BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00020813
         (2854 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI21038.3| unnamed protein product [Vitis vinifera]             1220   0.0  
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...  1220   0.0  
ref|XP_002324295.1| rna-dependent RNA polymerase [Populus tricho...  1210   0.0  
ref|XP_002308662.1| rna-dependent RNA polymerase [Populus tricho...  1188   0.0  
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...  1169   0.0  

>emb|CBI21038.3| unnamed protein product [Vitis vinifera]
          Length = 1035

 Score = 1220 bits (3157), Expect = 0.0
 Identities = 592/850 (69%), Positives = 701/850 (82%), Gaps = 1/850 (0%)
 Frame = +3

Query: 3    AVMHKGIINQFQLSDKFFELLRSQSKEVNIKALTHMYCYRRPVFDAYKRLKIVQNWLLKN 182
            AVMHKGIINQ QLSDKFF+LLRSQ K++NI AL H+  YR PVFDAY+RLK+V  WLLKN
Sbjct: 178  AVMHKGIINQHQLSDKFFDLLRSQQKDINIAALKHICSYRHPVFDAYQRLKLVHKWLLKN 237

Query: 183  PKGIKGSRVLDHNVEVHRLIITPTRAYCLPPEVELSNRVLRKYKESVDRFLRVTFMDEGF 362
            PK +K  + LD  VEV RL+ITP++AYCLPPEVELSNRVLR YKE  DRFLRVTFMDEG 
Sbjct: 238  PKLLKSPKELDDIVEVRRLVITPSKAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGM 297

Query: 363  DQLNINVLSYYVAPIVKDITSNSFPQKTAVFKRVKTILSEGFYLCGRKYSFLAFSSNQLR 542
              +N NVL+YYVAPIVK ITSNSFPQKT VFKRVKTIL++GFYLCGRKYSFLAFSSNQLR
Sbjct: 298  QTINANVLNYYVAPIVKVITSNSFPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLR 357

Query: 543  DRSAWFFAEDKKINVTDIKKWMGKFKNKNVAKCAARMGQCFSSTYETVKVPSKEVNFDFP 722
            DRSAWFFAEDKK +V  IK WMGKF N+NVAKCAARMGQCFSSTY TV+VPS EV  + P
Sbjct: 358  DRSAWFFAEDKKTSVRAIKSWMGKFTNRNVAKCAARMGQCFSSTYATVEVPSWEVK-ELP 416

Query: 723  DIERNDFVFSDGIGILTPDLAAEVAEKLQLTETPSAYQIRYAGCKGVIASWPGKDDGIRL 902
            DI+RN + FSDGIG + PDLA EVAEKL+L  TPSAYQIRYAGCKGV+A WP  +DGIRL
Sbjct: 417  DIKRNGYDFSDGIGKIVPDLAMEVAEKLKLEGTPSAYQIRYAGCKGVVACWPSDNDGIRL 476

Query: 903  YLRPSMNKFESSHNIIEVITWTRFQPGFLNRQVVTLLSSLGVPNEVFSKLQDSMVHNLDQ 1082
              RPSMNKF S H I+E+ +WTRFQPGFLNRQ+VTLLS+L VP+++F K+Q+SM+  L+Q
Sbjct: 477  SWRPSMNKFLSDHTILEICSWTRFQPGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQ 536

Query: 1083 MLTNPDIALDVIISSCGDEGNTAALMISGGFKPQIEPHLKEVISCIRASQLGDLLDKARI 1262
            MLT+ D+A DV+I+SC ++GNTAA+M+S GFKPQ EPHL+ +++CIRA+Q   L +KARI
Sbjct: 537  MLTDTDVAFDVLIASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARI 596

Query: 1263 FVSSAQWLMGCLDELGLLEQGQCFVQVSSPSLEDCFVKHGFKLSGPNSNLKVIKGTVVMA 1442
            FV S +WLMGCLDELG+LEQGQCF+QVSSPSLE+CF+KHG + S    NLKVIKG V +A
Sbjct: 597  FVPSGRWLMGCLDELGVLEQGQCFIQVSSPSLENCFLKHGSRFSA-QKNLKVIKGIVAIA 655

