BLASTX nr result

ID: Coptis25_contig00020968 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00020968
         (544 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga...    69   6e-10
gb|AAF17675.1|AC009243_2 F28K19.3 [Arabidopsis thaliana]               60   2e-07
emb|CAN77450.1| hypothetical protein VITISV_016971 [Vitis vinifera]    60   3e-07
ref|XP_002450418.1| hypothetical protein SORBIDRAFT_05g005061 [S...    59   4e-07
ref|XP_002445372.1| hypothetical protein SORBIDRAFT_07g013775 [S...    59   5e-07

>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1369

 Score = 68.6 bits (166), Expect = 6e-10
 Identities = 34/90 (37%), Positives = 54/90 (60%), Gaps = 4/90 (4%)
 Frame = -1

Query: 262 MMTMNCRGMGTDSTILITKDLVREHQPDILCFSETKADKRRMEVVRKELKYQGNFILPAE 83
           +++ NCRGMG+ S +   + L+    P I+  SETK     ME V+K+LK++    +  E
Sbjct: 4   ILSWNCRGMGSPSALSALRRLLASENPQIVFLSETKLKSYEMESVKKKLKWEHMVAVDCE 63

Query: 82  G----TRGGLAVLWKEGIQLEVLGATQNHI 5
           G     RGGLA+LW+  I+++V+  + NHI
Sbjct: 64  GECRKRRGGLAMLWRSEIKVQVMSMSSNHI 93


>gb|AAF17675.1|AC009243_2 F28K19.3 [Arabidopsis thaliana]
          Length = 238

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 27/74 (36%), Positives = 43/74 (58%)
 Frame = -1

Query: 250 NCRGMGTDSTILITKDLVREHQPDILCFSETKADKRRMEVVRKELKYQGNFILPAEGTRG 71
           NC+G+G D T+   K++ R++ PD++C SETK     +     EL +    ++P+ G  G
Sbjct: 60  NCQGLGIDLTVRRLKEINRKYLPDVICLSETKQRNDYVRDTCCELGFSNFVMVPSMGLSG 119

Query: 70  GLAVLWKEGIQLEV 29
           GL VLWK  + + V
Sbjct: 120 GLVVLWKPSVHISV 133


>emb|CAN77450.1| hypothetical protein VITISV_016971 [Vitis vinifera]
          Length = 652

 Score = 59.7 bits (143), Expect = 3e-07
 Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
 Frame = -1

Query: 271 TAMM-MTMNCRGMGTDSTILITKDLVREHQPDILCFSETKADKRRMEVVRKELKYQGNFI 95
           TAM+ ++ NCRG+G   T+L   ++ +  +PD +   ET     ++E ++ +L ++G F 
Sbjct: 305 TAMIGISWNCRGLGNPRTVLALCEINKSRKPDFIFLIETLVHSAQVEKLKSKLGFEGAFC 364

Query: 94  LPAEGTRGGLAVLWKEGIQLEVLGATQNHI 5
           +   G  GGLA LW++     +L  +Q+HI
Sbjct: 365 VDRVGRGGGLAFLWRKAGMFSLLXYSQSHI 394


>ref|XP_002450418.1| hypothetical protein SORBIDRAFT_05g005061 [Sorghum bicolor]
           gi|241936261|gb|EES09406.1| hypothetical protein
           SORBIDRAFT_05g005061 [Sorghum bicolor]
          Length = 753

 Score = 59.3 bits (142), Expect = 4e-07
 Identities = 25/82 (30%), Positives = 45/82 (54%)
 Frame = -1

Query: 250 NCRGMGTDSTILITKDLVREHQPDILCFSETKADKRRMEVVRKELKYQGNFILPAEGTRG 71
           NCRG+G  +T+   +DL +++ P ++   ET+  K R+E +R  L +  +F + + G  G
Sbjct: 7   NCRGIGNPATVKELRDLAKDYAPSVMFIMETQISKYRVENLRYTLSFDNSFAVNSSGRSG 66

Query: 70  GLAVLWKEGIQLEVLGATQNHI 5
           GL + W   + L +   +  HI
Sbjct: 67  GLGLFWNNDVLLSIQKYSNYHI 88


>ref|XP_002445372.1| hypothetical protein SORBIDRAFT_07g013775 [Sorghum bicolor]
           gi|241941722|gb|EES14867.1| hypothetical protein
           SORBIDRAFT_07g013775 [Sorghum bicolor]
          Length = 589

 Score = 58.9 bits (141), Expect = 5e-07
 Identities = 27/77 (35%), Positives = 46/77 (59%)
 Frame = -1

Query: 235 GTDSTILITKDLVREHQPDILCFSETKADKRRMEVVRKELKYQGNFILPAEGTRGGLAVL 56
           G D  +    +  R   PD++  SETK+D++RM V+R +L ++   ++   G  GGLAVL
Sbjct: 258 GRDDIVRGLLNCQRSVSPDMMLLSETKSDEKRMRVLRMKLGFENMEVVDCVGKGGGLAVL 317

Query: 55  WKEGIQLEVLGATQNHI 5
           W+ G+ + +   ++NHI
Sbjct: 318 WRRGVDVVLRSKSKNHI 334


Top