BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00020954
         (1827 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002303222.1| predicted protein [Populus trichocarpa] gi|2...   616   e-174
ref|XP_002519926.1| pentatricopeptide repeat-containing protein,...   598   e-168
ref|XP_003548696.1| PREDICTED: pentatricopeptide repeat-containi...   576   e-162
ref|XP_003629008.1| Pentatricopeptide repeat-containing protein ...   550   e-154
ref|XP_002269803.2| PREDICTED: pentatricopeptide repeat-containi...   535   e-149

>ref|XP_002303222.1| predicted protein [Populus trichocarpa] gi|222840654|gb|EEE78201.1|
            predicted protein [Populus trichocarpa]
          Length = 472

 Score =  616 bits (1588), Expect = e-174
 Identities = 295/446 (66%), Positives = 362/446 (81%)
 Frame = +1

Query: 361  MNPRVRVLCDIVGTVPAAEIETALARCGVSPLPEYAEEVLKHSYEFPAAAVKFFKWTGSL 540
            ++P  R+L +I+    + +IE+AL+  G+ P  +   EVLK  +E   +A+ FF+W G  
Sbjct: 26   ISPSARLLFEIITRPSSHDIESALSSTGIPPTHDIVHEVLKLCHENATSAIAFFRWAGRT 85

Query: 541  NRHTQYSWNLMVDLLGKNGLFETMWDAIRSMKQENVLSMATFASVFGSYCIAGKFSEAVM 720
            ++ T Y+WNLMVDLLGKN ++E MWDA+R+MKQE++LSMATF SVFGSYC+AGKF+EA+M
Sbjct: 86   HKLTSYAWNLMVDLLGKNWMYEPMWDAVRTMKQEDMLSMATFVSVFGSYCMAGKFNEAIM 145

Query: 721  SFDVLDRYGIQQDVIAVNSLLSAICREENQTYKALEFFEKIKMKIAPDADTFAILLEGWE 900
            SF V+D+YG+QQDV+ VNSLL+AIC EENQT KALEFF+KIK+KI P+ADTFAILLEGWE
Sbjct: 146  SFYVMDKYGVQQDVVVVNSLLTAICHEENQTAKALEFFDKIKLKIPPNADTFAILLEGWE 205

Query: 901  KEGNAAKAKNTFGEMVIRVGWSPQNMSAYDAFLTTLVRGAQADEAIKFLHVMKGKNCLPG 1080
            KEG+ AKAK TFGEMVI+VGWSP+NMSAYD+FLTTLVRG+QADEA+KFL VMKGKNCLPG
Sbjct: 206  KEGDVAKAKTTFGEMVIKVGWSPENMSAYDSFLTTLVRGSQADEAVKFLRVMKGKNCLPG 265

Query: 1081 MKFFSNALDILVKQNDSSQAVPLWEIMVGSGLLPSLIMYNAMIGLLCNNSDFDNALRLLD 1260
            +KFFSNALD+LVKQNDS+ A+PLW+IMVGSGLLP+LIMYNAMIGL CNN+D DNA RLLD
Sbjct: 266  LKFFSNALDMLVKQNDSTHAIPLWDIMVGSGLLPNLIMYNAMIGLHCNNNDVDNAFRLLD 325

Query: 1261 EMAFRGAFPDSLTYNMIFQCLIKNKKVRQAANFFNEMMKNEQPPTHANCXXXXXXXXXXX 1440
            EM F GAFPD LT+N+IF+CLIKNKKV +   FF EM+KNE PPTH +C           
Sbjct: 326  EMVFNGAFPDFLTFNIIFRCLIKNKKVHRVGKFFYEMIKNESPPTHFDCSAAIMTLIDGG 385

Query: 1441 XPETAVEVWVSMMINLVYPADDSSNELLIGLCGLGRLSEVRKFFDDMLDRRINIYESTMK 1620
             PE A+E+W  ++ N V P D S+N LLIG C LGR+S+VR+F +DMLDRRINIYESTMK
Sbjct: 386  DPEMAIEIWNYIVENHVLPLDGSANALLIGFCNLGRMSQVRRFAEDMLDRRINIYESTMK 445

