BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00020780
         (1534 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAK77127.1|AF362731_1 succinate dehydrogenase subunit 3 [Podo...    62   4e-07
emb|CAN76321.1| hypothetical protein VITISV_044445 [Vitis vinifera]    47   3e-06

>gb|AAK77127.1|AF362731_1 succinate dehydrogenase subunit 3 [Podophyllum peltatum]
          Length = 95

 Score = 62.0 bits (149), Expect = 4e-07
 Identities = 41/73 (56%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
 Frame = +3

Query: 156 LASYVLMINFLSLKLSS*IVMQ*NAFFLNHKSSELILLVVEITAFLALSYHLSNGVRHLW 335
           LA+ VL    L LK+        N +     SS+LIL++VEITA LALSYHL NGVRHL 
Sbjct: 21  LATIVLFCYLLYLKMGFICFTYENFYQFLFYSSKLILILVEITA-LALSYHLYNGVRHLL 79

Query: 336 MDFSG--YCSLIR 368
            DFSG  YCSLIR
Sbjct: 80  TDFSGFLYCSLIR 92


>emb|CAN76321.1| hypothetical protein VITISV_044445 [Vitis vinifera]
          Length = 1279

 Score = 46.6 bits (109), Expect(2) = 3e-06
 Identities = 30/65 (46%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
 Frame = +2

Query: 761  AFSIPCKHIDIRFNLTSYDHHFLLEEKVISLLGKIHTSKNPAADMLTKA--IDKLQRCSA 934
            AF    KHI  +++      H+L+E+K++ +L KI  SKNPA DMLTK   I+KL++C+A
Sbjct: 1220 AFHSKSKHIQTKYHFI----HYLVEDKLV-ILEKICGSKNPA-DMLTKGVTIEKLKQCTA 1273

Query: 935  SLGHL 949
            S+G L
Sbjct: 1274 SIGLL 1278



 Score = 32.3 bits (72), Expect(2) = 3e-06
 Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
 Frame = +3

Query: 567  STGYVFTMGSAAVSFKQ--QKI-----SLHHYRRICGSN*GM*RTQSFMKELGNKQANG- 722
            +TG+VFT+G  A+S+    QKI     +   Y     +   M     F+ ELG KQ  G 
Sbjct: 1145 TTGFVFTLGGTAISWASNLQKIVTLSTTEAEYVAATEARKEMIWLHGFLDELGKKQEMGI 1204

Query: 723  KRFTVKGKIHLEKHSAFHA 779
                 +  I L K+SAFH+
Sbjct: 1205 LHSDSQSAIFLAKNSAFHS 1223