Query: 1443 KNPCLHPGDIRVLEAVDIPALHHLVDCLVFPQNGDRPHSNEASGSDLDGDLYFVTWDGNL 1622
            KNPCLHPGD+R+LEAVD P L HLVDCLVFPQ GDRPHSNEASGSDLDGDLYFVTW+  L
Sbjct: 656  KNPCLHPGDVRILEAVDAPGLEHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWEETL 715

Query: 1623 IPPSRESWPAMDYSPAEAKTLPRAVTYQDIIEFFSRNMVNENLGVICNAHVVHADQSEYG 1802
            IPPS++SWP M Y  AEAK L R VT  DII+FF++NMVNENLG ICNAHVVHAD+SEYG
Sbjct: 716  IPPSKQSWPPMQYDSAEAKALAREVTSLDIIDFFTKNMVNENLGAICNAHVVHADRSEYG 775

Query: 1803 AMDEKCIQLAELAATAVDSPKTGKFVIMPHLLKPKIYPDFMGKEDFMSYKSKKILGVLYR 1982
            A+DE C+ LAE AATAVD PKTGK V +P  LKPK+YPDFMGKE+F +Y+S KILG +YR
Sbjct: 776  ALDEACLDLAERAATAVDFPKTGKLVTLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYR 835

Query: 1983 KIKNAYEEEVLSSLDSPYDPEGIPYDADIEIACSNDLIQEAWIHKCSYDGKLNALLGQYK 2162
            +IK+AY E+V  S +  +  + +P+D D+ I  S D I +AWIHKCSYDG+LN LLGQYK
Sbjct: 836  QIKDAYNEDVSESSEQIFGADKVPFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYK 895

Query: 2163 VHSEAEVVSGHVWSMPRYNNRKQRELKEKLKNAYNALKKEFKNVFENVNPDLLEAQGDQK 2342
            V  E EVV+GHVWSMP+Y +RKQ EL E+LK+AY++LKKEF+ +FE +N D  +   D+K
Sbjct: 896  VKREEEVVTGHVWSMPKYKSRKQGELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEK 955

Query: 2343 IQMYEQKASAWYQVTYHPQWVKKSLELRRIEE-DDDRVPAFLSFAWIPAEYLVRIKIRQL 2519
             ++YEQKASAWYQVTYHP WVKKSLEL+  +E   +RV   LSFAWI A+YL RIKIR+ 
Sbjct: 956  NRLYEQKASAWYQVTYHPTWVKKSLELQNPDEVFGERV--MLSFAWITADYLARIKIRRK 1013

Query: 2520 GIDNLNTCQP 2549
            G  N+++ +P
Sbjct: 1014 GTGNVDSSKP 1023


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score = 1220 bits (3157), Expect = 0.0
 Identities = 592/850 (69%), Positives = 701/850 (82%), Gaps = 1/850 (0%)
 Frame = +3

Query: 3    AVMHKGIINQFQLSDKFFELLRSQSKEVNIKALTHMYCYRRPVFDAYKRLKIVQNWLLKN 182
            AVMHKGIINQ QLSDKFF+LLRSQ K++NI AL H+  YR PVFDAY+RLK+V  WLLKN
Sbjct: 340  AVMHKGIINQHQLSDKFFDLLRSQQKDINIAALKHICSYRHPVFDAYQRLKLVHKWLLKN 399

Query: 183  PKGIKGSRVLDHNVEVHRLIITPTRAYCLPPEVELSNRVLRKYKESVDRFLRVTFMDEGF 362
            PK +K  + LD  VEV RL+ITP++AYCLPPEVELSNRVLR YKE  DRFLRVTFMDEG 
Sbjct: 400  PKLLKSPKELDDIVEVRRLVITPSKAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGM 459

Query: 363  DQLNINVLSYYVAPIVKDITSNSFPQKTAVFKRVKTILSEGFYLCGRKYSFLAFSSNQLR 542
              +N NVL+YYVAPIVK ITSNSFPQKT VFKRVKTIL++GFYLCGRKYSFLAFSSNQLR
Sbjct: 460  QTINANVLNYYVAPIVKVITSNSFPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLR 519