Query: 1621 KLKNAFYKKGRSGEDIYYHLSKKWKA 1698
            KLK++F K GR G D Y  L ++WKA
Sbjct: 446  KLKDSFDKTGRHGRDKYDCLIRRWKA 471


>ref|XP_002519926.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223540972|gb|EEF42530.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 481

 Score =  598 bits (1543), Expect = e-168
 Identities = 291/456 (63%), Positives = 357/456 (78%)
 Frame = +1

Query: 331  HPSYIEATPTMNPRVRVLCDIVGTVPAAEIETALARCGVSPLPEYAEEVLKHSYEFPAAA 510
            H + ++    ++   R L DI+  V   ++E+AL+  G++   +   EVLK SY  PA+A
Sbjct: 25   HSNGVDIDIDISQSARTLSDILTRVSPHDMESALSSTGINLTCDIIHEVLKLSYSNPASA 84

Query: 511  VKFFKWTGSLNRHTQYSWNLMVDLLGKNGLFETMWDAIRSMKQENVLSMATFASVFGSYC 690
            V+FF+W G    HT YSWNLMVDLLGKN LFE MWDAIRSMKQENVLSMATFASVFGSYC
Sbjct: 85   VEFFRWAGRSGTHTPYSWNLMVDLLGKNQLFEAMWDAIRSMKQENVLSMATFASVFGSYC 144

Query: 691  IAGKFSEAVMSFDVLDRYGIQQDVIAVNSLLSAICREENQTYKALEFFEKIKMKIAPDAD 870
             AG FSEA+MSFD++D+YGIQQDVIAVNSLLSAIC E+NQT KA+EFF++IK+KI PD D
Sbjct: 145  KAGSFSEAIMSFDIMDKYGIQQDVIAVNSLLSAICNEDNQTIKAVEFFDRIKLKIPPDGD 204

Query: 871  TFAILLEGWEKEGNAAKAKNTFGEMVIRVGWSPQNMSAYDAFLTTLVRGAQADEAIKFLH 1050
            T+AILLEGWEKEGNAAKAKN FGEMVI VGWSP+NM AY+AFL  LVR +Q D+A  FL 
Sbjct: 205  TYAILLEGWEKEGNAAKAKNIFGEMVIHVGWSPENMPAYNAFLNLLVRESQTDDAFDFLR 264

Query: 1051 VMKGKNCLPGMKFFSNALDILVKQNDSSQAVPLWEIMVGSGLLPSLIMYNAMIGLLCNNS 1230
            +MK K CLPG+KF+S+ALD+L+K+ND   AVP+W+IMV +GL+P+L+MYN+MIGLLCNN+
Sbjct: 265  LMKEKGCLPGLKFYSDALDMLLKRNDVLHAVPMWDIMVDTGLMPNLLMYNSMIGLLCNNN 324

Query: 1231 DFDNALRLLDEMAFRGAFPDSLTYNMIFQCLIKNKKVRQAANFFNEMMKNEQPPTHANCX 1410
            D DNA RL D+M F GAFPD LTY MIF+CL+KNKKV QAA+FF+EM+KNE PPTH +C 
Sbjct: 325  DIDNAFRLFDDMVFHGAFPDFLTYKMIFRCLVKNKKVSQAASFFHEMIKNENPPTHLDCA 384

Query: 1411 XXXXXXXXXXXPETAVEVWVSMMINLVYPADDSSNELLIGLCGLGRLSEVRKFFDDMLDR 1590
                       PE A+E+W  M+ +   P D+S+N LL+GL  LGRLSEV +F +DMLDR
Sbjct: 385  AAITMFMGGDDPEMAIEIWNYMVDDQELPLDESANALLVGLGNLGRLSEVSRFAEDMLDR 444

