BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00020977
         (755 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac...    92   1e-16
emb|CBI40152.3| unnamed protein product [Vitis vinifera]               91   2e-16
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...    91   2e-16
ref|XP_003577164.1| PREDICTED: DNA-directed RNA polymerase E sub...    80   6e-13
ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi...    76   7e-12

>gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
          Length = 1902

 Score = 92.0 bits (227), Expect = 1e-16
 Identities = 61/170 (35%), Positives = 84/170 (49%), Gaps = 8/170 (4%)
 Frame = -1

Query: 641 LTEPGTLFKNLMTVPGDIVLRYDGTMSNVYLFRNPV*NTKYSLGVRAIDFXXXXXXXXXX 462
           L EPGTLFKNLM V  D+V+ YDGT+ N+    N V   +Y +G                
Sbjct: 576 LAEPGTLFKNLMAVLRDVVICYDGTVRNIS--SNSVIQFEYGVG---------------- 617

Query: 461 XXXXXXXLHISSKSSWELMKVFSLIKIVYASVFLFALY------IPCFYSIW--FQKILF 306
                         S  L      + ++ A+      Y       P   S W   ++ILF
Sbjct: 618 -----------GMQSQNLFPAGDPVGVLAATAMSNPAYKAVLDSSPNSNSSWDMMKEILF 666

Query: 305 LKSNSMNDLNDRRVILYVNDWCCVKKYCKETAAYLVQNRLKRGSLKDITV 156
            ++N  ND+NDRRVILY+ND CC +KYC+E A+ LV+N LK+ SL+D  +
Sbjct: 667 CRANFRNDINDRRVILYLNDCCCGRKYCQENASCLVKNHLKKVSLRDAAI 716


>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score = 91.3 bits (225), Expect = 2e-16
 Identities = 64/172 (37%), Positives = 81/172 (47%), Gaps = 10/172 (5%)
 Frame = -1

Query: 641  LTEPGTLFKNLMTVPGDIVLRYDGTMSNVYLFRNPV*NTKYSLGVRAIDFXXXXXXXXXX 462
            L+EPGTLFKNLM +  D+V+ YDGT+ NV    N +   +Y +  R              
Sbjct: 836  LSEPGTLFKNLMAILRDVVICYDGTVRNVC--SNSIIQFEYGVKARTKPQHFFPAGEPVG 893

Query: 461  XXXXXXXLHI----------SSKSSWELMKVFSLIKIVYASVFLFALYIPCFYSIWFQKI 312
                    +           SS SSWELMK                            +I
Sbjct: 894  VLAATAMSNPAYKAVLDSSPSSNSSWELMK----------------------------EI 925

Query: 311  LFLKSNSMNDLNDRRVILYVNDWCCVKKYCKETAAYLVQNRLKRGSLKDITV 156
            L  + N  NDL DRRVILY+ND  C +KYC+E AAYLV+N+LK+ SLKD  V
Sbjct: 926  LLCQVNFKNDLIDRRVILYLNDCDCGRKYCRENAAYLVKNQLKKASLKDTAV 977



 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 42/109 (38%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
 Frame = -3

Query: 741  GLIKNCFFHGLNAACEDLVHSIYSGEVLVRCLK-VN*TG----NLIQELNDCSWRYCPAL 577
            GLI++CFFHGL+   E++VHSI + E++VR  + ++  G    NL+  L D    Y   +
Sbjct: 803  GLIRSCFFHGLDPY-EEMVHSISTREIIVRSSRGLSEPGTLFKNLMAILRDVVICYDGTV 861

Query: 576  RWDYE*CLFIP*SSLKYEV*SGSKGHRFCPRGEPGGALAATTVSNPSYK 430
            R      +       +Y V + +K   F P GEP G LAAT +SNP+YK
Sbjct: 862  RNVCSNSII----QFEYGVKARTKPQHFFPAGEPVGVLAATAMSNPAYK 906


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score = 91.3 bits (225), Expect = 2e-16
 Identities = 64/172 (37%), Positives = 81/172 (47%), Gaps = 10/172 (5%)
 Frame = -1

Query: 641  LTEPGTLFKNLMTVPGDIVLRYDGTMSNVYLFRNPV*NTKYSLGVRAIDFXXXXXXXXXX 462
            L+EPGTLFKNLM +  D+V+ YDGT+ NV    N +   +Y +  R              
Sbjct: 776  LSEPGTLFKNLMAILRDVVICYDGTVRNVC--SNSIIQFEYGVKARTKPQHFFPAGEPVG 833

