BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00021105
         (553 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268032.1| PREDICTED: pentatricopeptide repeat-containi...   223   2e-56
ref|XP_002264269.1| PREDICTED: pentatricopeptide repeat-containi...   216   1e-54
ref|XP_004140672.1| PREDICTED: pentatricopeptide repeat-containi...   201   8e-50
emb|CBI20033.3| unnamed protein product [Vitis vinifera]              178   6e-43
ref|XP_003625825.1| Pentatricopeptide repeat-containing protein ...   165   5e-39

>ref|XP_002268032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g36240-like [Vitis vinifera]
          Length = 480

 Score =  223 bits (568), Expect = 2e-56
 Identities = 104/173 (60%), Positives = 130/173 (75%), Gaps = 5/173 (2%)
 Frame = -1

Query: 505 ITKSLQRPTKNSIITKPPEDYP-----APLPIVSLSLTTQDQLFQFLKTHLKPPFNSQHL 341
           + ++L +P        PP   P      P+P +SL+ T+  QL QFLK HL P F  Q L
Sbjct: 6   LRQTLPKPLHPPSQFTPPTASPNLISSTPIPTLSLANTSHHQLHQFLKAHLTPSFTPQDL 65

Query: 340 LHFLTKKLHYHPKFTQFDLHIFQWASKVESFRHDHSTYEWMIRTLAVTDRFNDLHSVLEY 161
           L FL  KLHYHPKF+ FDLHIF WA+ ++SFRHDHSTYEWM++TLA+TDRF+DLHS+L+ 
Sbjct: 66  LIFLKNKLHYHPKFSHFDLHIFTWAATIDSFRHDHSTYEWMVKTLAITDRFDDLHSLLQG 125

Query: 160 MVSNPCPCSDGIFCCPKIEDIFKFAINSYCRVGRLDEALIAFDSMRTLIDGKP 2
           MVSNPCPCSDGIF CP+ E IF+FA+N++CRVGRL++A IAF SMR +IDGKP
Sbjct: 126 MVSNPCPCSDGIFSCPRSEPIFRFALNAFCRVGRLEDAEIAFASMRRMIDGKP 178


>ref|XP_002264269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g36240-like [Vitis vinifera]
          Length = 588

 Score =  216 bits (551), Expect = 1e-54
 Identities = 102/171 (59%), Positives = 127/171 (74%), Gaps = 5/171 (2%)
 Frame = -1

Query: 499 KSLQRPTKNSIITKPPEDYP-----APLPIVSLSLTTQDQLFQFLKTHLKPPFNSQHLLH 335
           K+L +P        PP   P      P+P +SL+ T+  QL QFLK HL P F  Q LL 
Sbjct: 116 KTLPKPLHPLSQFTPPTASPNLIPSTPIPTLSLANTSHHQLHQFLKAHLTPSFTPQDLLI 175

Query: 334 FLTKKLHYHPKFTQFDLHIFQWASKVESFRHDHSTYEWMIRTLAVTDRFNDLHSVLEYMV 155
           FL  KLHYHPKF  FDLHIF WA+ ++SFRHD STYEWM++TLA+TDRF+DLHS+L+ MV
Sbjct: 176 FLKNKLHYHPKFAHFDLHIFTWAATIDSFRHDQSTYEWMVKTLAITDRFDDLHSLLQGMV 235

Query: 154 SNPCPCSDGIFCCPKIEDIFKFAINSYCRVGRLDEALIAFDSMRTLIDGKP 2
           SNPCP SDGIF CP+ E IF+FA+N++CRVGRL++A I+F+SMR +IDGKP
Sbjct: 236 SNPCPYSDGIFSCPRSEPIFRFALNAFCRVGRLEDAEISFESMRRMIDGKP 286


>ref|XP_004140672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g36240-like [Cucumis sativus]
           gi|449487417|ref|XP_004157616.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At2g36240-like [Cucumis sativus]
          Length = 486

 Score =  201 bits (510), Expect = 8e-50
 Identities = 96/177 (54%), Positives = 122/177 (68%), Gaps = 8/177 (4%)
 Frame = -1