Query: 1591 RINIYESTMKKLKNAFYKKGRSGEDIYYHLSKKWKA 1698
            RINI+ESTM KLK +FYK+GRS  D +  LS+KWKA
Sbjct: 445  RINIHESTMAKLKASFYKEGRSSRDRFDSLSRKWKA 480


>ref|XP_003548696.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
            mitochondrial-like [Glycine max]
          Length = 488

 Score =  576 bits (1485), Expect = e-162
 Identities = 277/459 (60%), Positives = 347/459 (75%)
 Frame = +1

Query: 322  PQNHPSYIEATPTMNPRVRVLCDIVGTVPAAEIETALARCGVSPLPEYAEEVLKHSYEFP 501
            P   PS+++A P ++   R LCDI+      +IE+AL+  G+ P  E   EVL+ SY +P
Sbjct: 27   PNQFPSHLDA-PNVSSTARALCDILTRSSPQDIESALSSSGIVPEEECTNEVLRLSYNYP 85

Query: 502  AAAVKFFKWTGSLNRHTQYSWNLMVDLLGKNGLFETMWDAIRSMKQENVLSMATFASVFG 681
            ++AVKFF+W G   +H  ++WNLMVDLLGKN LFE MWDA+RSMKQE  LS++TFASVF 
Sbjct: 86   SSAVKFFRWAGRGKKHPVHTWNLMVDLLGKNQLFEPMWDAVRSMKQEQKLSLSTFASVFQ 145

Query: 682  SYCIAGKFSEAVMSFDVLDRYGIQQDVIAVNSLLSAICREENQTYKALEFFEKIKMKIAP 861
            SYC A +F+EAVMSFDV+DRYG++QDV+AVNSLLSAIC E+NQT   LEFFE IK K+ P
Sbjct: 146  SYCTAARFNEAVMSFDVMDRYGVKQDVVAVNSLLSAICSEDNQTSFGLEFFEGIKAKVPP 205

Query: 862  DADTFAILLEGWEKEGNAAKAKNTFGEMVIRVGWSPQNMSAYDAFLTTLVRGAQADEAIK 1041
            D DTFAILLEGWEKEGNAAKAK TFG+MV  +GW+  N++AYDAFL TL+R    D+ ++
Sbjct: 206  DGDTFAILLEGWEKEGNAAKAKTTFGDMVAHIGWNKDNVAAYDAFLMTLLRAGLMDDVVR 265

Query: 1042 FLHVMKGKNCLPGMKFFSNALDILVKQNDSSQAVPLWEIMVGSGLLPSLIMYNAMIGLLC 1221
            FL VMK  +C PG+KFF+ ALD LVKQND+  AVP+W++MV   L+P+LIMYNAMIGLLC
Sbjct: 266  FLQVMKDHDCFPGLKFFTTALDFLVKQNDADHAVPVWDVMVSGELVPNLIMYNAMIGLLC 325

Query: 1222 NNSDFDNALRLLDEMAFRGAFPDSLTYNMIFQCLIKNKKVRQAANFFNEMMKNEQPPTHA 1401
            NN+  D+A RLLDEMAF GAFPDSLTYNMIF+CL+KNKK R+   FF EM+KNE PPT +
Sbjct: 326  NNAAVDHAFRLLDEMAFHGAFPDSLTYNMIFECLVKNKKARETERFFAEMVKNEWPPTGS 385

Query: 1402 NCXXXXXXXXXXXXPETAVEVWVSMMINLVYPADDSSNELLIGLCGLGRLSEVRKFFDDM 1581
            NC            PE A E+W  ++ N V P D+S+N LLIGLC + R +EV++F +D+
Sbjct: 386  NCAAAIAMLFDCDDPEAAHEIWSYVVENRVKPLDESANALLIGLCNMSRFTEVKRFAEDI 445

