BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00020706
         (1593 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634944.1| PREDICTED: pentatricopeptide repeat-containi...   348   3e-93
ref|XP_002525536.1| pentatricopeptide repeat-containing protein,...   284   4e-74
ref|XP_004141361.1| PREDICTED: pentatricopeptide repeat-containi...   283   1e-73
ref|NP_001167893.1| uncharacterized protein LOC100381604 [Zea ma...   280   8e-73
ref|XP_002468625.1| hypothetical protein SORBIDRAFT_01g049260 [S...   273   1e-70

>ref|XP_003634944.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
            mitochondrial-like [Vitis vinifera]
          Length = 582

 Score =  348 bits (892), Expect = 3e-93
 Identities = 176/360 (48%), Positives = 242/360 (67%)
 Frame = -1

Query: 1362 VQETVLLVKKDENGMEFELDRMGLVLNVGLVSDIFKGLNTEGVSGLRFFNWVREKQVSFY 1183
            + E + +++ DE  ME +L+ M L L+V  V++IF+ LN E +S +RFF W+   +    
Sbjct: 206  ISEIIKVIRSDEIDMEVKLNLMNLRLSVASVTEIFRVLNLERLSAMRFFEWISHSRSGLS 265

Query: 1182 RNSDFCSLIIDNIGRMEDYDXXXXXXXXXXXXXXXLTEKAFAFIPVCCSNYDLSRGYVIR 1003
            RN D CSLIIDN GR+ DY+               LT KAF F+PV   +      +V +
Sbjct: 266  RNYDICSLIIDNCGRLGDYETMRCLLKDFNSKRVCLTSKAFGFVPVFTLSKASIMDFVRK 325

Query: 1002 IIEMLNKVGGSCRNSGIFGLIKMLCSLNAFDLGMFVMEETARRTSYYNVLIWAKCRSCSF 823
            +IE+L+ VGG CR SG+FGLI+M     +F++  FVME T R+TSYYN+L+   CR C+F
Sbjct: 326  LIEVLDDVGGVCRRSGLFGLIEMFSVSGSFEMAKFVMEITERKTSYYNILVREMCRKCNF 385

Query: 822  QDAYVLFDEMRRFGCDPNANSYNYLLGTLCKNSRTVESFKLFGKMEEFGYVPDEVTFEVI 643
            ++A  L DEMR FGC PNA +YNYLL +LCKN+R  E+  +  +M+E G  PD +TFE+ 
Sbjct: 386  KEARDLLDEMRLFGCRPNAKTYNYLLSSLCKNNRDDEACNVLEEMQEAGCPPDALTFEIF 445

Query: 642  ICHACRLGRLDFAVEFLNQMMSRGIEPRHTTHAAFIKGYFYGNRFVEAYKYVVDMCDKYK 463
            I +  RLG+LDFA++FL+QM+SRG+EPR TTHAAFIKGYF+  R+ EAY+YVVD    YK
Sbjct: 446  IYYTYRLGKLDFAIKFLDQMVSRGLEPRLTTHAAFIKGYFHSRRYEEAYEYVVDSGVTYK 505

Query: 462  SSGNVNYSLLASLLHKSRRVVEAREILVDMMEKGLKPNFPVYIKVLKDLHKSGLGYLVAD 283
               N+ YSLLASL  ++  ++ A++IL++M+EKGLKPNF VY +VL+ L KSG   L  D
Sbjct: 506  WPSNMIYSLLASLHQRNGNLISAQKILIEMIEKGLKPNFSVYKRVLEHLDKSGREDLAGD 565


>ref|XP_002525536.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223535215|gb|EEF36894.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 430

 Score =  284 bits (727), Expect = 4e-74
 Identities = 145/347 (41%), Positives = 225/347 (64%)
 Frame = -1

Query: 1344 LVKKDENGMEFELDRMGLVLNVGLVSDIFKGLNTEGVSGLRFFNWVREKQVSFYRNSDFC 1165
            L+  ++N +E +L+ +G+ L++G V  +F+ LN E  S L+FF+W+R  Q     NSD C
Sbjct: 67   LLITEDNELETKLNSLGVRLSIGSVRWVFQVLNREKKSALQFFHWIRRWQPELEGNSDIC 126

