BLASTX nr result
ID: Coptis25_contig00021189
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00021189
(995 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 43 5e-09
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga... 42 6e-09
ref|NP_194638.1| Ribonuclease H-like protein [Arabidopsis thalia... 36 4e-08
ref|NP_001176302.1| Os11g0106066 [Oryza sativa Japonica Group] g... 44 4e-08
ref|XP_002522452.1| nucleic acid binding protein, putative [Rici... 43 9e-08
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1374
Score = 43.1 bits (100), Expect(3) = 5e-09
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Frame = -2
Query: 988 SFFWKSIHRVFNTISEGVLWNIHNGQSISVMKDPWLICNGKP----RTLKELGVINPELE 821
SF WKSI+ I +G+ I NG++I+V DPW+ KP + +K +++
Sbjct: 905 SFAWKSIYEAQVLIKQGIRAVIGNGETINVWTDPWI--GAKPAKAAQAVKRSHLVSQYAA 962
Query: 820 NM--NVSGLFKSDGSCWDPELLALHFEPFIRQKILEVVVRPLG 698
N V L DG W+ L++L F ++ IL +RP G
Sbjct: 963 NSIHVVKDLLLPDGRDWNWNLVSLLFPDNTQENIL--ALRPGG 1003
Score = 33.5 bits (75), Expect(3) = 5e-09
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 5/102 (4%)
Frame = -1
Query: 695 SKDKMIWCEDRSGSLTVKSVY----SMLNHSKWEGEXXXXXSKTI-AHIWKAKLPANTLL 531
++D+ W RSG +VKS Y ++N E I IWK +P
Sbjct: 1006 TRDRFTWEYSRSGHYSVKSGYWVMTEIINQRNNPQEVLQPSLDPIFQQIWKLDVPPKIHH 1065
Query: 530 FI*KLYMMGLPMGDKLAPKKVPGD*SCPFCYKTIETDIHLLF 405
F+ + L + LA + + + SC C ET HLLF
Sbjct: 1066 FLWRCVNNCLSVASNLAYRHLAREKSCVRCPSHGETVNHLLF 1107
Score = 30.0 bits (66), Expect(3) = 5e-09
Identities = 20/85 (23%), Positives = 42/85 (49%)
Frame = -2
Query: 403 LLFECEWSRALWFASDLGLRMVGPEKGTIKS*VEKFMSWSHSS*EEISYAGVLACCILNN 224
LLF+C ++R W S L G ++ + +S S EE + ++ IL
Sbjct: 1105 LLFKCPFARLTWAISPLPAPPGGEWAESLFRNMHHVLSVHKSQPEESDHHALIPW-ILWR 1163
Query: 223 MWRIRNEIKFEQKQANRDRVLRRSS 149
+W+ RN++ F+ ++ +V+ +++
Sbjct: 1164 LWKNRNDLVFKGREFTAPQVILKAT 1188
>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1369
Score = 42.4 bits (98), Expect(3) = 6e-09
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Frame = -1
Query: 689 DKMIWCEDRSGSLTVKSVY--SMLNHSKW-EGEXXXXXSKTIAHIWKAKLPANTLLFI*K 519
D+ +W ++G TV+S Y +L K K IWKAK+P LF K
Sbjct: 1010 DQWMWMMSKNGQFTVRSAYYHELLEDRKTGPSTSRGPNLKLWQKIWKAKIPPKVKLFSWK 1069
Query: 518 LYMMGLPMGDKLAPKKVPGD*SCPFCYKTIETDIHLLF 405
GL + + + + D +CP C + ET HL++
Sbjct: 1070 AIHNGLAVYTNMRKRGMNIDGACPRCGEKEETTEHLIW 1107
Score = 37.4 bits (85), Expect(3) = 6e-09
Identities = 36/132 (27%), Positives = 59/132 (44%)