Query: 508 PITKSLQRPTK-------NSIITKPPEDYPAPLPIVSLSLTTQ-DQLFQFLKTHLKPPFN 353
           PI + LQ P         N+I+   P+   APL  +S S     +QL  FLK+HL  PF 
Sbjct: 6   PILRKLQTPQPTPPSPLPNAILPPSPQTPVAPLLNLSFSSPHHYNQLLHFLKSHLTFPFT 65

Query: 352 SQHLLHFLTKKLHYHPKFTQFDLHIFQWASKVESFRHDHSTYEWMIRTLAVTDRFNDLHS 173
              LLHFL  KLH+HPKFT +D H+F WAS ++SFRHDHST+ WM RTLA TDRF +L S
Sbjct: 66  PNSLLHFLKSKLHFHPKFTHYDFHVFNWASTIDSFRHDHSTFAWMARTLATTDRFFELTS 125

Query: 172 VLEYMVSNPCPCSDGIFCCPKIEDIFKFAINSYCRVGRLDEALIAFDSMRTLIDGKP 2
           +L ++ S+PCPCSDGIF CP+ E IF+F+I++YCR  + DEA+ AFDSMR LIDG+P
Sbjct: 126 LLRFLASSPCPCSDGIFSCPQTESIFQFSISAYCRARKFDEAVFAFDSMRKLIDGRP 182


>emb|CBI20033.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  178 bits (451), Expect = 6e-43
 Identities = 85/171 (49%), Positives = 112/171 (65%), Gaps = 11/171 (6%)
 Frame = -1

Query: 505 ITKSLQRPTKNSIITKPPEDYP-----APLPIVSLSLTTQDQLFQFLKTHLKPPFNSQHL 341
           + ++L +P        PP   P      P+P +SL+ T+  QL QFLK HL P F  Q L
Sbjct: 37  LRQTLPKPLHPPSQFTPPTASPNLISSTPIPTLSLANTSHHQLHQFLKAHLTPSFTPQDL 96

Query: 340 LHFLTKKLHYHPKFTQFDLHIFQWASKVESFRHDHSTYEWMIRTLAVTDRFNDLHSVLEY 161
           L FL  KLHYHPKF+ FDLHIF WA+ ++SFRHDHSTYEWM++TLA+TDRF+DLHS+L+ 
Sbjct: 97  LIFLKNKLHYHPKFSHFDLHIFTWAATIDSFRHDHSTYEWMVKTLAITDRFDDLHSLLQG 156

Query: 160 MVSNPCPCSDGIFCCPKIED------IFKFAINSYCRVGRLDEALIAFDSM 26
           MVSNPCPCSDGIF CP++ D      +    IN Y +    ++ +  ++ M
Sbjct: 157 MVSNPCPCSDGIFSCPRMIDGKPSVAMHNILINGYVKCREHEKVMTVYEKM 207


>ref|XP_003625825.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355500840|gb|AES82043.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 485

 Score =  165 bits (417), Expect = 5e-39
 Identities = 81/168 (48%), Positives = 105/168 (62%), Gaps = 13/168 (7%)
 Frame = -1

Query: 466 ITKPPEDY-----PAPLPIVSLSL------TTQD--QLFQFLKTHLKPPFNSQHLLHFLT 326
           ITKPP        P P P  + SL       TQ       FL  HL PP   Q L HFL 
Sbjct: 9   ITKPPPPILNPPPPPPPPTTTTSLFPPTLSPTQHYTHFLHFLNHHLTPPLTPQTLTHFLK 68

Query: 325 KKLHYHPKFTQFDLHIFQWASKVESFRHDHSTYEWMIRTLAVTDRFNDLHSVLEYMVSNP 146
            KLH+HP FT FD H+F WAS +++F H+H++YEWM RTLA++ RF+ L ++L ++ +NP
Sbjct: 69  SKLHHHPSFTHFDFHLFSWASTLDTFSHNHTSYEWMTRTLALSHRFSLLRTLLTFISTNP 128

Query: 145 CPCSDGIFCCPKIEDIFKFAINSYCRVGRLDEALIAFDSMRTLIDGKP 2
           C CS  IF CP+ E IF+FAI  YC+  + D+A+ AF+ MR LIDGKP
Sbjct: 129 CQCSQAIFSCPQTEPIFRFAIQYYCKAFKFDDAVYAFNVMRRLIDGKP 176