Query: 1582 LDRRINIYESTMKKLKNAFYKKGRSGEDIYYHLSKKWKA 1698
            LDRRINIY+STM  LK+AFYK+GRS  D Y  L ++WKA
Sbjct: 446  LDRRINIYQSTMSILKDAFYKEGRSARDRYDSLYRRWKA 484


>ref|XP_003629008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355523030|gb|AET03484.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  550 bits (1417), Expect = e-154
 Identities = 271/466 (58%), Positives = 347/466 (74%), Gaps = 7/466 (1%)
 Frame = +1

Query: 322  PQNHPSYIEATPTMNPRVRVLCDIVGTVPAAEIETALARCGVSPLPEYAEEVLKHSYEFP 501
            P   PS+++ TP ++   R LC+++      +I+ AL+  G+ P  E   EVLK SY +P
Sbjct: 38   PNEFPSHLD-TPNVSSTARTLCNLLTRTSPQDIDNALSSSGIHPSEECVHEVLKLSYNYP 96

Query: 502  AAAVKFFKWTGSLNRHTQYSWNLMVDLLGKNGLFETMWDAIRSMKQENVLSMATFASVFG 681
            ++A+KFF+W G L +H+ ++WNLMVDLLG+N LFE MWDA+R+MKQE VLS+ TF SVF 
Sbjct: 97   SSAIKFFRWAGRLRKHSAHAWNLMVDLLGRNQLFEPMWDAVRTMKQEGVLSLPTFVSVFQ 156

Query: 682  SYCIAGKFSEAVMSFDVLDRYGIQQDVIAVNSLLSAICREENQTYKALEFFEKI-----K 846
            SYC+AG+ +EAVMSFDV+D+Y I ++V+AVNSLLSAICREENQT   +EF EK      +
Sbjct: 157  SYCMAGRVNEAVMSFDVMDKYDIDKNVVAVNSLLSAICREENQTSVGVEFLEKKVTGKDE 216

Query: 847  MKIAPDADTFAILLEGWEKEGNAAKAKNTFGEMVIRVGWSPQNMSAYDAFLTTLVRGAQA 1026
             KI  D D++AILLEGWEKEGNA KAK TFGEMVIRVGWS  N++AYDAFL TL+R  Q 
Sbjct: 217  GKIELDGDSYAILLEGWEKEGNATKAKTTFGEMVIRVGWSQDNVAAYDAFLMTLLRALQF 276

Query: 1027 DEAIKFLHVMKGKNCLPGMKFFSNALDILVKQNDSSQAVPLWEIMVGSGLLPSLIMYNAM 1206
            DE + FL VMK  +C PG+KFF+NALD+LVK+ND++ A+PLW++MV SGLLP+LIMYNAM
Sbjct: 277  DEVVGFLKVMKDHDCFPGLKFFTNALDVLVKRNDAAHAIPLWDVMVVSGLLPNLIMYNAM 336

Query: 1207 IGLLCNNSDFDNALRLLDEMAFRGAFPDSLTYNMIFQCLIKNKKVRQAANFFNEMMKNEQ 1386
            IGLLCNN + D+A RLLDEM   GAFPDSLTYNMIF+CL+KNKKVR+   FF EM+KNE 
Sbjct: 337  IGLLCNNDEIDHAFRLLDEMVLHGAFPDSLTYNMIFECLVKNKKVRETERFFAEMIKNEW 396

Query: 1387 PPTHANCXXXXXXXXXXXXPETAVEVWVSMMINLVYPADDSSNELLIGLCGLGRLSEVRK 1566
             PT +NC            P+ A+E+W  M+   V   D S+N +LIGLC L RLSEVR+
Sbjct: 397  LPTTSNCAVAIEMLFNCDDPDAALEIWSYMVETRVRVLDVSANMVLIGLCKLKRLSEVRR 456

Query: 1567 FFDDMLDRRINIYESTMKKLKNAFYKKGR--SGEDIYYHLSKKWKA 1698
            F ++MLD+RI+IY+STM KLK AFYK+ R  S  D +  + ++WKA
Sbjct: 457  FAEEMLDKRISIYDSTMNKLKEAFYKESRSSSARDKFDAIYRRWKA 502