Query: 543  DRSAWFFAEDKKINVTDIKKWMGKFKNKNVAKCAARMGQCFSSTYETVKVPSKEVNFDFP 722
            DRSAWFFAEDKK +V  IK WMGKF N+NVAKCAARMGQCFSSTY TV+VPS EV  + P
Sbjct: 520  DRSAWFFAEDKKTSVRAIKSWMGKFTNRNVAKCAARMGQCFSSTYATVEVPSWEVK-ELP 578

Query: 723  DIERNDFVFSDGIGILTPDLAAEVAEKLQLTETPSAYQIRYAGCKGVIASWPGKDDGIRL 902
            DI+RN + FSDGIG + PDLA EVAEKL+L  TPSAYQIRYAGCKGV+A WP  +DGIRL
Sbjct: 579  DIKRNGYDFSDGIGKIVPDLAMEVAEKLKLEGTPSAYQIRYAGCKGVVACWPSDNDGIRL 638

Query: 903  YLRPSMNKFESSHNIIEVITWTRFQPGFLNRQVVTLLSSLGVPNEVFSKLQDSMVHNLDQ 1082
              RPSMNKF S H I+E+ +WTRFQPGFLNRQ+VTLLS+L VP+++F K+Q+SM+  L+Q
Sbjct: 639  SWRPSMNKFLSDHTILEICSWTRFQPGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQ 698

Query: 1083 MLTNPDIALDVIISSCGDEGNTAALMISGGFKPQIEPHLKEVISCIRASQLGDLLDKARI 1262
            MLT+ D+A DV+I+SC ++GNTAA+M+S GFKPQ EPHL+ +++CIRA+Q   L +KARI
Sbjct: 699  MLTDTDVAFDVLIASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARI 758

Query: 1263 FVSSAQWLMGCLDELGLLEQGQCFVQVSSPSLEDCFVKHGFKLSGPNSNLKVIKGTVVMA 1442
            FV S +WLMGCLDELG+LEQGQCF+QVSSPSLE+CF+KHG + S    NLKVIKG V +A
Sbjct: 759  FVPSGRWLMGCLDELGVLEQGQCFIQVSSPSLENCFLKHGSRFSA-QKNLKVIKGIVAIA 817

Query: 1443 KNPCLHPGDIRVLEAVDIPALHHLVDCLVFPQNGDRPHSNEASGSDLDGDLYFVTWDGNL 1622
            KNPCLHPGD+R+LEAVD P L HLVDCLVFPQ GDRPHSNEASGSDLDGDLYFVTW+  L
Sbjct: 818  KNPCLHPGDVRILEAVDAPGLEHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWEETL 877

Query: 1623 IPPSRESWPAMDYSPAEAKTLPRAVTYQDIIEFFSRNMVNENLGVICNAHVVHADQSEYG 1802
            IPPS++SWP M Y  AEAK L R VT  DII+FF++NMVNENLG ICNAHVVHAD+SEYG
Sbjct: 878  IPPSKQSWPPMQYDSAEAKALAREVTSLDIIDFFTKNMVNENLGAICNAHVVHADRSEYG 937

Query: 1803 AMDEKCIQLAELAATAVDSPKTGKFVIMPHLLKPKIYPDFMGKEDFMSYKSKKILGVLYR 1982
            A+DE C+ LAE AATAVD PKTGK V +P  LKPK+YPDFMGKE+F +Y+S KILG +YR
Sbjct: 938  ALDEACLDLAERAATAVDFPKTGKLVTLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYR 997

Query: 1983 KIKNAYEEEVLSSLDSPYDPEGIPYDADIEIACSNDLIQEAWIHKCSYDGKLNALLGQYK 2162
            +IK+AY E+V  S +  +  + +P+D D+ I  S D I +AWIHKCSYDG+LN LLGQYK
Sbjct: 998  QIKDAYNEDVSESSEQIFGADKVPFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYK 1057

Query: 2163 VHSEAEVVSGHVWSMPRYNNRKQRELKEKLKNAYNALKKEFKNVFENVNPDLLEAQGDQK 2342
            V  E EVV+GHVWSMP+Y +RKQ EL E+LK+AY++LKKEF+ +FE +N D  +   D+K
Sbjct: 1058 VKREEEVVTGHVWSMPKYKSRKQGELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEK 1117