Query: 461  XXXXXXXLHI----------SSKSSWELMKVFSLIKIVYASVFLFALYIPCFYSIWFQKI 312
                    +           SS SSWELMK                            +I
Sbjct: 834  VLAATAMSNPAYKAVLDSSPSSNSSWELMK----------------------------EI 865

Query: 311  LFLKSNSMNDLNDRRVILYVNDWCCVKKYCKETAAYLVQNRLKRGSLKDITV 156
            L  + N  NDL DRRVILY+ND  C +KYC+E AAYLV+N+LK+ SLKD  V
Sbjct: 866  LLCQVNFKNDLIDRRVILYLNDCDCGRKYCRENAAYLVKNQLKKASLKDTAV 917



 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 42/109 (38%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
 Frame = -3

Query: 741  GLIKNCFFHGLNAACEDLVHSIYSGEVLVRCLK-VN*TG----NLIQELNDCSWRYCPAL 577
            GLI++CFFHGL+   E++VHSI + E++VR  + ++  G    NL+  L D    Y   +
Sbjct: 743  GLIRSCFFHGLDPY-EEMVHSISTREIIVRSSRGLSEPGTLFKNLMAILRDVVICYDGTV 801

Query: 576  RWDYE*CLFIP*SSLKYEV*SGSKGHRFCPRGEPGGALAATTVSNPSYK 430
            R      +       +Y V + +K   F P GEP G LAAT +SNP+YK
Sbjct: 802  RNVCSNSII----QFEYGVKARTKPQHFFPAGEPVGVLAATAMSNPAYK 846


>ref|XP_003577164.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Brachypodium
            distachyon]
          Length = 1935

 Score = 79.7 bits (195), Expect = 6e-13
 Identities = 58/159 (36%), Positives = 80/159 (50%)
 Frame = -1

Query: 641  LTEPGTLFKNLMTVPGDIVLRYDGTMSNVYLFRNPV*NTKYSLGVRAIDFXXXXXXXXXX 462
            LTEPGTLFKNLM +  D+V+ YDGT+ N+    N +   KY+    A D           
Sbjct: 760  LTEPGTLFKNLMAILRDVVICYDGTVRNIC--SNSIMQLKYNED-DATDIPSALTPGEPV 816

Query: 461  XXXXXXXLHISSKSSWELMKVFSLIKIVYASVFLFALYIPCFYSIWFQKILFLKSNSMND 282
                     IS+ +   ++         +AS+               ++IL  K +  ND
Sbjct: 817  GVLAATA--ISNPAYKAVLDASQSNNTSWASM---------------KEILQTKVSYKND 859

Query: 281  LNDRRVILYVNDWCCVKKYCKETAAYLVQNRLKRGSLKD 165
             NDR+VIL++ND  C KK+CKE AA  VQNRLKR +L+D
Sbjct: 860  TNDRKVILFLNDCSCPKKFCKEKAAIAVQNRLKRVTLED 898


>ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi|297325678|gb|EFH56098.1|
            NRPD1b [Arabidopsis lyrata subsp. lyrata]
          Length = 1947

 Score = 76.3 bits (186), Expect = 7e-12
 Identities = 59/170 (34%), Positives = 80/170 (47%), Gaps = 8/170 (4%)
 Frame = -1

Query: 641  LTEPGTLFKNLMTVPGDIVLRYDGTMSNVYLFRNPV*NTKYSLGVRAIDFXXXXXXXXXX 462
            L EPGTLFKNLM V  DIV+  DGT+ N     N V   +++ GV               
Sbjct: 772  LAEPGTLFKNLMAVLRDIVITNDGTVRNTC--SNSV--VQFTYGVD-------------- 813

Query: 461  XXXXXXXLHISSKSSWELMKVFSLIKIVYASVFLFALYIPCFYSI------WFQ--KILF 306
                      S +    L +    + ++ A+      Y     S       W Q  ++L 
Sbjct: 814  ----------SERGHQGLFEAGEPVGVLAATAMSNPAYKAVLDSTANSNSSWEQMKEVLL 863

Query: 305  LKSNSMNDLNDRRVILYVNDWCCVKKYCKETAAYLVQNRLKRGSLKDITV 156
             K N  N  NDRRVILY+N+  C K++C+E AAY V+N+LK+ SLKD  V
Sbjct: 864  CKVNFQNTTNDRRVILYLNECHCGKRFCQENAAYTVRNKLKKVSLKDTAV 913