BLASTX nr result

ID: Coptis25_contig00020833 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00020833
         (769 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002326694.1| predicted protein [Populus trichocarpa] gi|2...   138   1e-30
ref|XP_002329544.1| predicted protein [Populus trichocarpa] gi|2...   134   3e-29
ref|XP_002282724.1| PREDICTED: uncharacterized protein LOC100257...   130   2e-28
emb|CAN64280.1| hypothetical protein VITISV_036896 [Vitis vinifera]   130   2e-28
ref|XP_003517388.1| PREDICTED: uncharacterized protein LOC100797...   128   1e-27

>ref|XP_002326694.1| predicted protein [Populus trichocarpa] gi|222834016|gb|EEE72493.1|
           predicted protein [Populus trichocarpa]
          Length = 157

 Score =  138 bits (347), Expect = 1e-30
 Identities = 78/157 (49%), Positives = 95/157 (60%), Gaps = 1/157 (0%)
 Frame = -1

Query: 667 RRPCFEEDDVGLACITSKEARSPNSNNTPFFXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 488
           RRPCF ++D GLA +   EA S + N+ PFF                             
Sbjct: 7   RRPCFIDEDDGLASLADMEAGS-SGNHHPFFSRSLCYARRGSFRNLSSLVSSPRSAR--- 62

Query: 487 RFYDTKCREQQLPHFLEACFLCKKPLGENRDIFMYRGDTPFCSEECRDEQIEIDEEKERN 308
            + D++  + Q PHFLEACFLCKK LG+NRDIFMYRGDTPFCSEECR EQI+IDE  E+N
Sbjct: 63  -YCDSRYEDHQ-PHFLEACFLCKKSLGDNRDIFMYRGDTPFCSEECRQEQIDIDEANEKN 120

Query: 307 LKFASSMKTIRKDKQTKSPT-NKSQNYHVRTSTVAAA 200
              +SSMK +RK  Q KS +  K+Q+Y  RT TVAAA
Sbjct: 121 WNLSSSMKALRKKDQKKSTSPTKAQDYPSRTGTVAAA 157


>ref|XP_002329544.1| predicted protein [Populus trichocarpa] gi|222870253|gb|EEF07384.1|
           predicted protein [Populus trichocarpa]
          Length = 157

 Score =  134 bits (336), Expect = 3e-29
 Identities = 76/156 (48%), Positives = 93/156 (59%), Gaps = 1/156 (0%)
 Frame = -1

Query: 667 RRPCFEEDDVGLACITSKEARSPNSNNTPFFXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 488
           +RPCF E+D GLA +    A   + N+ PFF                             
Sbjct: 7   KRPCFIEEDDGLASLADMGAGF-SGNHHPFFSRSLCYARRCSFRNLSSLVPSPRSAR--- 62

Query: 487 RFYDTKCREQQLPHFLEACFLCKKPLGENRDIFMYRGDTPFCSEECRDEQIEIDEEKERN 308
            F D++  + Q PHFLEACFLCKKPLG+NRDIFMYRGD PFCSEECR EQI+IDE KE+N
Sbjct: 63  -FCDSRFDDHQ-PHFLEACFLCKKPLGDNRDIFMYRGDMPFCSEECRQEQIDIDEAKEKN 120

Query: 307 LKFASSMKTIRKDKQTKSPT-NKSQNYHVRTSTVAA 203
              +SSMK +RK+ Q KS +  K+Q+Y  R  TVAA
Sbjct: 121 WNLSSSMKALRKNDQKKSTSPTKAQDYSSRAGTVAA 156


>ref|XP_002282724.1| PREDICTED: uncharacterized protein LOC100257499 [Vitis vinifera]
          Length = 157

 Score =  130 bits (328), Expect = 2e-28
 Identities = 63/95 (66%), Positives = 75/95 (78%)
 Frame = -1

Query: 484 FYDTKCREQQLPHFLEACFLCKKPLGENRDIFMYRGDTPFCSEECRDEQIEIDEEKERNL 305
           FYD +  + Q PHFLEACFLC KPLG+NRDI+MYRGDTPFCSEECR EQIE+DE  E+N 
Sbjct: 65  FYDARFEDHQ-PHFLEACFLCNKPLGDNRDIYMYRGDTPFCSEECRQEQIEMDEATEKN- 122

Query: 304 KFASSMKTIRKDKQTKSPTNKSQNYHVRTSTVAAA 200
           +  SS+K  RK+++T S  +KSQNY  RT TVAAA
Sbjct: 123 RSISSIKAFRKEQKTSSTPSKSQNYPFRTGTVAAA 157


>emb|CAN64280.1| hypothetical protein VITISV_036896 [Vitis vinifera]
          Length = 157

 Score =  130 bits (328), Expect = 2e-28
 Identities = 63/95 (66%), Positives = 75/95 (78%)
 Frame = -1

Query: 484 FYDTKCREQQLPHFLEACFLCKKPLGENRDIFMYRGDTPFCSEECRDEQIEIDEEKERNL 305
           FYD +  + Q PHFLEACFLC KPLG+NRDI+MYRGDTPFCSEECR EQIE+DE  E+N 
Sbjct: 65  FYDARFEDHQ-PHFLEACFLCNKPLGDNRDIYMYRGDTPFCSEECRQEQIEMDEATEKN- 122

Query: 304 KFASSMKTIRKDKQTKSPTNKSQNYHVRTSTVAAA 200
           +  SS+K  RK+++T S  +KSQNY  RT TVAAA
Sbjct: 123 RSISSIKAFRKEQKTSSTPSKSQNYPFRTGTVAAA 157


>ref|XP_003517388.1| PREDICTED: uncharacterized protein LOC100797178 [Glycine max]
          Length = 156

 Score =  128 bits (322), Expect = 1e-27
 Identities = 63/96 (65%), Positives = 74/96 (77%), Gaps = 1/96 (1%)
 Frame = -1

Query: 484 FYDTKCREQQLPHFLEACFLCKKPLGENRDIFMYRGDTPFCSEECRDEQIEIDEEKERNL 305
           FYD +  + Q PHFL+AC LCKKPLG+NRDIFMYRGDTPFCSEECR EQIE DE KE+N 
Sbjct: 62  FYDARFEDHQ-PHFLQACSLCKKPLGDNRDIFMYRGDTPFCSEECRQEQIERDEAKEKNK 120

Query: 304 KFASSMKTIRKDKQTKSPT-NKSQNYHVRTSTVAAA 200
             +SSMK +RK +Q  S + NK+Q+Y  R  TVAAA
Sbjct: 121 NLSSSMKALRKKEQRNSVSPNKTQDYSFRAGTVAAA 156


Top