Query: 2343 IQMYEQKASAWYQVTYHPQWVKKSLELRRIEE-DDDRVPAFLSFAWIPAEYLVRIKIRQL 2519
             ++YEQKASAWYQVTYHP WVKKSLEL+  +E   +RV   LSFAWI A+YL RIKIR+ 
Sbjct: 1118 NRLYEQKASAWYQVTYHPTWVKKSLELQNPDEVFGERV--MLSFAWITADYLARIKIRRK 1175

Query: 2520 GIDNLNTCQP 2549
            G  N+++ +P
Sbjct: 1176 GTGNVDSSKP 1185


>ref|XP_002324295.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1200

 Score = 1210 bits (3131), Expect = 0.0
 Identities = 572/850 (67%), Positives = 699/850 (82%), Gaps = 1/850 (0%)
 Frame = +3

Query: 3    AVMHKGIINQFQLSDKFFELLRSQSKEVNIKALTHMYCYRRPVFDAYKRLKIVQNWLLKN 182
            AVMHKGI NQ QLS+ FF+LLR+Q  EVN+ AL H+  YRRPVF+AY+RLK VQ WLLKN
Sbjct: 341  AVMHKGIFNQHQLSNDFFDLLRNQHTEVNVSALKHICTYRRPVFNAYRRLKAVQEWLLKN 400

Query: 183  PKGIKGSRVLDHNVEVHRLIITPTRAYCLPPEVELSNRVLRKYKESVDRFLRVTFMDEGF 362
            P   K  + L   VE+ RL+ITPT+AYCLPPEVELSNRVLRKYK+  DRFLRVTFMDEG 
Sbjct: 401  PNLFKNPKQLGDVVEIRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGL 460

Query: 363  DQLNINVLSYYVAPIVKDITSNSFPQKTAVFKRVKTILSEGFYLCGRKYSFLAFSSNQLR 542
             ++N NVL+YYVAPIV+DITSNSFPQKT +FKRV++IL+EGFYLCGR+YSFLAFS+NQLR
Sbjct: 461  QRMNSNVLNYYVAPIVRDITSNSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLR 520

Query: 543  DRSAWFFAEDKKINVTDIKKWMGKFKNKNVAKCAARMGQCFSSTYETVKVPSKEVNFDFP 722
            D+SAWFF+E++ I+V D+K WMGKF N+N+AKCAARMGQCFSSTY T++VP +EVN D P
Sbjct: 521  DQSAWFFSEERNISVLDVKSWMGKFTNRNIAKCAARMGQCFSSTYATIEVPPEEVNSDLP 580

Query: 723  DIERNDFVFSDGIGILTPDLAAEVAEKLQLT-ETPSAYQIRYAGCKGVIASWPGKDDGIR 899
            DIERN +VFSDGIGI+TPDLA EVAEKL+L  + P AYQIRYAGCKGV+A WPGK DG+R
Sbjct: 581  DIERNGYVFSDGIGIITPDLAREVAEKLKLDIDPPCAYQIRYAGCKGVVACWPGKGDGVR 640

Query: 900  LYLRPSMNKFESSHNIIEVITWTRFQPGFLNRQVVTLLSSLGVPNEVFSKLQDSMVHNLD 1079
            L LRPSMNKF+S+H  +E+ +WTRFQPGFLNRQ++TLLS+L VP+ VF K+Q++MV  L+
Sbjct: 641  LSLRPSMNKFQSNHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLN 700

Query: 1080 QMLTNPDIALDVIISSCGDEGNTAALMISGGFKPQIEPHLKEVISCIRASQLGDLLDKAR 1259
            QM  N D+A DV+ +SC D+GN AA+M+S GFKP  EPHL+ +++C+RA+QL DL +K R
Sbjct: 701  QMFVNSDVAFDVLTASCADQGNVAAIMLSAGFKPDREPHLRGMLTCVRAAQLWDLREKTR 760