Query: 1164 SLIIDNIGRMEDYDXXXXXXXXXXXXXXXLTEKAFAFIPVCCSNYDLSRGYVIRIIEMLN 985
            SL+IDN G ++DY                LT+KAF ++ +  S  +L +     ++++L 
Sbjct: 127  SLVIDNCGHLDDYKAMRCLLDGFSLQRLFLTKKAFEYLQLTSSKEELLKKATQNVVDILQ 186

Query: 984  KVGGSCRNSGIFGLIKMLCSLNAFDLGMFVMEETARRTSYYNVLIWAKCRSCSFQDAYVL 805
            ++GG+   +G+  LI+M   L +FD+  FV+E+T R+ SYYNVLI   CR   F+ A  L
Sbjct: 187  EIGGTSYGTGVPSLIEMFSDLGSFDMAKFVIEKTGRKLSYYNVLIRELCRRGDFKAARDL 246

Query: 804  FDEMRRFGCDPNANSYNYLLGTLCKNSRTVESFKLFGKMEEFGYVPDEVTFEVIICHACR 625
             DE+ + GC+P+A++YNY++ +L KN +  ++ ++F +M++    PD +TFE+ I ++C 
Sbjct: 247  MDEIGKEGCNPSAHTYNYIISSLLKNGKNADACEVFQEMQDNDCPPDALTFEIFIYNSCN 306

Query: 624  LGRLDFAVEFLNQMMSRGIEPRHTTHAAFIKGYFYGNRFVEAYKYVVDMCDKYKSSGNVN 445
             G+LD A EF + M++RG+EPR  THAAFIKG+F   ++ +AYKYVV   DKY  S NVN
Sbjct: 307  EGKLDNAFEFFDDMVARGLEPRLLTHAAFIKGFFNSQQYEKAYKYVVGSDDKY--SSNVN 364

Query: 444  YSLLASLLHKSRRVVEAREILVDMMEKGLKPNFPVYIKVLKDLHKSG 304
            YSLLA+L  K   +V+A  IL +M++KGL+P+F V++KV K L KSG
Sbjct: 365  YSLLANLHQKQGNLVDAENILSEMIKKGLRPHFNVFMKVKKHLMKSG 411


>ref|XP_004141361.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
            mitochondrial-like [Cucumis sativus]
            gi|449498723|ref|XP_004160616.1| PREDICTED:
            pentatricopeptide repeat-containing protein At1g05670,
            mitochondrial-like [Cucumis sativus]
          Length = 494

 Score =  283 bits (723), Expect = 1e-73
 Identities = 145/362 (40%), Positives = 222/362 (61%)
 Frame = -1

Query: 1368 NSVQETVLLVKKDENGMEFELDRMGLVLNVGLVSDIFKGLNTEGVSGLRFFNWVREKQVS 1189
            N +   + ++++++  +E +LD   + L   LV  I + LN   +S  RFFNWV  +   
Sbjct: 117  NQLSNIINIIRENQEDLESKLDSPNVRLTNVLVGQILEMLNKHKISASRFFNWVSVQSCK 176

Query: 1188 FYRNSDFCSLIIDNIGRMEDYDXXXXXXXXXXXXXXXLTEKAFAFIPVCCSNYDLSRGYV 1009
            F  NSD  SL+IDN GR++DY+               L  KAF F+ +  SN    +  V
Sbjct: 177  FPCNSDVYSLLIDNFGRLDDYEGILPVLIEFGLKGIELNHKAFGFL-LPLSNEHSMKLSV 235

Query: 1008 IRIIEMLNKVGGSCRNSGIFGLIKMLCSLNAFDLGMFVMEETARRTSYYNVLIWAKCRSC 829
            ++++++LN+ GG+CR SGI  LI+M CSL +F +  FV+E T +R+S+Y +++  KC+  
Sbjct: 236  VKLVKLLNEAGGTCRLSGIMALIEMFCSLGSFGMAKFVIEITEKRSSFYYIIVREKCKQK 295

Query: 828  SFQDAYVLFDEMRRFGCDPNANSYNYLLGTLCKNSRTVESFKLFGKMEEFGYVPDEVTFE 649
             F+ A    DEMR+ GC P+A   NYLL +LCKN +  E+  L  +M E    P+ +TFE
Sbjct: 296  DFEGARCTLDEMRQVGCIPDAGILNYLLSSLCKNDKFGEAHNLLEEMLEQNCSPNSLTFE 355

