BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00021316
         (310 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containi...   145   4e-33
ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containi...   144   1e-32
ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containi...   141   6e-32
ref|XP_002532904.1| pentatricopeptide repeat-containing protein,...   134   6e-30
ref|NP_189568.1| pentatricopeptide repeat-containing protein [Ar...   131   5e-29

>ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  145 bits (365), Expect = 4e-33
 Identities = 67/103 (65%), Positives = 82/103 (79%)
 Frame = -2

Query: 309 FFEMQRNSVFSDNFTYPFLLKACSGQFGLTQVEMIHAHIEKFGFSTNIFVPNSLICSYSK 130
           FF+MQ+N +F DNFTYPFLLKAC+G   L  V MIHAH+EKFGF  +IFVPNSLI SYS+
Sbjct: 108 FFQMQKNGLFPDNFTYPFLLKACTGPSSLPLVRMIHAHVEKFGFYGDIFVPNSLIDSYSR 167

Query: 129 CGSDGVDIARRVFKAMTERDVVSWNSMVAGLIKCGELQEGIRL 1
           CGS G+D A  +F AM ERDVV+WNSM+ GL++CGEL+   +L
Sbjct: 168 CGSAGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELEGACKL 210


>ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  144 bits (362), Expect = 1e-32
 Identities = 67/103 (65%), Positives = 81/103 (78%)
 Frame = -2

Query: 309 FFEMQRNSVFSDNFTYPFLLKACSGQFGLTQVEMIHAHIEKFGFSTNIFVPNSLICSYSK 130
           FF+MQ+N +F DNFTYPFLLKACSG   L  V MIHAH+EK GF  +IFVPNSLI SYS+
Sbjct: 108 FFQMQKNGLFPDNFTYPFLLKACSGPSSLPLVRMIHAHVEKIGFYGDIFVPNSLIDSYSR 167

Query: 129 CGSDGVDIARRVFKAMTERDVVSWNSMVAGLIKCGELQEGIRL 1
           CG+ G+D A  +F AM ERDVV+WNSM+ GL++CGELQ   +L
Sbjct: 168 CGNAGLDGAMSLFLAMEERDVVTWNSMIGGLVRCGELQGACKL 210


>ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
           [Vitis vinifera]
          Length = 594

 Score =  141 bits (355), Expect = 6e-32
 Identities = 69/103 (66%), Positives = 79/103 (76%)
 Frame = -2

Query: 309 FFEMQRNSVFSDNFTYPFLLKACSGQFGLTQVEMIHAHIEKFGFSTNIFVPNSLICSYSK 130
           FFEMQ + V +DNFTYPFLLKACSG+  +  VEMIHA +EK GF  +IFVPNSLI SY K
Sbjct: 103 FFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFK 162

Query: 129 CGSDGVDIARRVFKAMTERDVVSWNSMVAGLIKCGELQEGIRL 1
           CG DGV  AR+VF+ M ERD VSWNSM+ GL+K GEL E  RL
Sbjct: 163 CGLDGVAAARKVFEVMAERDTVSWNSMIGGLVKVGELGEARRL 205



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 37/103 (35%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
 Frame = -2

Query: 303 EMQRNSVFSDNFTYPFLLKAC--SGQFGLTQVEMIHAHIEKFGFSTNIFVPNSLICSYSK 130
           +M+   +  D+ T   +L AC  SG  GL +   +HA IE+  F  +  V N+LI  Y+K
Sbjct: 301 QMEEAGLKFDDGTVISILSACAVSGLLGLGK--RVHASIERTRFKCSTPVSNALIDMYAK 358

Query: 129 CGSDGVDIARRVFKAMTERDVVSWNSMVAGLIKCGELQEGIRL 1
           CGS  ++ A  +F  M  +DVVSWN+++ GL   G  ++ ++L
Sbjct: 359 CGS--LENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQL 399


>ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223527338|gb|EEF29484.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 604

 Score =  134 bits (338), Expect = 6e-30
 Identities = 61/103 (59%), Positives = 81/103 (78%)
 Frame = -2

Query: 309 FFEMQRNSVFSDNFTYPFLLKACSGQFGLTQVEMIHAHIEKFGFSTNIFVPNSLICSYSK 130
           FF+MQ+N +F+DNFTYPFLLKAC+G+  L  V+MIH H+EK+GF  ++FVPNSLI SYSK
Sbjct: 109 FFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSK 168

Query: 129 CGSDGVDIARRVFKAMTERDVVSWNSMVAGLIKCGELQEGIRL 1
           CG  GV+ A ++F  M E+D+VSWNSM+ GL+K G+L    +L
Sbjct: 169 CGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKL 211



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 35/101 (34%), Positives = 56/101 (55%)
 Frame = -2

Query: 303 EMQRNSVFSDNFTYPFLLKACSGQFGLTQVEMIHAHIEKFGFSTNIFVPNSLICSYSKCG 124
           +M+   +  D+ T   +L AC+    L   + +HA I+K     ++ V N+L+  Y+KCG
Sbjct: 307 QMEAAGLKPDDGTLISILAACAESGLLVLGKKVHASIKKIRIKCSVNVSNALVDMYAKCG 366

Query: 123 SDGVDIARRVFKAMTERDVVSWNSMVAGLIKCGELQEGIRL 1
              VD A  +F  M+ RD+VSWN M+ GL   G  ++ I+L
Sbjct: 367 R--VDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQL 405


>ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g29230 gi|9293916|dbj|BAB01819.1| unnamed protein
           product [Arabidopsis thaliana]
           gi|332644032|gb|AEE77553.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 600

 Score =  131 bits (330), Expect = 5e-29
 Identities = 63/103 (61%), Positives = 80/103 (77%)
 Frame = -2

Query: 309 FFEMQRNSVFSDNFTYPFLLKACSGQFGLTQVEMIHAHIEKFGFSTNIFVPNSLICSYSK 130
           F EMQR  +F+DNFTYPFLLKACSGQ  L  V+M+H HIEK G S++I+VPN+LI  YS+
Sbjct: 105 FSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSR 164

Query: 129 CGSDGVDIARRVFKAMTERDVVSWNSMVAGLIKCGELQEGIRL 1
           CG  GV  A ++F+ M+ERD VSWNSM+ GL+K GEL++  RL
Sbjct: 165 CGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRL 207