  GYNQ+ M   DQ
Sbjct: 553 FMDAFSGYNQIMMNPEDQ 570


>gb|AAC62796.1| contains similarity to reverse transcriptase (Pfam: PF00078 rvt,
           E=4.3e-08) [Arabidopsis thaliana]
           gi|7267135|emb|CAB80803.1| AT4g03800 [Arabidopsis
           thaliana]
          Length = 637

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 36/78 (46%), Positives = 52/78 (66%)
 Frame = -3

Query: 236 IREVEFTDWLSXXXXXXXXXXXVRMCVDFTDVNVECPKDSYPILRVDELVDRTAGFKIFS 57
           IREV++ DW++            R+C+DFTD+N  CPKDS+P+  +D LV+ TAG ++ +
Sbjct: 370 IREVQYPDWVAITVVVKKKNGKDRVCIDFTDLNKACPKDSFPLPHIDRLVESTAGNELLT 429

Query: 56  FMDASMGYNQVAMYGPDQ 3
           FMDA +GYNQ+ M   DQ
Sbjct: 430 FMDAFLGYNQIMMNPEDQ 447


>gb|ABA97642.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 818

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 38/78 (48%), Positives = 52/78 (66%)
 Frame = -3

Query: 236 IREVEFTDWLSXXXXXXXXXXXVRMCVDFTDVNVECPKDSYPILRVDELVDRTAGFKIFS 57
           IREV + +WLS            RMCVDFTD+N  CPKD +P+ R+D+LVD TAG ++ S
Sbjct: 421 IREVLYPEWLSNPTMVWKANGKWRMCVDFTDLNKACPKDHFPLPRIDQLVDSTAGCELLS 480

Query: 56  FMDASMGYNQVAMYGPDQ 3
           F+DA  GY+Q++M   D+
Sbjct: 481 FLDAYSGYHQISMAKEDE 498


>gb|ABB47013.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1475

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 36/77 (46%), Positives = 51/77 (66%)
 Frame = -3

Query: 236 IREVEFTDWLSXXXXXXXXXXXVRMCVDFTDVNVECPKDSYPILRVDELVDRTAGFKIFS 57
           I+E++  +WL+            RMCVDFTD+N  CPKD +P+ R+D+LVD TAG ++ S
Sbjct: 686 IQEIDHPEWLANPVLVRKSNDKWRMCVDFTDLNKACPKDDFPLPRIDQLVDSTAGCELMS 745

Query: 56  FMDASMGYNQVAMYGPD 6
           F+DA  GY+Q+ M  PD
Sbjct: 746 FLDAYSGYHQIQMNPPD 762


>emb|CAE01899.2| OSJNBa0059D20.5 [Oryza sativa Japonica Group]
          Length = 832

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 36/77 (46%), Positives = 51/77 (66%)
 Frame = -3

Query: 236 IREVEFTDWLSXXXXXXXXXXXVRMCVDFTDVNVECPKDSYPILRVDELVDRTAGFKIFS 57
           I+E+++ +WL+            RMCVDFTD+N  CPKD +P+ R+D+LVD TAG K+ S
Sbjct: 22  IQEIDYPEWLANRVLVQKSNGKWRMCVDFTDLNKACPKDDFPLSRIDQLVDSTAGCKLMS 81

Query: 56  FMDASMGYNQVAMYGPD 6
           F+DA  GY+Q+ M   D
Sbjct: 82  FLDAYSGYHQIHMSPAD 98