Query: 1260 IFVSSAQWLMGCLDELGLLEQGQCFVQVSSPSLEDCFVKHGFKLSGPNSNLKVIKGTVVM 1439
            IFV S +WLMGCLDELG+LEQGQCF+QVS+ SLE CF+KHG K S    NL+VIKGTVV+
Sbjct: 761  IFVPSGRWLMGCLDELGMLEQGQCFIQVSNSSLEKCFMKHGAKFSEAEKNLQVIKGTVVI 820

Query: 1440 AKNPCLHPGDIRVLEAVDIPALHHLVDCLVFPQNGDRPHSNEASGSDLDGDLYFVTWDGN 1619
            AKNPCLHPGD+RVLEAVD+P LHHL DCLVFPQ G+RPH+NEASGSDLDGDLYFVTWD N
Sbjct: 821  AKNPCLHPGDVRVLEAVDVPGLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDEN 880

Query: 1620 LIPPSRESWPAMDYSPAEAKTLPRAVTYQDIIEFFSRNMVNENLGVICNAHVVHADQSEY 1799
            LIPPS+ SW  M Y  AEAK L R V +QDIIEFF++NMVN+NLG ICNAHVVHAD SEY
Sbjct: 881  LIPPSKRSWIPMQYDAAEAKLLARPVNHQDIIEFFAKNMVNDNLGAICNAHVVHADLSEY 940

Query: 1800 GAMDEKCIQLAELAATAVDSPKTGKFVIMPHLLKPKIYPDFMGKEDFMSYKSKKILGVLY 1979
            GA D+ C+ LAELAATAVD PKTGK V MP  LKPK+YPDFMGKE++ SYKS+KILG LY
Sbjct: 941  GATDKNCLTLAELAATAVDFPKTGKVVSMPPYLKPKMYPDFMGKEEYQSYKSEKILGRLY 1000

Query: 1980 RKIKNAYEEEVLSSLDSPYDPEGIPYDADIEIACSNDLIQEAWIHKCSYDGKLNALLGQY 2159
            R+IK+AY+E+V +S +    P  IPYD+D+E+  ++D I +AW  KCSYDG+LN LL QY
Sbjct: 1001 RQIKDAYDEDVAASSELNLVPGDIPYDSDLEVVGASDYISDAWDQKCSYDGQLNGLLSQY 1060

Query: 2160 KVHSEAEVVSGHVWSMPRYNNRKQRELKEKLKNAYNALKKEFKNVFENVNPDLLEAQGDQ 2339
            KV  E EVV+GH+WSMP+Y++RKQ ELK++LK++YN+LKKEF+ +FE ++ +  + +  +
Sbjct: 1061 KVKREEEVVTGHIWSMPKYSSRKQGELKDRLKHSYNSLKKEFRQIFEKMDLEFEQLEDGE 1120

Query: 2340 KIQMYEQKASAWYQVTYHPQWVKKSLELRRIEEDDDRVPAFLSFAWIPAEYLVRIKIRQL 2519
            K ++YEQKASAWYQV YHP WVKKSLEL+  + D       LSFAWI A+YL RIKIR  
Sbjct: 1121 KNKLYEQKASAWYQVVYHPHWVKKSLELQ--DPDGAGTSVMLSFAWIAADYLARIKIRHR 1178

Query: 2520 GIDNLNTCQP 2549
               N+++ +P
Sbjct: 1179 ETGNVDSAKP 1188


>ref|XP_002308662.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1198

 Score = 1188 bits (3073), Expect = 0.0
 Identities = 570/851 (66%), Positives = 689/851 (80%), Gaps = 2/851 (0%)
 Frame = +3

Query: 3    AVMHKGIINQFQLSDKFFELLRSQSKEVNIKALTHMYCYRRPVFDAYKRLKIVQNWLLKN 182
            AVMHKGI NQ QLS+ FF+LLR+Q  EVN+ AL H+Y YRRPVFDAYK+LK+ Q WLLKN
Sbjct: 338  AVMHKGIFNQHQLSNDFFDLLRNQPTEVNVAALKHIYPYRRPVFDAYKKLKVAQEWLLKN 397

