BLASTX nr result
ID: Coptis25_contig00020858
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00020858 (624 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002327905.1| predicted protein [Populus trichocarpa] gi|2... 75 1e-11 ref|XP_002279294.1| PREDICTED: protein E6 [Vitis vinifera] gi|14... 72 8e-11 ref|XP_002517856.1| Protein E6, putative [Ricinus communis] gi|2... 70 3e-10 ref|XP_002509433.1| conserved hypothetical protein [Ricinus comm... 68 2e-09 ref|XP_002275180.1| PREDICTED: protein E6-like [Vitis vinifera] 67 2e-09 >ref|XP_002327905.1| predicted protein [Populus trichocarpa] gi|222837314|gb|EEE75693.1| predicted protein [Populus trichocarpa] Length = 373 Score = 75.1 bits (183), Expect = 1e-11 Identities = 47/123 (38%), Positives = 64/123 (52%), Gaps = 1/123 (0%) Frame = +3 Query: 39 NNGYKTKEFSMSDSRFLDXXXXXXXXXRETKQYSTSDTSFPENANYNKNYREDSLSNKMQ 218 NNGY+T+ MSD+RF++ + T++ SDT E Y N + N + Sbjct: 248 NNGYETERQGMSDTRFMEGGKYYYHV-KNTERQGMSDTRSMEGGKYYSNVK-----NTER 301 Query: 219 EGLSDTRFMENGRYFYNVNNENSY-LNEYQPVSRSYNGFKPSQGIDSWNKYSYGNKENTY 395 +G+SDTRFME G+Y+ NV NEN Y NEY S + + N+ SYGN EN Sbjct: 302 QGMSDTRFMEGGKYYSNVKNENYYPANEY-----------VSGKVSTQNQGSYGNDENPN 350 Query: 396 EVN 404 E N Sbjct: 351 EFN 353 >ref|XP_002279294.1| PREDICTED: protein E6 [Vitis vinifera] gi|147778580|emb|CAN60306.1| hypothetical protein VITISV_005068 [Vitis vinifera] Length = 253 Score = 72.0 bits (175), Expect = 8e-11 Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 4/128 (3%) Frame = +3 Query: 42 NGYKTKEFSMSDSRFLDXXXXXXXXXRETKQYSTSDTSFPENANYNKNYREDSLSNKMQE 221 N Y K+ + D+ D +S N N N N ++ N Q+ Sbjct: 115 NSYNAKQQGLKDTVLYDTGYTTMSNRNNYYNGDNVYSSSSSNNNNNNNNNNNNGYNTKQQ 174 Query: 222 GLSDTRFMENGRYFYNVNNENSYLNEYQPVSRSYNGFKPSQGIDSWNKYSY----GNKEN 389 G+SDTRF+ENGRY+Y++N+E +Y NEY+ Y+ + +N Y N EN Sbjct: 175 GMSDTRFLENGRYYYDLNSEKNYRNEYENSRTEYSR-------NEYNNRGYYGNNNNNEN 227 Query: 390 TYEVNNSM 413 +YE +NSM Sbjct: 228 SYEFDNSM 235 >ref|XP_002517856.1| Protein E6, putative [Ricinus communis] gi|223542838|gb|EEF44374.1| Protein E6, putative [Ricinus communis] Length = 290 Score = 70.1 bits (170), Expect = 3e-10 Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 2/129 (1%) Frame = +3 Query: 33 SGNNGYKTKEFSMSDSRFLDXXXXXXXXXRETKQYSTSDTSFPENAN-YNKNYREDSLSN 209 S NNGY T ++ ++ L Y+T+ T++ N N Y NY + Sbjct: 155 SNNNGY-TSNYNNNNGYELASGSYETGNQNNKNSYTTTTTNYNSNNNGYTNNYNSNGYEA 213 Query: 210 KMQEGLSDTRFMENGRYFYNVNNENSYLNEYQPVSRSYNGFKPSQGIDSWNKYSYGNKE- 386 ++G+SDTRFME G+Y+Y+ NN+N+Y Y P NG+ S+ + N+ +YGN E Sbjct: 214 DQRQGMSDTRFMEGGKYYYDANNDNNY---YPP-----NGY-TSREASAQNQVNYGNSEK 264 Query: 387 NTYEVNNSM 413 NT N+M Sbjct: 265 NTNNQFNTM 273 >ref|XP_002509433.1| conserved hypothetical protein [Ricinus communis] gi|223549332|gb|EEF50820.1| conserved hypothetical protein [Ricinus communis] Length = 217 Score = 67.8 bits (164), Expect = 2e-09 Identities = 39/103 (37%), Positives = 58/103 (56%), Gaps = 6/103 (5%) Frame = +3 Query: 123 ETKQYSTSDTSFPENANYNK--NYREDSLSNKMQEGLSDTRFMENGRYFYNVNNENSYLN 296 ET +S T+ NYN N + SN ++G+SDTR++ENG+Y+Y+ EN+Y + Sbjct: 97 ETSLQESSYTTMTNPNNYNNYNNNGANGYSNSERQGMSDTRYLENGKYYYDARGENNYYS 156 Query: 297 EYQPVSRSYNGFKPSQGIDSWNK----YSYGNKENTYEVNNSM 413 SR+ N + S ++ NK Y+ N ENTYE N+SM Sbjct: 157 NQYQNSRT-NNYDTSAYYNNNNKKNKNYNNNNNENTYEYNDSM 198 >ref|XP_002275180.1| PREDICTED: protein E6-like [Vitis vinifera] Length = 282 Score = 67.4 bits (163), Expect = 2e-09 Identities = 43/141 (30%), Positives = 71/141 (50%), Gaps = 7/141 (4%) Frame = +3 Query: 6 GMSDTSLPESGNNGYKTKEFSMSDSRFLDXXXXXXXXXRETKQYSTSDT---SFPENANY 176 GMSDT E+G YK +S + ++ YSTS + + ++++ Sbjct: 139 GMSDTRFLENGKYSYKPDTYSPNSNK------NGYSSSYRNNGYSTSSSHNNGYSTSSSH 192 Query: 177 NKNYREDSLSNK----MQEGLSDTRFMENGRYFYNVNNENSYLNEYQPVSRSYNGFKPSQ 344 N Y S N ++G+SDTRF+ENG+Y++++NNEN Y+ +G+ + Sbjct: 193 NNGYSTSSSYNNGYSTEKQGMSDTRFLENGKYYHDLNNENHYV----------DGYNTEK 242 Query: 345 GIDSWNKYSYGNKENTYEVNN 407 G S N++ Y N EN+ E N+ Sbjct: 243 GSTS-NEFYYSNTENSNEFNS 262