BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00020858
         (624 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002327905.1| predicted protein [Populus trichocarpa] gi|2...    75   1e-11
ref|XP_002279294.1| PREDICTED: protein E6 [Vitis vinifera] gi|14...    72   8e-11
ref|XP_002517856.1| Protein E6, putative [Ricinus communis] gi|2...    70   3e-10
ref|XP_002509433.1| conserved hypothetical protein [Ricinus comm...    68   2e-09
ref|XP_002275180.1| PREDICTED: protein E6-like [Vitis vinifera]        67   2e-09

>ref|XP_002327905.1| predicted protein [Populus trichocarpa] gi|222837314|gb|EEE75693.1|
           predicted protein [Populus trichocarpa]
          Length = 373

 Score = 75.1 bits (183), Expect = 1e-11
 Identities = 47/123 (38%), Positives = 64/123 (52%), Gaps = 1/123 (0%)
 Frame = +3

Query: 39  NNGYKTKEFSMSDSRFLDXXXXXXXXXRETKQYSTSDTSFPENANYNKNYREDSLSNKMQ 218
           NNGY+T+   MSD+RF++         + T++   SDT   E   Y  N +     N  +
Sbjct: 248 NNGYETERQGMSDTRFMEGGKYYYHV-KNTERQGMSDTRSMEGGKYYSNVK-----NTER 301

Query: 219 EGLSDTRFMENGRYFYNVNNENSY-LNEYQPVSRSYNGFKPSQGIDSWNKYSYGNKENTY 395
           +G+SDTRFME G+Y+ NV NEN Y  NEY            S  + + N+ SYGN EN  
Sbjct: 302 QGMSDTRFMEGGKYYSNVKNENYYPANEY-----------VSGKVSTQNQGSYGNDENPN 350

Query: 396 EVN 404
           E N
Sbjct: 351 EFN 353


>ref|XP_002279294.1| PREDICTED: protein E6 [Vitis vinifera] gi|147778580|emb|CAN60306.1|
           hypothetical protein VITISV_005068 [Vitis vinifera]
          Length = 253

 Score = 72.0 bits (175), Expect = 8e-11
 Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 4/128 (3%)
 Frame = +3

Query: 42  NGYKTKEFSMSDSRFLDXXXXXXXXXRETKQYSTSDTSFPENANYNKNYREDSLSNKMQE 221
           N Y  K+  + D+   D                   +S   N N N N   ++  N  Q+
Sbjct: 115 NSYNAKQQGLKDTVLYDTGYTTMSNRNNYYNGDNVYSSSSSNNNNNNNNNNNNGYNTKQQ 174

Query: 222 GLSDTRFMENGRYFYNVNNENSYLNEYQPVSRSYNGFKPSQGIDSWNKYSY----GNKEN 389
           G+SDTRF+ENGRY+Y++N+E +Y NEY+     Y+        + +N   Y     N EN
Sbjct: 175 GMSDTRFLENGRYYYDLNSEKNYRNEYENSRTEYSR-------NEYNNRGYYGNNNNNEN 227

Query: 390 TYEVNNSM 413
           +YE +NSM
Sbjct: 228 SYEFDNSM 235


>ref|XP_002517856.1| Protein E6, putative [Ricinus communis] gi|223542838|gb|EEF44374.1|
           Protein E6, putative [Ricinus communis]
          Length = 290

 Score = 70.1 bits (170), Expect = 3e-10
 Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 2/129 (1%)
 Frame = +3

Query: 33  SGNNGYKTKEFSMSDSRFLDXXXXXXXXXRETKQYSTSDTSFPENAN-YNKNYREDSLSN 209
           S NNGY T  ++ ++   L               Y+T+ T++  N N Y  NY  +    
Sbjct: 155 SNNNGY-TSNYNNNNGYELASGSYETGNQNNKNSYTTTTTNYNSNNNGYTNNYNSNGYEA 213

Query: 210 KMQEGLSDTRFMENGRYFYNVNNENSYLNEYQPVSRSYNGFKPSQGIDSWNKYSYGNKE- 386
             ++G+SDTRFME G+Y+Y+ NN+N+Y   Y P     NG+  S+   + N+ +YGN E 
Sbjct: 214 DQRQGMSDTRFMEGGKYYYDANNDNNY---YPP-----NGY-TSREASAQNQVNYGNSEK 264

Query: 387 NTYEVNNSM 413
           NT    N+M
Sbjct: 265 NTNNQFNTM 273


>ref|XP_002509433.1| conserved hypothetical protein [Ricinus communis]
           gi|223549332|gb|EEF50820.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 217

 Score = 67.8 bits (164), Expect = 2e-09
 Identities = 39/103 (37%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
 Frame = +3

Query: 123 ETKQYSTSDTSFPENANYNK--NYREDSLSNKMQEGLSDTRFMENGRYFYNVNNENSYLN 296
           ET    +S T+     NYN   N   +  SN  ++G+SDTR++ENG+Y+Y+   EN+Y +
Sbjct: 97  ETSLQESSYTTMTNPNNYNNYNNNGANGYSNSERQGMSDTRYLENGKYYYDARGENNYYS 156

Query: 297 EYQPVSRSYNGFKPSQGIDSWNK----YSYGNKENTYEVNNSM 413
                SR+ N +  S   ++ NK    Y+  N ENTYE N+SM
Sbjct: 157 NQYQNSRT-NNYDTSAYYNNNNKKNKNYNNNNNENTYEYNDSM 198


>ref|XP_002275180.1| PREDICTED: protein E6-like [Vitis vinifera]
          Length = 282

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 43/141 (30%), Positives = 71/141 (50%), Gaps = 7/141 (4%)
 Frame = +3

Query: 6   GMSDTSLPESGNNGYKTKEFSMSDSRFLDXXXXXXXXXRETKQYSTSDT---SFPENANY 176
           GMSDT   E+G   YK   +S + ++                 YSTS +    +  ++++
Sbjct: 139 GMSDTRFLENGKYSYKPDTYSPNSNK------NGYSSSYRNNGYSTSSSHNNGYSTSSSH 192

Query: 177 NKNYREDSLSNK----MQEGLSDTRFMENGRYFYNVNNENSYLNEYQPVSRSYNGFKPSQ 344
           N  Y   S  N      ++G+SDTRF+ENG+Y++++NNEN Y+          +G+   +
Sbjct: 193 NNGYSTSSSYNNGYSTEKQGMSDTRFLENGKYYHDLNNENHYV----------DGYNTEK 242

Query: 345 GIDSWNKYSYGNKENTYEVNN 407
           G  S N++ Y N EN+ E N+
Sbjct: 243 GSTS-NEFYYSNTENSNEFNS 262