Query: 183  PKGIKGSRVLDHNVEVHRLIITPTRAYCLPPEVELSNRVLRKYKESVDRFLRVTFMDEGF 362
            PK  K  + LD   E+ RL+ITPT+AYCLPPEVELSNRVLRKYK+  DRFLRVTFMDEG 
Sbjct: 398  PKFFKNQKKLDDIAEIRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGL 457

Query: 363  DQLNINVLSYYVAPIVKDITSNSFPQKTAVFKRVKTILSEGFYLCGRKYSFLAFSSNQLR 542
              +N N L+Y+ APIV+ ITS SFPQKT +FKRV++IL+EGFYLCGR+YSFLAFSSNQLR
Sbjct: 458  QTMNSNALNYFAAPIVRAITSYSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLR 517

Query: 543  DRSAWFFAEDKKINVTDIKKWMGKFKNKNVAKCAARMGQCFSSTYETVKVPSKEVNFDFP 722
            DRSAWFFAED+ INV  IK WMGKF NKN+AKCAARMGQCFSSTY T++VP +EVN D P
Sbjct: 518  DRSAWFFAEDRNINVMAIKSWMGKFTNKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLP 577

Query: 723  DIERNDFVFSDGIGILTPDLAAEVAEKLQLT-ETPSAYQIRYAGCKGVIASWPGKDDGIR 899
            DI+RN + FSDGIG++TPDLA EVAEKL+   + P AYQIRYAGCKGV+A WP + DGIR
Sbjct: 578  DIKRNGYDFSDGIGMITPDLAREVAEKLKFDFDPPCAYQIRYAGCKGVVACWPEQGDGIR 637

Query: 900  LYLRPSMNKFESSHNIIEVITWTRFQPGFLNRQVVTLLSSLGVPNEVFSKLQDSMVHNLD 1079
            L LR SMNKF+S+H I+E+ +WTRFQPGFLNRQ++TLLS+L VP+ VF K+Q+ MV  L+
Sbjct: 638  LSLRSSMNKFQSNHTILEICSWTRFQPGFLNRQIITLLSALNVPDAVFWKMQELMVSKLN 697

Query: 1080 QMLTNPDIALDVIISSCGDEGNTAALMISGGFKPQIEPHLKEVISCIRASQLGDLLDKAR 1259
            QML + D+A DV+ +SC ++GN AA+M+S GFKPQ EPHL+ +++C+RA+QL  L +KAR
Sbjct: 698  QMLVDSDVAFDVLTASCAEQGNVAAIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKAR 757

Query: 1260 IFVSSAQWLMGCLDELGLLEQGQCFVQVSSPSLEDCFVKHGFKLSGPNSNLKVIKGTVVM 1439
            IFV S +WLMGCLDELG+LEQGQCF+QVS+  LE+CFVKHG K S    NL+V+KGTVV+
Sbjct: 758  IFVPSGRWLMGCLDELGVLEQGQCFIQVSNSYLENCFVKHGSKFSETKKNLQVVKGTVVI 817

Query: 1440 AKNPCLHPGDIRVLEAVDIPALHHLVDCLVFPQNGDRPHSNEASGSDLDGDLYFVTWDGN 1619
            AKNPCLHPGDIR+LEAVD P LHHL DCLVFPQ G+RPH+NEASGSDLDGDLYFVTWD N
Sbjct: 818  AKNPCLHPGDIRILEAVDAPGLHHLYDCLVFPQKGERPHANEASGSDLDGDLYFVTWDEN 877

Query: 1620 LIPPSRESWPAMDYSPAEAKTLPRAVTYQDIIEFFSRNMVNENLGVICNAHVVHADQSEY 1799
            LIPPS+ SW  M Y  AEAK L R V +QDI+EFF++NM NENLG ICNAHVV AD SEY
Sbjct: 878  LIPPSKRSWIPMQYDAAEAKQLTRPVNHQDIVEFFAKNMANENLGAICNAHVVRADLSEY 937

Query: 1800 GAMDEKCIQLAELAATAVDSPKTGKFVIMPHLLKPKIYPDFMGKEDFMSYKSKKILGVLY 1979
            GA+DEKC+ LAELAATAVD PKTGK V MP  LKPKIYPDFMGKE+  SYKSKKILG LY
Sbjct: 938  GALDEKCLTLAELAATAVDFPKTGKIVSMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLY 997

