BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00020873
         (269 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]         86   4e-15
ref|NP_178983.1| pentatricopeptide repeat-containing protein [Ar...    85   5e-15
ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containi...    84   9e-15
ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [S...    84   1e-14
ref|XP_002301797.1| predicted protein [Populus trichocarpa] gi|2...    84   1e-14

>gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 40/89 (44%), Positives = 60/89 (67%)
 Frame = -3

Query: 267 QNGLVYEALEFFARMVREGIRPNGITLSSVLSACSKLMVVNLGKSVHGFSIRNDVFKDDV 88
           QNG   EAL+ F +M  EGI+ N IT+S+ LSAC+ L  +  GK +HG +I+  + K D+
Sbjct: 522 QNGKPQEALDLFRQMCMEGIKYNNITISAALSACASLPAIYYGKEIHGVTIKGPI-KADI 580

Query: 87  VLKTAFVDMYAKCRNLDYGIRIFDGMKEK 1
             ++A +DMYAKC NL+  +R+F+ M +K
Sbjct: 581 FAESALIDMYAKCGNLELALRVFEFMPDK 609



 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 33/88 (37%), Positives = 56/88 (63%)
 Frame = -3

Query: 264 NGLVYEALEFFARMVREGIRPNGITLSSVLSACSKLMVVNLGKSVHGFSIRNDVFKDDVV 85
           NG+  EAL+ F  ++ + I+PN +T++SVL  C+ +  + LG+ +HG+ +RN  ++    
Sbjct: 422 NGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRN-AYERKCY 480

Query: 84  LKTAFVDMYAKCRNLDYGIRIFDGMKEK 1
           +++A +DMYAKC  LD    IF  M +K
Sbjct: 481 VESALMDMYAKCGRLDLSHYIFLKMSQK 508



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 38/87 (43%), Positives = 51/87 (58%)
 Frame = -3

Query: 267 QNGLVYEALEFFARMVREGIRPNGITLSSVLSACSKLMVVNLGKSVHGFSIRNDVFKDDV 88
           QNGL  EA   F  M R G RP+ ITL S+L A + L  +  GK VHG+ +RN V   DV
Sbjct: 320 QNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCV-NMDV 378

Query: 87  VLKTAFVDMYAKCRNLDYGIRIFDGMK 7
            L +A VD+Y KCR++     ++D  +
Sbjct: 379 FLVSALVDIYFKCRDVRMAQNLYDAAR 405


>ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g13600 gi|4558664|gb|AAD22682.1| hypothetical protein
           [Arabidopsis thaliana] gi|330251150|gb|AEC06244.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 697

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 38/86 (44%), Positives = 56/86 (65%)
 Frame = -3

Query: 267 QNGLVYEALEFFARMVREGIRPNGITLSSVLSACSKLMVVNLGKSVHGFSIRNDVFKDDV 88
           QNG   EAL+ F  M+   + P+ +TL+SV+SAC+ L  + +G+ VHG  ++ND  ++D+
Sbjct: 230 QNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDI 289

Query: 87  VLKTAFVDMYAKCRNLDYGIRIFDGM 10
           +L  AFVDMYAKC  +     IFD M
Sbjct: 290 ILSNAFVDMYAKCSRIKEARFIFDSM 315



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 37/83 (44%), Positives = 50/83 (60%)
 Frame = -3

Query: 249 EALEFFARMVREGIRPNGITLSSVLSACSKLMVVNLGKSVHGFSIRNDVFKDDVVLKTAF 70
           EAL +FA M +EG   N  + +SVLSACS L  +N G  VH   I    F  DV + +A 
Sbjct: 135 EALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSL-IAKSPFLSDVYIGSAL 193

Query: 69  VDMYAKCRNLDYGIRIFDGMKEK 1
           VDMY+KC N++   R+FD M ++
Sbjct: 194 VDMYSKCGNVNDAQRVFDEMGDR 216



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
 Frame = -3

Query: 267 QNGLVYEALEFFARMVREGIRPNGITLSSVLSACSKLMVVNLGKSV------HGFSIRND 106
           QNG   EAL  F  + RE + P   + +++L AC+ L  ++LG         HGF  ++ 
Sbjct: 363 QNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSG 422

Query: 105 VFKDDVVLKTAFVDMYAKCRNLDYGIRIFDGMKEK 1
             +DD+ +  + +DMY KC  ++ G  +F  M E+
Sbjct: 423 E-EDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMER 456


>ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 849

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 38/89 (42%), Positives = 60/89 (67%)
 Frame = -3

Query: 267 QNGLVYEALEFFARMVREGIRPNGITLSSVLSACSKLMVVNLGKSVHGFSIRNDVFKDDV 88
           QNG   EAL+ F +M+ EG++ N +T+SS+LSAC+ L  +  GK +HG  I+  + + D+
Sbjct: 528 QNGEPEEALDLFRQMIMEGVKYNNVTISSILSACAGLPAIYYGKEIHGIIIKGPI-RADL 586

Query: 87  VLKTAFVDMYAKCRNLDYGIRIFDGMKEK 1
             ++A +DMY KC NL+  +R+F+ M EK
Sbjct: 587 FAESALIDMYGKCGNLELALRVFEHMPEK 615



