BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00020991
         (650 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277185.1| PREDICTED: ribosome biogenesis GTPase A [Vit...   145   8e-33
ref|XP_004143028.1| PREDICTED: ribosome biogenesis GTPase A-like...   136   4e-30
ref|XP_002318658.1| predicted protein [Populus trichocarpa] gi|2...   122   6e-26
ref|XP_002526350.1| GTP binding protein, putative [Ricinus commu...   121   1e-25
ref|NP_192803.4| GTP binding protein [Arabidopsis thaliana] gi|3...   120   3e-25

>ref|XP_002277185.1| PREDICTED: ribosome biogenesis GTPase A [Vitis vinifera]
           gi|297744953|emb|CBI38545.3| unnamed protein product
           [Vitis vinifera]
          Length = 369

 Score =  145 bits (365), Expect = 8e-33
 Identities = 69/115 (60%), Positives = 90/115 (78%), Gaps = 1/115 (0%)
 Frame = -3

Query: 342 MAMSRYARSVGAAVMKAGAEKTSTWFTPHMAAASRAIFERIPLVDITLEVRDARIPISSA 163
           M ++   + +G+ V +A      TWF+PHMAAASRA+ ERIPLVD+ LEVRDARIP+SS 
Sbjct: 1   MTIANLEKRLGSGVKRAA----KTWFSPHMAAASRAVSERIPLVDLVLEVRDARIPLSSE 56

Query: 162 YEHMRKFP-SSHRIIVLNKMDLAGRSQTKEWIRHFREQNCICYGINAHNKENVKE 1
           Y+ +R FP SS RIIVLNKMDLA R + KEW+R+F +QNCI +G+N+HNK+N+KE
Sbjct: 57  YDQLRNFPSSSKRIIVLNKMDLANRLEIKEWMRYFEQQNCISFGVNSHNKDNIKE 111


>ref|XP_004143028.1| PREDICTED: ribosome biogenesis GTPase A-like [Cucumis sativus]
           gi|449482814|ref|XP_004156412.1| PREDICTED: ribosome
           biogenesis GTPase A-like [Cucumis sativus]
          Length = 366

 Score =  136 bits (342), Expect = 4e-30
 Identities = 69/117 (58%), Positives = 84/117 (71%), Gaps = 3/117 (2%)
 Frame = -3

Query: 342 MAMSRYARSVGAAV--MKAGAEKTSTWFTPHMAAASRAIFERIPLVDITLEVRDARIPIS 169
           MA +   R +G A+  + AG   +S W+  HM AASRA+ ERIPLVD  LEVRDARIP S
Sbjct: 1   MAAATLMRKIGTAINQLAAGNRISSGWYDAHMEAASRAVAERIPLVDFVLEVRDARIPTS 60

Query: 168 SAYEHMRKFP-SSHRIIVLNKMDLAGRSQTKEWIRHFREQNCICYGINAHNKENVKE 1
           S YE M+  P SS RIIVLNK DLA +SQT+ W RHF + NCI YG+N+HNKEN++E
Sbjct: 61  SEYEMMKNHPPSSKRIIVLNKTDLADQSQTEVWTRHFEDHNCISYGVNSHNKENIRE 117


>ref|XP_002318658.1| predicted protein [Populus trichocarpa] gi|222859331|gb|EEE96878.1|
           predicted protein [Populus trichocarpa]
          Length = 338

 Score =  122 bits (306), Expect = 6e-26
 Identities = 63/115 (54%), Positives = 81/115 (70%), Gaps = 3/115 (2%)
 Frame = -3

Query: 336 MSRYARSVGAAVMKAGAEKT-STWFTPHMAAASRAIFERIPLVDITLEVRDARIPISSAY 160
           M   +RS+G   +    +K  S W++ HMAAAS AI +RIPL D  LEVRDARIP+SS  
Sbjct: 1   MGMASRSIGLKEIGEALKKAKSGWYSLHMAAASHAIAQRIPLADFILEVRDARIPLSSHC 60

Query: 159 EHMRKFPSS--HRIIVLNKMDLAGRSQTKEWIRHFREQNCICYGINAHNKENVKE 1
           + +  FP S   RIIV+NK DLA RSQ KEW ++F +QNCI YG+N+HNKE+VK+
Sbjct: 61  QLLSNFPPSSLRRIIVMNKTDLANRSQLKEWTKYFEQQNCISYGVNSHNKEDVKK 115


>ref|XP_002526350.1| GTP binding protein, putative [Ricinus communis]
           gi|223534309|gb|EEF36021.1| GTP binding protein,
           putative [Ricinus communis]
          Length = 373

 Score =  121 bits (304), Expect = 1e-25
 Identities = 60/109 (55%), Positives = 77/109 (70%), Gaps = 1/109 (0%)
 Frame = -3

Query: 324 ARSVGAAVMKAGAEKTSTWFTPHMAAASRAIFERIPLVDITLEVRDARIPISSAYEHMRK 145
           A  +G  VMKA   +   W+ PHMAAAS AI ERI LVD  +EVRDARIP+SS  + +  
Sbjct: 3   ASEIGKRVMKASRNREQRWYNPHMAAASSAIAERISLVDFVIEVRDARIPLSSECQLLTN 62

Query: 144 F-PSSHRIIVLNKMDLAGRSQTKEWIRHFREQNCICYGINAHNKENVKE 1
              SS RIIV+NKMDLA R Q K+WI++F+++  + Y IN+HNK+NVKE
Sbjct: 63  HSDSSRRIIVMNKMDLANRLQLKDWIKYFKQRGFVSYAINSHNKDNVKE 111


>ref|NP_192803.4| GTP binding protein [Arabidopsis thaliana]
           gi|3600035|gb|AAC35523.1| contains similarity to
           GTP-binding proteins [Arabidopsis thaliana]
           gi|332657513|gb|AEE82913.1| GTP binding protein
           [Arabidopsis thaliana]
          Length = 377

 Score =  120 bits (300), Expect = 3e-25
 Identities = 62/112 (55%), Positives = 79/112 (70%), Gaps = 2/112 (1%)
 Frame = -3

Query: 330 RYARSVGAAVMKAGAEKTSTWFTPHMAAASRAIFERIPLVDITLEVRDARIPISSAYEHM 151
           + AR +G AV+KA       W+ PHMAAA RAI ERIPLVD  LE+RDARIP+SS YE +
Sbjct: 8   KIAREIGDAVIKASRNPNRRWYGPHMAAAVRAISERIPLVDFVLEIRDARIPLSSEYELL 67

Query: 150 RKFP--SSHRIIVLNKMDLAGRSQTKEWIRHFREQNCICYGINAHNKENVKE 1
           RKF    S RIIVLNKM+LA   + K+ I +F E+N + Y +N+HNK+ VK+
Sbjct: 68  RKFSPLPSKRIIVLNKMELADPLELKKCIDYFEERNYLSYAVNSHNKDCVKQ 119