BLASTX nr result

ID: Coptis25_contig00020980 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00020980
         (895 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002317239.1| predicted protein [Populus trichocarpa] gi|2...   323   e-118
ref|XP_002521428.1| beta-galactosidase, putative [Ricinus commun...   324   e-114
gb|ABK24373.1| unknown [Picea sitchensis]                             276   1e-93
ref|XP_003558321.1| PREDICTED: LOW QUALITY PROTEIN: beta-galacto...   277   1e-93
dbj|BAJ89450.1| predicted protein [Hordeum vulgare subsp. vulgare]    278   1e-93

>ref|XP_002317239.1| predicted protein [Populus trichocarpa] gi|222860304|gb|EEE97851.1|
           predicted protein [Populus trichocarpa]
          Length = 849

 Score =  323 bits (828), Expect(2) = e-118
 Identities = 148/176 (84%), Positives = 157/176 (89%)
 Frame = +3

Query: 3   NTCNGFYCDEFTPNSPSKPKMWTENYVGWFLAFGYAHPFRPDEDLAFAVTRFFGKGGTFQ 182
           NTCNGFYCD+FTPNSPSKPKMWTENY GWFLAFGYA P+RP EDLAFAV RFF  GG+FQ
Sbjct: 238 NTCNGFYCDQFTPNSPSKPKMWTENYSGWFLAFGYAVPYRPVEDLAFAVARFFEYGGSFQ 297

Query: 183 NYYMYFGGTNFGRTAGGPLVATSYDYDAPIDEYGFIRQPKWGHLRDLHRAIKQCERYLVS 362
           NYYMYFGGTNFGRTAGGPLVATSYDYDAPIDEYGFIRQPKWGHLRDLH AIKQCE YLVS
Sbjct: 298 NYYMYFGGTNFGRTAGGPLVATSYDYDAPIDEYGFIRQPKWGHLRDLHSAIKQCEEYLVS 357

Query: 363 SDPIFKKLGVNLEAHIYYKSPNNCAAFLSNVDKLLDANVTFNGRTYNLPAWSVSIL 530
           SDP+ ++LG  LEAH+YYK  N+CAAFL+N D   DANVTFNG TY LPAWSVSIL
Sbjct: 358 SDPVHQQLGNKLEAHVYYKHSNDCAAFLANYDSGSDANVTFNGNTYFLPAWSVSIL 413



 Score =  128 bits (321), Expect(2) = e-118
 Identities = 63/105 (60%), Positives = 78/105 (74%), Gaps = 1/105 (0%)
 Frame = +1

Query: 583 AWSVSILPDCKNVVYNTAKIVSQRSLGHHLTTTRSLKD-ELPKASTWSWYKEKKGVQDKY 759
           AWSVSIL DCKNV++NTAK+V+QR +G  L +  +  D  L  AS WSWYKE+ G+    
Sbjct: 407 AWSVSILADCKNVIFNTAKVVTQRHIGDALFSRSTTVDGNLVAASPWSWYKEEVGIWGNN 466

Query: 760 SFTSPSLLEQIKTTKDTSDFLWYTTSVIVKPGERKEVFLSVESLG 894
           SFT P LLEQI TTKDTSDFLWY+TS+ V+ G+ KE  L++ESLG
Sbjct: 467 SFTKPGLLEQINTTKDTSDFLWYSTSLYVEAGQDKEHLLNIESLG 511


>ref|XP_002521428.1| beta-galactosidase, putative [Ricinus communis]
           gi|223539327|gb|EEF40918.1| beta-galactosidase, putative
           [Ricinus communis]
          Length = 841

 Score =  324 bits (830), Expect(2) = e-114
 Identities = 148/176 (84%), Positives = 158/176 (89%)
 Frame = +3

Query: 3   NTCNGFYCDEFTPNSPSKPKMWTENYVGWFLAFGYAHPFRPDEDLAFAVTRFFGKGGTFQ 182
           NTCNGFYCD F+PNSPSKPKMWTENY GWFL+FGYA P+RP EDLAFAV RFF  GGTFQ
Sbjct: 232 NTCNGFYCDRFSPNSPSKPKMWTENYSGWFLSFGYAIPYRPVEDLAFAVARFFETGGTFQ 291

Query: 183 NYYMYFGGTNFGRTAGGPLVATSYDYDAPIDEYGFIRQPKWGHLRDLHRAIKQCERYLVS 362
           NYYMYFGGTNFGRTAGGPLVATSYDYDAPIDEYGFIRQPKWGHLRDLH+AIKQCE +L+S
Sbjct: 292 NYYMYFGGTNFGRTAGGPLVATSYDYDAPIDEYGFIRQPKWGHLRDLHKAIKQCEEHLIS 351