 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 36/87 (41%), Positives = 54/87 (62%)
 Frame = -3

Query: 267 QNGLVYEALEFFARMVREGIRPNGITLSSVLSACSKLMVVNLGKSVHGFSIRNDVFKDDV 88
           QNGLV +AL  F  M + G++P+ +TL+S+L A ++L     GK +HG+ +RN     DV
Sbjct: 326 QNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHV-DV 384

Query: 87  VLKTAFVDMYAKCRNLDYGIRIFDGMK 7
            L +A VD+Y KCR++     +FD  K
Sbjct: 385 FLVSALVDIYFKCRDVRMAQNVFDATK 411



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 26/88 (29%), Positives = 52/88 (59%)
 Frame = -3

Query: 264 NGLVYEALEFFARMVREGIRPNGITLSSVLSACSKLMVVNLGKSVHGFSIRNDVFKDDVV 85
           N +   A++ F  ++  GI+PN + ++S L AC+ +  + +G+ +HG+ ++N  ++    
Sbjct: 428 NRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKN-AYEGRCY 486

Query: 84  LKTAFVDMYAKCRNLDYGIRIFDGMKEK 1
           +++A +DMY+KC  LD    +F  M  K
Sbjct: 487 VESALMDMYSKCGRLDLSHYMFSKMSAK 514


>ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
           gi|241920207|gb|EER93351.1| hypothetical protein
           SORBIDRAFT_01g006260 [Sorghum bicolor]
          Length = 862

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 39/89 (43%), Positives = 59/89 (66%)
 Frame = -3

Query: 267 QNGLVYEALEFFARMVREGIRPNGITLSSVLSACSKLMVVNLGKSVHGFSIRNDVFKDDV 88
           QNG   EAL+ F +M  EGI+ N +T+SS LSAC+ L  +  GK +HG  I+  + K D+
Sbjct: 522 QNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEIHGVIIKGPI-KADI 580

Query: 87  VLKTAFVDMYAKCRNLDYGIRIFDGMKEK 1
             ++A +DMYAKC N++  +R+F+ M +K
Sbjct: 581 FAESALIDMYAKCGNMELALRVFEFMPDK 609



 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 33/88 (37%), Positives = 56/88 (63%)
 Frame = -3

Query: 264 NGLVYEALEFFARMVREGIRPNGITLSSVLSACSKLMVVNLGKSVHGFSIRNDVFKDDVV 85
           NG+  +AL+ F  ++ + I+PN +T++SVL AC+ +  + LG+ +HG+ +RN  ++    
Sbjct: 422 NGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLRN-AYEGKCY 480

Query: 84  LKTAFVDMYAKCRNLDYGIRIFDGMKEK 1
           +++A +DMYAKC  LD    IF  M  K
Sbjct: 481 VESALMDMYAKCGRLDLSHYIFSKMSLK 508



 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 38/87 (43%), Positives = 53/87 (60%)
 Frame = -3

Query: 267 QNGLVYEALEFFARMVREGIRPNGITLSSVLSACSKLMVVNLGKSVHGFSIRNDVFKDDV 88
           QNGL+ EAL  F  M+R G RP+ +TL S+L A + L  +  GK VHG+ IRN V   D 
Sbjct: 320 QNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHM-DA 378

Query: 87  VLKTAFVDMYAKCRNLDYGIRIFDGMK 7
            L +A VD+Y KCR++     ++D  +
Sbjct: 379 FLVSALVDIYFKCRDVRTARNLYDAAR 405


>ref|XP_002301797.1| predicted protein [Populus trichocarpa] gi|222843523|gb|EEE81070.1|
           predicted protein [Populus trichocarpa]
          Length = 602

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 39/89 (43%), Positives = 60/89 (67%)
 Frame = -3

Query: 267 QNGLVYEALEFFARMVREGIRPNGITLSSVLSACSKLMVVNLGKSVHGFSIRNDVFKDDV 88
           QNG V EA++ F RM +EGI  +G+ +  ++ AC+ L  + LG SVHG ++R ++  DDV
Sbjct: 184 QNGNVLEAVDMFRRMRKEGIEGDGVLMLGLVQACANLGELKLGLSVHGHAVRREMLMDDV 243

Query: 87  VLKTAFVDMYAKCRNLDYGIRIFDGMKEK 1
           +L+T+ VDMYAK  +L+   R+F+ M  K
Sbjct: 244 ILQTSLVDMYAKIGDLELASRVFEQMPRK 272



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 35/84 (41%), Positives = 48/84 (57%)
 Frame = -3

Query: 267 QNGLVYEALEFFARMVREGIRPNGITLSSVLSACSKLMVVNLGKSVHGFSIRNDVFKDDV 88
           QNG    AL+    M     +P+   L S L ACS++  + LGKS+HG+ +R   F  ++
Sbjct: 286 QNGFAEYALDLLVEMQSLEFKPDTAVLVSALLACSQVGHLKLGKSIHGYIVRRLGF--EL 343

Query: 87  VLKTAFVDMYAKCRNLDYGIRIFD 16
           VL TA +DMYAKC +L     IFD
Sbjct: 344 VLGTALIDMYAKCGSLSCAHAIFD 367