Query: 1980 RKIKNAY-EEEVLSSLDSPYDPEGIPYDADIEIACSNDLIQEAWIHKCSYDGKLNALLGQ 2156
            R+IK+AY +++V +S +  +    IPYD D+E+  + D I +AW  KCSYDG+LN LL Q
Sbjct: 998  RQIKDAYDDDDVAASSELNFVRGDIPYDLDLEVLGATDFISDAWDRKCSYDGQLNGLLAQ 1057

Query: 2157 YKVHSEAEVVSGHVWSMPRYNNRKQRELKEKLKNAYNALKKEFKNVFENVNPDLLEAQGD 2336
            YKV  E EVV+GHVWSMP+ ++RKQ +LKE+LK++YN LK+EF+ VFE ++ D  +   D
Sbjct: 1058 YKVKREEEVVTGHVWSMPKGSSRKQGDLKERLKHSYNCLKREFRQVFEKMDLDFGQLDDD 1117

Query: 2337 QKIQMYEQKASAWYQVTYHPQWVKKSLELRRIEEDDDRVPAFLSFAWIPAEYLVRIKIRQ 2516
            +K  +YE+KASAWYQVTYHP W++KSLEL+  + D   +   LSFAWI A+YL RIKIR 
Sbjct: 1118 EKNMLYERKASAWYQVTYHPHWIQKSLELQ--DSDGAGISVMLSFAWIAADYLARIKIRH 1175

Query: 2517 LGIDNLNTCQP 2549
              I N+++ +P
Sbjct: 1176 SRIGNVDSAKP 1186


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score = 1169 bits (3025), Expect = 0.0
 Identities = 568/856 (66%), Positives = 678/856 (79%), Gaps = 7/856 (0%)
 Frame = +3

Query: 3    AVMHKGIINQFQLSDKFFELLRSQSKEVNIKALTHMYCYRRPVFDAYKRLKIVQNWLLKN 182
            AVMHKGI NQ QLSD FF+LLR+Q  +VNI AL H+  Y+ PVFDA+KRLK VQ WLLKN
Sbjct: 338  AVMHKGIFNQHQLSDSFFDLLRNQPLDVNIAALRHICSYKHPVFDAHKRLKAVQQWLLKN 397

Query: 183  PKGIKGSRVLDHNVEVHRLIITPTRAYCLPPEVELSNRVLRKYKESVDRFLRVTFMDEGF 362
            PK  + S+ LD  VE+ RL ITPTRAYCLPPEVELSNRVLR+YK+  D+FLRVTFMDEG 
Sbjct: 398  PKLFRSSKQLDDIVEIRRLAITPTRAYCLPPEVELSNRVLRRYKDIADQFLRVTFMDEGL 457

Query: 363  DQLNINVLSYYVAPIVKDITSNSFPQKTAVFKRVKTILSEGFYLCGRKYSFLAFSSNQLR 542
              +N N L+YY APIV+DITSNSF QKT +FKRVK+IL++GFYLCGRKYSFLAFSSNQLR
Sbjct: 458  QTMNANTLTYYCAPIVRDITSNSFSQKTRIFKRVKSILTDGFYLCGRKYSFLAFSSNQLR 517

Query: 543  DRSAWFFAEDKKINVTDIKKWMGKFKNKNVAKCAARMGQCFSSTYETVKVPSKEVNFDFP 722
            DRSAWFFAED K +V+ I+ WMGKF N+N+AKCAARMGQCFSSTY TV+VPS E   D P
Sbjct: 518  DRSAWFFAEDGKTSVSKIRNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSAEAILDLP 577

Query: 723  DIERNDFVFSDGIGILTPDLAAEVAEKLQL-TETPSAYQIRYAGCKGVIASWPGKDDGIR 899
            DIERN+++FSDGIG++TPDLA EVAEKL+L    P AYQIRYAGCKGV+A WP   DGIR
Sbjct: 578  DIERNNYIFSDGIGMITPDLAKEVAEKLKLEVNPPCAYQIRYAGCKGVVACWPAHIDGIR 637