Query: 363 SDPIFKKLGVNLEAHIYYKSPNNCAAFLSNVDKLLDANVTFNGRTYNLPAWSVSIL 530
           SDPI ++LG NLEAHIYYKS N+CAAFL+N D   DANVTFNG  Y LPAWSVSIL
Sbjct: 352 SDPIHQQLGNNLEAHIYYKSSNDCAAFLANYDSSSDANVTFNGNIYFLPAWSVSIL 407



 Score =  114 bits (286), Expect(2) = e-114
 Identities = 56/105 (53%), Positives = 75/105 (71%), Gaps = 1/105 (0%)
 Frame = +1

Query: 583 AWSVSILPDCKNVVYNTAKIVSQRSLGHHLTTTRSLKDELP-KASTWSWYKEKKGVQDKY 759
           AWSVSILPDCKNV++NTAK++   +LG       +  +E+P +   WSWYKE+ G+    
Sbjct: 401 AWSVSILPDCKNVIFNTAKVLIL-NLGDDFFAHSTSVNEIPLEQIVWSWYKEEVGIWGNN 459

Query: 760 SFTSPSLLEQIKTTKDTSDFLWYTTSVIVKPGERKEVFLSVESLG 894
           SFT+P LLEQI TTKD SDFLWY+TS+ V   + K++ L++ESLG
Sbjct: 460 SFTAPGLLEQINTTKDISDFLWYSTSISVNADQVKDIILNIESLG 504


>gb|ABK24373.1| unknown [Picea sitchensis]
          Length = 861

 Score =  276 bits (705), Expect(2) = 1e-93
 Identities = 123/176 (69%), Positives = 142/176 (80%)
 Frame = +3

Query: 3   NTCNGFYCDEFTPNSPSKPKMWTENYVGWFLAFGYAHPFRPDEDLAFAVTRFFGKGGTFQ 182
           NTCNGFYCD FTPNSP+KPKMWTEN+ GWFL+FG   PFRP EDLAF+V RFF +GGTFQ
Sbjct: 233 NTCNGFYCDAFTPNSPNKPKMWTENWSGWFLSFGGRLPFRPTEDLAFSVARFFQRGGTFQ 292

Query: 183 NYYMYFGGTNFGRTAGGPLVATSYDYDAPIDEYGFIRQPKWGHLRDLHRAIKQCERYLVS 362
           NYYMY GGTNFGRT GGP +ATSYDYDAPIDEYG +RQPKWGHL++LH+AIK CE  LV+
Sbjct: 293 NYYMYHGGTNFGRTTGGPFIATSYDYDAPIDEYGIVRQPKWGHLKELHKAIKLCEAALVN 352

Query: 363 SDPIFKKLGVNLEAHIYYKSPNNCAAFLSNVDKLLDANVTFNGRTYNLPAWSVSIL 530
           ++  +  LG  LEAH+Y      CAAFL+N +   DA V FNG +Y+LPAWSVSIL
Sbjct: 353 AESNYTSLGSGLEAHVYSPGSGTCAAFLANSNTQSDATVKFNGNSYHLPAWSVSIL 408



 Score = 94.4 bits (233), Expect(2) = 1e-93
 Identities = 55/116 (47%), Positives = 71/116 (61%), Gaps = 12/116 (10%)
 Frame = +1

Query: 583 AWSVSILPDCKNVVYNTAKIVSQRSLGHH------LTTTRSLKD-ELPKASTWSWYKEKK 741
           AWSVSILPDCKNVV+NTAKI SQ +          L  + S+K  +   A++WSW  E+ 
Sbjct: 402 AWSVSILPDCKNVVFNTAKIGSQTTSVQMNPANLILAGSNSMKGTDSANAASWSWLHEQI 461

Query: 742 GVQDKYSFTSPSLLEQIKTTKDTSDFLWYTTSVIVKPGE-----RKEVFLSVESLG 894
           G+    +F+ P LLEQI TT D+SD+LWYTTS+ V   E       +  L V+SLG
Sbjct: 462 GIGGSNTFSKPGLLEQINTTVDSSDYLWYTTSIQVDDNEPFLHNGTQPVLHVQSLG 517


>ref|XP_003558321.1| PREDICTED: LOW QUALITY PROTEIN: beta-galactosidase 6-like
           [Brachypodium distachyon]
          Length = 852

 Score =  277 bits (708), Expect(2) = 1e-93
 Identities = 122/176 (69%), Positives = 147/176 (83%)
 Frame = +3

Query: 3   NTCNGFYCDEFTPNSPSKPKMWTENYVGWFLAFGYAHPFRPDEDLAFAVTRFFGKGGTFQ 182
           NTCNGFYCD+FTPNS SKPK+WTEN+ GWFL+FG A P+RP EDLAFAV RF+ +GGT Q
Sbjct: 231 NTCNGFYCDQFTPNSNSKPKLWTENWSGWFLSFGGAVPYRPTEDLAFAVARFYQRGGTLQ 290

