BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00020914
         (359 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN59994.1| hypothetical protein VITISV_012660 [Vitis vinifera]   167   8e-40
ref|XP_002267928.1| PREDICTED: pentatricopeptide repeat-containi...   166   2e-39
ref|XP_002513583.1| pentatricopeptide repeat-containing protein,...   158   4e-37
ref|XP_003528496.1| PREDICTED: pentatricopeptide repeat-containi...   151   5e-35
ref|XP_004170508.1| PREDICTED: pentatricopeptide repeat-containi...   145   4e-33

>emb|CAN59994.1| hypothetical protein VITISV_012660 [Vitis vinifera]
          Length = 768

 Score =  167 bits (423), Expect = 8e-40
 Identities = 79/119 (66%), Positives = 98/119 (82%)
 Frame = -1

Query: 359 IFNVLVEKNSVSYNLMIKGYAMSGRVEDSKRLFRKMPERTIVTLNTMITVYCRNGALDEA 180
           +FN + E N VSYNLMIKGYA+ G+++DSKRLF KMP RTI + NTMI+VY RNG +D+A
Sbjct: 360 VFNGMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFSSNTMISVYSRNGEIDKA 419

Query: 179 LELFEQTKGDRNTVTWNSMISGYTLSDQPEEAIKLYVAMQRLPVARSRSTFSTLFHACS 3
           LELFE+TK +++ VTWNSMISGY  S QPEEA+KLY+ M RL + ++RSTFS LFHACS
Sbjct: 420 LELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTRSTFSALFHACS 478


>ref|XP_002267928.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
           gi|302143682|emb|CBI22543.3| unnamed protein product
           [Vitis vinifera]
          Length = 728

 Score =  166 bits (419), Expect = 2e-39
 Identities = 78/119 (65%), Positives = 98/119 (82%)
 Frame = -1

Query: 359 IFNVLVEKNSVSYNLMIKGYAMSGRVEDSKRLFRKMPERTIVTLNTMITVYCRNGALDEA 180
           +FN + E N VSYNLMIKGYA+ G+++DSKRLF KMP RTI + NTMI+VY RNG +D+A
Sbjct: 320 VFNGMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFSSNTMISVYSRNGEIDKA 379

Query: 179 LELFEQTKGDRNTVTWNSMISGYTLSDQPEEAIKLYVAMQRLPVARSRSTFSTLFHACS 3
           LELFE+TK +++ VTWNSMISGY  S QPEEA+KLY+ M RL + +++STFS LFHACS
Sbjct: 380 LELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTQSTFSALFHACS 438


>ref|XP_002513583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223547491|gb|EEF48986.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 567

 Score =  158 bits (400), Expect = 4e-37
 Identities = 79/119 (66%), Positives = 93/119 (78%)
 Frame = -1

Query: 359 IFNVLVEKNSVSYNLMIKGYAMSGRVEDSKRLFRKMPERTIVTLNTMITVYCRNGALDEA 180
           IFN   EKNS   NLM+K Y+MSGRVEDSK LF KMP++TI++ NTMI+VY RNG LD+A
Sbjct: 323 IFNRATEKNSALCNLMVKAYSMSGRVEDSKTLFEKMPQKTIISSNTMISVYSRNGELDKA 382

Query: 179 LELFEQTKGDRNTVTWNSMISGYTLSDQPEEAIKLYVAMQRLPVARSRSTFSTLFHACS 3
           L LFEQTK  RN VTWNSM+SGY  ++Q EEA+KLYV M+R  V  +RSTFS LF ACS
Sbjct: 383 LMLFEQTKDQRNPVTWNSMLSGYVQNEQHEEALKLYVTMKRSSVDCTRSTFSVLFRACS 441


>ref|XP_003528496.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 728

 Score =  151 bits (382), Expect = 5e-35
 Identities = 75/119 (63%), Positives = 94/119 (78%)
 Frame = -1

Query: 359 IFNVLVEKNSVSYNLMIKGYAMSGRVEDSKRLFRKMPERTIVTLNTMITVYCRNGALDEA 180
           +F  L E N VSYNLMIKGYAMSG+ E SKRLF KM    + +LNTMI+VY +NG LDEA
Sbjct: 330 VFYELRETNPVSYNLMIKGYAMSGQFEKSKRLFEKMSPENLTSLNTMISVYSKNGELDEA 389

Query: 179 LELFEQTKGDRNTVTWNSMISGYTLSDQPEEAIKLYVAMQRLPVARSRSTFSTLFHACS 3
           ++LF++TKG+RN V+WNSM+SGY ++ + +EA+ LYVAM+RL V  SRSTFS LF ACS
Sbjct: 390 VKLFDKTKGERNYVSWNSMMSGYIINGKYKEALNLYVAMRRLSVDYSRSTFSVLFRACS 448


>ref|XP_004170508.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Cucumis sativus]
          Length = 710

 Score =  145 bits (365), Expect = 4e-33
 Identities = 73/119 (61%), Positives = 88/119 (73%)
 Frame = -1

Query: 359 IFNVLVEKNSVSYNLMIKGYAMSGRVEDSKRLFRKMPERTIVTLNTMITVYCRNGALDEA 180
           IF  L EKN VSYNLM+KGYA SGR+E SKRLF +M  +T  +LNTMI+VY RNG +D+A
Sbjct: 325 IFCKLREKNPVSYNLMLKGYATSGRIEGSKRLFERMTHKTTSSLNTMISVYSRNGEIDKA 384

Query: 179 LELFEQTKGDRNTVTWNSMISGYTLSDQPEEAIKLYVAMQRLPVARSRSTFSTLFHACS 3
            +LFE  K + + VTWNSMISGY  + Q E A+KLY+ M R  V RSRSTFS LF AC+
Sbjct: 385 FKLFESVKSEGDPVTWNSMISGYIQNHQHEGALKLYITMCRTSVERSRSTFSALFQACT 443