>ref|XP_002269803.2| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
            mitochondrial-like [Vitis vinifera]
            gi|296085476|emb|CBI29208.3| unnamed protein product
            [Vitis vinifera]
          Length = 464

 Score =  535 bits (1378), Expect = e-149
 Identities = 257/445 (57%), Positives = 324/445 (72%)
 Frame = +1

Query: 361  MNPRVRVLCDIVGTVPAAEIETALARCGVSPLPEYAEEVLKHSYEFPAAAVKFFKWTGSL 540
            ++P  + L  I+       +  AL+   + P P+  ++VL+ SY   +AAV+FF+W G  
Sbjct: 13   ISPDAKTLLQIISATAPHALVAALSATSIPPTPDVVQDVLRLSYSNSSAAVEFFRWAGLT 72

Query: 541  NRHTQYSWNLMVDLLGKNGLFETMWDAIRSMKQENVLSMATFASVFGSYCIAGKFSEAVM 720
             +H+ +SWNL+VDLLGKN  FE MWDAIRSM+ E  LS++ F SVFGSYC  G+ +EA+M
Sbjct: 73   RKHSAHSWNLIVDLLGKNSKFEPMWDAIRSMRNEGALSLSAFISVFGSYCSVGRVNEAIM 132

Query: 721  SFDVLDRYGIQQDVIAVNSLLSAICREENQTYKALEFFEKIKMKIAPDADTFAILLEGWE 900
            SF+V+DRYGI  DV A+N+LLSAIC E   T  ALEFFEKIK+KI PD DTF ILLEGWE
Sbjct: 133  SFEVMDRYGIPPDVAAMNALLSAICCEGGSTTLALEFFEKIKVKITPDGDTFMILLEGWE 192

Query: 901  KEGNAAKAKNTFGEMVIRVGWSPQNMSAYDAFLTTLVRGAQADEAIKFLHVMKGKNCLPG 1080
            +EGN  KAK+TFGEMV+R+GWSPQNM AY++ L TLVRG + +EAIKFL VMKGK CLPG
Sbjct: 193  REGNVTKAKSTFGEMVVRLGWSPQNMVAYNSVLMTLVRGMEVEEAIKFLLVMKGKGCLPG 252

Query: 1081 MKFFSNALDILVKQNDSSQAVPLWEIMVGSGLLPSLIMYNAMIGLLCNNSDFDNALRLLD 1260
            +KFFSNALD+L+KQNDS+ A+ LW+IM+  G +P+L+MYN +IG+LCN  D DNA R LD
Sbjct: 253  LKFFSNALDVLLKQNDSTHAIALWDIMLDGGFMPNLMMYNTIIGILCNAGDADNAFRFLD 312

Query: 1261 EMAFRGAFPDSLTYNMIFQCLIKNKKVRQAANFFNEMMKNEQPPTHANCXXXXXXXXXXX 1440
            EM F G F DS TYNMIFQCL+K+KKV +A  FF EM+KNE PP  +NC           
Sbjct: 313  EMVFYGVFADSFTYNMIFQCLVKHKKVHEAGKFFIEMIKNECPPMPSNCAAAIAMCFDGD 372

Query: 1441 XPETAVEVWVSMMINLVYPADDSSNELLIGLCGLGRLSEVRKFFDDMLDRRINIYESTMK 1620
             PE A+E+W  M+ N + P D+S+N LLIGLC L R S+ R+F +DMLD +I I+ESTM+
Sbjct: 373  DPEMAIEIWSYMIENSLSPVDESANALLIGLCNLRRFSDYRRFAEDMLDMKIKIHESTME 432

Query: 1621 KLKNAFYKKGRSGEDIYYHLSKKWK 1695
            KLKNA YK GRS  D    L K+WK
Sbjct: 433  KLKNARYKDGRSARDTCDSLWKRWK 457