Query: 183 NYYMYFGGTNFGRTAGGPLVATSYDYDAPIDEYGFIRQPKWGHLRDLHRAIKQCERYLVS 362
           NYYMY GGTNFGR++GGP ++TSYDYDAPIDEYG +RQPKWGHL+D+H+AIKQCE  L++
Sbjct: 291 NYYMYHGGTNFGRSSGGPFISTSYDYDAPIDEYGLVRQPKWGHLKDVHKAIKQCEPALIA 350

Query: 363 SDPIFKKLGVNLEAHIYYKSPNNCAAFLSNVDKLLDANVTFNGRTYNLPAWSVSIL 530
           +DP +  +G N EAH+ YK+ + CAAFL+N+D   D  VTFNG  Y LPAWSVSIL
Sbjct: 351 TDPSYMSMGQNAEAHV-YKAGSVCAAFLANMDTQSDKTVTFNGNAYKLPAWSVSIL 405



 Score = 93.2 bits (230), Expect(2) = 1e-93
 Identities = 54/100 (54%), Positives = 65/100 (65%), Gaps = 8/100 (8%)
 Frame = +1

Query: 583 AWSVSILPDCKNVVYNTAKIVSQ------RSLGHHLTTT--RSLKDELPKASTWSWYKEK 738
           AWSVSILPDCKNVV NTA+I SQ      RSLG     +   S++ EL   S WS+  E 
Sbjct: 399 AWSVSILPDCKNVVLNTAQINSQTTTSEMRSLGSSTKASDGSSIETELA-LSGWSYAIEP 457

Query: 739 KGVQDKYSFTSPSLLEQIKTTKDTSDFLWYTTSVIVKPGE 858
            G+  + + T P L+EQI TT D SDFLWY+TSV+VK GE
Sbjct: 458 VGITTENALTKPGLMEQINTTADASDFLWYSTSVVVKGGE 497


>dbj|BAJ89450.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 763

 Score =  278 bits (710), Expect(2) = 1e-93
 Identities = 122/176 (69%), Positives = 147/176 (83%)
 Frame = +3

Query: 3   NTCNGFYCDEFTPNSPSKPKMWTENYVGWFLAFGYAHPFRPDEDLAFAVTRFFGKGGTFQ 182
           NTCNGFYCD+FTP+ PS+PK+WTEN+ GWFL+FG A P+RP EDLAFAV RF+ +GGT Q
Sbjct: 142 NTCNGFYCDQFTPSLPSRPKLWTENWSGWFLSFGGAVPYRPTEDLAFAVARFYQRGGTLQ 201

Query: 183 NYYMYFGGTNFGRTAGGPLVATSYDYDAPIDEYGFIRQPKWGHLRDLHRAIKQCERYLVS 362
           NYYMY GGTNFGR++GGP ++TSYDYDAPIDEYG +RQPKWGHLRD+H+AIK CE  L++
Sbjct: 202 NYYMYHGGTNFGRSSGGPFISTSYDYDAPIDEYGLVRQPKWGHLRDVHKAIKMCEPALIA 261

Query: 363 SDPIFKKLGVNLEAHIYYKSPNNCAAFLSNVDKLLDANVTFNGRTYNLPAWSVSIL 530
           +DP +  LG N EAH+ YKS + CAAFL+N+D   D  VTFNG+ Y LPAWSVSIL
Sbjct: 262 TDPSYMSLGQNAEAHV-YKSGSLCAAFLANIDDQSDKTVTFNGKAYKLPAWSVSIL 316



 Score = 92.4 bits (228), Expect(2) = 1e-93
 Identities = 57/116 (49%), Positives = 72/116 (62%), Gaps = 12/116 (10%)
 Frame = +1

Query: 583 AWSVSILPDCKNVVYNTAKIVSQ------RSLGHHLTTT--RSLKDELPKASTWSWYKEK 738
           AWSVSILPDCKNVV NTA+I SQ      R+LG     +   S++ EL  AS+WS+  E 
Sbjct: 310 AWSVSILPDCKNVVLNTAQINSQVASTQMRNLGFSTQASDGSSVEAELA-ASSWSYAVEP 368

Query: 739 KGVQDKYSFTSPSLLEQIKTTKDTSDFLWYTTSVIVKPGE----RKEVFLSVESLG 894
            G+  + + T P L+EQI TT D SDFLWY+TS++V  GE      +  L V SLG
Sbjct: 369 VGITKENALTKPGLMEQINTTADASDFLWYSTSIVVAGGEPYLNGSQSNLPVNSLG 424


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