Frame = -2
Query: 403 LLFECEWSRALWFASDLGLRMVGPEKGTIKS*VEKFMSWSHSS*EEISYAGVLACCILNN 224
L++ C+ S W+ S L + E G+ + VE + +H E + L I N
Sbjct: 1105 LIWGCDESSRAWYISPLRIHTGNIEAGSFRIWVESLLD-THKDTEWWA----LFWMICWN 1159
Query: 223 MWRIRNEIKFEQKQANRDRVLRRSSVEALKCIQAFKEERVSADPNLDMQLNVYPNAFADI 44
+W RN+ FE+K+ V+ R A++ + F+EE P LN + N ++
Sbjct: 1160 IWLGRNKWVFEKKKLAFQEVVER----AVRGVMEFEEECAHTSP--VETLNTHENGWSVP 1213
Query: 43 PNECVVIRFDAA 8
P V + DAA
Sbjct: 1214 PVGMVKLNVDAA 1225
Score = 26.6 bits (57), Expect(3) = 6e-09
Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 13/106 (12%)
Frame = -2
Query: 988 SFFWKSIHRVFNTISEGVLWNIHNGQSISVMKDPWLICNGKPRTLKELGVINPELENMNV 809
SF KSI I +G+ I +G+ ++ DPW+ P LE ++
Sbjct: 914 SFTCKSILSARAVIQKGMCRVIGDGRDTTIWGDPWV----------------PSLERYSI 957
Query: 808 S---GLFKSDG----------SCWDPELLALHFEPFIRQKILEVVV 710
+ G+ + DG W+ ELL F+P+ I + V
Sbjct: 958 AATEGVSEDDGPQKVCELISNDRWNVELLNTLFQPWESTAIQRIPV 1003
>ref|NP_194638.1| Ribonuclease H-like protein [Arabidopsis thaliana]
gi|4972055|emb|CAB43923.1| putative protein [Arabidopsis
thaliana] gi|7269807|emb|CAB79667.1| putative protein
[Arabidopsis thaliana] gi|67633766|gb|AAY78807.1|
putative reverse transcriptase/RNA-dependent DNA
polymerase [Arabidopsis thaliana]
gi|332660185|gb|AEE85585.1| Ribonuclease H-like protein
[Arabidopsis thaliana]
Length = 575
Score = 36.2 bits (82), Expect(3) = 4e-08
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Frame = -2
Query: 988 SFFWKSIHRVFNTISEGVLWNIHNGQSISVMKDPWLICNGKPRTLKELGVINPELEN--- 818
SF WKSIH + +G + NG+ I + + WL L+ V E +
Sbjct: 108 SFVWKSIHASQEILRQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSS 167
Query: 817 -MNVSGLFKSDGSCWDPELLALHFEPFIRQKIL 722
+ VS L G W +++ + F P + +K++
Sbjct: 168 ILKVSDLIDESGREWRKDVIEMLF-PEVERKLI 199
Score = 34.3 bits (77), Expect(3) = 4e-08
Identities = 22/84 (26%), Positives = 41/84 (48%)
Frame = -2
Query: 403 LLFECEWSRALWFASDLGLRMVGPEKGTIKS*VEKFMSWSHSS*EEISYAGVLACCILNN 224
LLF+C ++R W S + + + G +I + + + + + A L +L
Sbjct: 308 LLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGN-PQWEKASQLVPWLLWR 366
Query: 223 MWRIRNEIKFEQKQANRDRVLRRS 152
+W+ RNE+ F ++ N VLRR+
Sbjct: 367 LWKNRNELVFRGREFNAQEVLRRA 390
Score = 33.1 bits (74), Expect(3) = 4e-08
Identities = 29/100 (29%), Positives = 39/100 (39%), Gaps = 5/100 (5%)
Frame = -1
Query: 689 DKMIWCEDRSGSLTVKSVY----SMLNHSKWEGEXXXXXSKTIAH-IWKAKLPANTLLFI 525
D W SG TVKS Y ++N E I IWK++ F+