Query: 900  LYLRPSMNKFESSHNIIEVITWTRFQPGFLNRQVVTLLSSLGVPNEVFSKLQDSMVHNLD 1079
            L LR SMNKF S+H  +E+ +WTRFQPGFLNRQ++TLLS+L VP+E+F K+Q  MV  L+
Sbjct: 638  LSLRVSMNKFHSNHTTLEICSWTRFQPGFLNRQIITLLSTLDVPDEIFWKMQIVMVSKLN 697

Query: 1080 QMLTNPDIALDVIISSCGDEGNTAALMISGGFKPQIEPHLKEVISCIRASQLGDLLDKAR 1259
            QM  + D+A DV+ +SC ++GNTAA+M+S GF P+ EPHL  +++CIRA+QL  L +K R
Sbjct: 698  QMFMDADVAFDVVTASCAEQGNTAAIMLSAGFNPKTEPHLCGMLTCIRAAQLWGLREKTR 757

Query: 1260 IFVSSAQWLMGCLDELGLLEQGQCFVQVSSPSLEDCFVKHGFKLSGPNSNLKVIKGTVVM 1439
            IFV S +WLMGCLDELG+LE GQCF+QVS+PSLE CF KHG + S     L+V+KGTVV+
Sbjct: 758  IFVPSGRWLMGCLDELGVLEHGQCFIQVSNPSLESCFWKHGSRFSESKKKLQVVKGTVVV 817

Query: 1440 AKNPCLHPGDIRVLEAVDIPALHHLVDCLVFPQNGDRPHSNEASGSDLDGDLYFVTWDGN 1619
            AKNPCLHPGDIR+LEAVD P LHHL DCLVFPQ GDRPH+NEASGSDLDGDLYFVTWD N
Sbjct: 818  AKNPCLHPGDIRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDEN 877

Query: 1620 LIPPSRESWPAMDYSPAEAKTLPRAVTYQDIIEFFSRNMVNENLGVICNAHVVHADQSEY 1799
            LIPPS+ SW  M Y  AEAK L R V +QDII+FF++NMVNENLG ICNAHVVHAD SEY
Sbjct: 878  LIPPSKRSWLPMQYDAAEAKQLNRPVNHQDIIDFFAKNMVNENLGAICNAHVVHADLSEY 937

Query: 1800 GAMDEKCIQLAELAATAVDSPKTGKFVIMPHLLKPKIYPDFMGKEDFMSYKSKKILGVLY 1979
            GA+DE CI+LAELAATAVD PKTGK V MP  LKPK+YPDFMGKED+ SY S KILG LY
Sbjct: 938  GALDENCIKLAELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEDYQSYNSNKILGRLY 997

Query: 1980 RKIKNAYEEEVLSSLDSPYDPE------GIPYDADIEIACSNDLIQEAWIHKCSYDGKLN 2141
            R++K+ Y ++     D+    E       IPYD D+E++ S+D I +AW  KCSYDG+L 
Sbjct: 998  RQVKDDYNDDDDDDDDAATSSELNLVRGDIPYDKDLEVSGSSDYILDAWDQKCSYDGQLK 1057

Query: 2142 ALLGQYKVHSEAEVVSGHVWSMPRYNNRKQRELKEKLKNAYNALKKEFKNVFENVNPDLL 2321
             LL QYKV  E EVV+GH+WSMP+ N+RKQ ELKE+LK +Y++LKKEF+ VFE ++ D  
Sbjct: 1058 GLLAQYKVKREEEVVTGHIWSMPKCNSRKQGELKERLKQSYHSLKKEFRQVFEKMDSDFE 1117

Query: 2322 EAQGDQKIQMYEQKASAWYQVTYHPQWVKKSLELRRIEEDDDRVPAFLSFAWIPAEYLVR 2501
            +   D+K  +YEQKASAWYQV YHP+WV KS+EL+  E D     + LSFAWI A+YL R
Sbjct: 1118 QLTEDEKNLLYEQKASAWYQVAYHPKWVNKSMELQ--EPDAAGCASMLSFAWIAADYLAR 1175

Query: 2502 IKIRQLGIDNLNTCQP 2549
            IKIR  G D ++T +P
Sbjct: 1176 IKIRCRGFDGVDTSKP 1191