BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00021010
         (604 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containi...   205   4e-51
emb|CBI27235.3| unnamed protein product [Vitis vinifera]              205   4e-51
ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arab...   203   2e-50
ref|NP_191302.2| pentatricopeptide repeat-containing protein [Ar...   200   1e-49
gb|AAP40452.1| unknown protein [Arabidopsis thaliana]                 200   1e-49

>ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  205 bits (522), Expect = 4e-51
 Identities = 93/117 (79%), Positives = 104/117 (88%)
 Frame = -2

Query: 603  DALHTQSQQIQEFLEGLWVRMRKEGYMPDTSCVLHNIDEEEKEYLLCGHSEKLAIAFGIL 424
            D  H QS+Q+  FLE L  +MRKEGY+PDTSCVLHN+DE+EKE LLCGHSEKLAIAFGIL
Sbjct: 780  DVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDEKENLLCGHSEKLAIAFGIL 839

Query: 423  NTPPGATIRVTKNLRVCNDCHLATKFISKIVERDIIVRDAKRFHHFKDGSCSCGDYW 253
            NTPPG TIRV KNLRVCNDCH ATKFISKI+ER+IIVRD +RFHHFK+G+CSCGDYW
Sbjct: 840  NTPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVRRFHHFKEGTCSCGDYW 896


>emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  205 bits (522), Expect = 4e-51
 Identities = 93/117 (79%), Positives = 104/117 (88%)
 Frame = -2

Query: 603 DALHTQSQQIQEFLEGLWVRMRKEGYMPDTSCVLHNIDEEEKEYLLCGHSEKLAIAFGIL 424
           D  H QS+Q+  FLE L  +MRKEGY+PDTSCVLHN+DE+EKE LLCGHSEKLAIAFGIL
Sbjct: 580 DVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDEKENLLCGHSEKLAIAFGIL 639

Query: 423 NTPPGATIRVTKNLRVCNDCHLATKFISKIVERDIIVRDAKRFHHFKDGSCSCGDYW 253
           NTPPG TIRV KNLRVCNDCH ATKFISKI+ER+IIVRD +RFHHFK+G+CSCGDYW
Sbjct: 640 NTPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVRRFHHFKEGTCSCGDYW 696


>ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
            lyrata] gi|297323990|gb|EFH54411.1| hypothetical protein
            ARALYDRAFT_486188 [Arabidopsis lyrata subsp. lyrata]
          Length = 886

 Score =  203 bits (517), Expect = 2e-50
 Identities = 89/117 (76%), Positives = 106/117 (90%)
 Frame = -2

Query: 603  DALHTQSQQIQEFLEGLWVRMRKEGYMPDTSCVLHNIDEEEKEYLLCGHSEKLAIAFGIL 424
            D+ H QS++++ +LE LW RMRKEGY+PDTSCVLHN++E+EKE LLCGHSEKLAIAFGIL
Sbjct: 770  DSSHPQSEKLRGYLETLWERMRKEGYIPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGIL 829

Query: 423  NTPPGATIRVTKNLRVCNDCHLATKFISKIVERDIIVRDAKRFHHFKDGSCSCGDYW 253
            NT PG  IRV KNLRVCNDCHLATKFISK+V+R+II+RD +RFHHFK+G+CSCGDYW
Sbjct: 830  NTSPGTIIRVAKNLRVCNDCHLATKFISKVVDREIILRDVRRFHHFKNGTCSCGDYW 886


>ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At3g57430, chloroplastic; Flags: Precursor
            gi|332646133|gb|AEE79654.1| pentatricopeptide
            repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  200 bits (509), Expect = 1e-49
 Identities = 89/117 (76%), Positives = 104/117 (88%)
 Frame = -2

Query: 603  DALHTQSQQIQEFLEGLWVRMRKEGYMPDTSCVLHNIDEEEKEYLLCGHSEKLAIAFGIL 424
            D+ H QS+++  +LE LW RMRKEGY+PDTSCVLHN++E+EKE LLCGHSEKLAIAFGIL
Sbjct: 774  DSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGIL 833

Query: 423  NTPPGATIRVTKNLRVCNDCHLATKFISKIVERDIIVRDAKRFHHFKDGSCSCGDYW 253
            NT PG  IRV KNLRVCNDCHLATKFISKIV+R+II+RD +RFH FK+G+CSCGDYW
Sbjct: 834  NTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890


>gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  200 bits (509), Expect = 1e-49
 Identities = 89/117 (76%), Positives = 104/117 (88%)
 Frame = -2

Query: 603  DALHTQSQQIQEFLEGLWVRMRKEGYMPDTSCVLHNIDEEEKEYLLCGHSEKLAIAFGIL 424
            D+ H QS+++  +LE LW RMRKEGY+PDTSCVLHN++E+EKE LLCGHSEKLAIAFGIL
Sbjct: 774  DSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGIL 833

Query: 423  NTPPGATIRVTKNLRVCNDCHLATKFISKIVERDIIVRDAKRFHHFKDGSCSCGDYW 253
            NT PG  IRV KNLRVCNDCHLATKFISKIV+R+II+RD +RFH FK+G+CSCGDYW
Sbjct: 834  NTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890