Sbjct: 211 DSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSEPSLNPIYQKIWKSQTSPKIQHFL 270
Query: 524 *KLYMMGLPMGDKLAPKKVPGD*SCPFCYKTIETDIHLLF 405
K LP+ LA + + + +C C ET HLLF
Sbjct: 271 WKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVNHLLF 310
>ref|NP_001176302.1| Os11g0106066 [Oryza sativa Japonica Group] gi|77548275|gb|ABA91072.1|
retrotransposon protein, putative, unclassified [Oryza
sativa Japonica Group] gi|255679693|dbj|BAH95030.1|
Os11g0106066 [Oryza sativa Japonica Group]
Length = 1690
Score = 43.5 bits (101), Expect(2) = 4e-08
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 4/100 (4%)
Frame = -1
Query: 692 KDKMIWCEDRSGSLTVKSVYSML----NHSKWEGEXXXXXSKTIAHIWKAKLPANTLLFI 525
+D + W D+SG +V+S Y++ N K+ IWK KLP +F
Sbjct: 1486 EDFLAWHPDKSGRFSVRSAYNLACRLANTEGSSSSFALHSRKSWDLIWKCKLPQKIKIFA 1545
Query: 524 *KLYMMGLPMGDKLAPKKVPGD*SCPFCYKTIETDIHLLF 405
K+ L D +K+ C C + +E +H LF
Sbjct: 1546 WKVASNCLATMDNKRKRKLVNSDICIICNREVENSVHALF 1585
Score = 40.8 bits (94), Expect(2) = 4e-08
Identities = 27/92 (29%), Positives = 45/92 (48%)
Frame = -2
Query: 979 WKSIHRVFNTISEGVLWNIHNGQSISVMKDPWLICNGKPRTLKELGVINPELENMNVSGL 800
W++I + +G++W + NGQSI + +DPW+ + R + G N L+ VS L
Sbjct: 1396 WRAIIYGLELLKKGIIWRVGNGQSIRMWRDPWIPRDHSRRPVTMRG--NCRLK--WVSDL 1451
Query: 799 FKSDGSCWDPELLALHFEPFIRQKILEVVVRP 704
DG+ WD + F + IL + + P
Sbjct: 1452 IGQDGT-WDVAQIRRCFLNIDTELILSICLSP 1482
>ref|XP_002522452.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223538337|gb|EEF39944.1| nucleic acid binding
protein, putative [Ricinus communis]
Length = 483
Score = 43.1 bits (100), Expect(2) = 9e-08
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Frame = -1
Query: 689 DKMIWCEDRSGSLTVKSVYSMLNHSKWEGEXXXXXSKTIA---HIWKAKLPANTLLFI*K 519
D++ W +D G +VK VY + + + + +WK + A +F+ +
Sbjct: 148 DQLFWFKDPKGKFSVKDVYRVQ-----QPDFSVLYPSNVVVWRRLWKLNIAAKCKVFMWR 202
Query: 518 LYMMGLPMGDKLAPKKVPGD*SCPFCYKTIETDIHLL 408
LP+ L +KV D SCP C ET +H+L
Sbjct: 203 ALTNRLPVRTNLVMRKVTEDSSCPCCVSQPETIMHIL 239
Score = 40.0 bits (92), Expect(2) = 9e-08
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Frame = -2
Query: 988 SFFWKSIHRVFNTISEGVLWNIHNGQSISVMKDPWLI--CNGKPRTLKELGVINPELENM 815
S+ W S+ +V + I +GV W I G +S+ WL+ NG T + EL
Sbjct: 52 SYIWASLQQVRDLICKGVQWKIGKGTEVSIGLHEWLLDASNGFIET-----NLPDELRLQ 106
Query: 814 NVSGLFKSDGSCWDPELLALHFEPFIRQKILEVVVRP 704
V L K WD E+L F + I +V+ P
Sbjct: 107 PVCSLLKPGTCDWDQEILNDLFSERDKNLINSIVLSP 143