Query: 648  VIICHACRLGRLDFAVEFLNQMMSRGIEPRHTTHAAFIKGYFYGNRFVEAYKYVVDMCDK 469
            +IICH C++G ++ A+ +L+ M++ G+ PR +THAAF+K YF   R+ EAY+Y VD   K
Sbjct: 356  IIICHLCKIGNIESALGYLDMMVAGGLMPRLSTHAAFVKSYFSSQRYEEAYQYAVDSSLK 415

Query: 468  YKSSGNVNYSLLASLLHKSRRVVEAREILVDMMEKGLKPNFPVYIKVLKDLHKSGLGYLV 289
            Y ++ N  YSLLA+L  K   +V+A++IL ++M+ GLKP+F VY ++LK L   G G L 
Sbjct: 416  YVTTQNATYSLLATLHEKRGNLVDAQKILSELMDAGLKPHFHVYTRLLKKLQVQGRGDLA 475

Query: 288  AD 283
             D
Sbjct: 476  ND 477


>ref|NP_001167893.1| uncharacterized protein LOC100381604 [Zea mays]
            gi|223944699|gb|ACN26433.1| unknown [Zea mays]
            gi|414864420|tpg|DAA42977.1| TPA: hypothetical protein
            ZEAMMB73_690405 [Zea mays]
          Length = 430

 Score =  280 bits (716), Expect = 8e-73
 Identities = 156/361 (43%), Positives = 214/361 (59%), Gaps = 5/361 (1%)
 Frame = -1

Query: 1350 VLLVKKDENGMEFELDRM-GLVLNVGLVSDIFKGLNTEGVSGLRFFNWVREKQVSFYRNS 1174
            V LV     G+E +LDR+   VL+ GLVS + + L   GV   RFF W       F    
Sbjct: 46   VCLVVAGGGGLEADLDRLFSAVLSHGLVSSVLRALTDRGVPAERFFAWASSLGRGFSPGP 105

Query: 1173 DFCSLIIDNIGRMEDYDXXXXXXXXXXXXXXXLTEKAFAFI-PVCCSNYDLSRGYVIR-I 1000
               +L+++N GR++DY                LT++AFAF+ P   S+   S     R +
Sbjct: 106  RAYNLLVENAGRLDDYGAMSRALALMSERRLSLTDRAFAFLAPSSGSSRSGSVEDAARAV 165

Query: 999  IEMLNKVGGSCRNSGIFGLIKMLCSLNAFDLGMFVMEETARRTSYYNVLIWAKCRSCSFQ 820
            +  L+ VGG CR SG+F L+K L S+  FD  + V+EETAR+  YYNVL+ AKC++  F 
Sbjct: 166  LRALDGVGGPCRASGVFSLVKALASIGEFDAAVLVIEETARKVRYYNVLVAAKCKAGDFV 225

Query: 819  DAYVLFDEMRRFGCDPNANSYNYLLGTLCKNSRTVESFKLFGKMEEF--GYVPDEVTFEV 646
             A  +FDEMRR G DP+AN++NYLLG L K  R  E+  L   ME      +P  +T+E+
Sbjct: 226  GAREVFDEMRRSGSDPDANTWNYLLGCLLKKGRLAEACGLVEAMERLKRSEIPSSLTYEI 285

Query: 645  IICHACRLGRLDFAVEFLNQMMSRGIEPRHTTHAAFIKGYFYGNRFVEAYKYVVDMCDKY 466
            +  HAC+ G++D A++ L+QM S  + PR T H+AFIKGYFY  R  +A KYV DM  + 
Sbjct: 286  LTYHACKAGKMDSAMQILDQMFSENLTPRITIHSAFIKGYFYAGRIEDACKYVSDMSTRD 345

Query: 465  KSSGNVNYSLLASLLHKSRRVVEAREILVDMMEKGLKPNFPVYIKVLKDLHKSGLGYLVA 286
            + S N NYSLLA LL KS R ++A  +L ++MEKGL+P+   Y+KV KDLHK G G L  
Sbjct: 346  RHSVNRNYSLLAKLLWKSGRTIDAGRVLYELMEKGLRPDHSAYVKVAKDLHKMGKGNLAC 405

Query: 285  D 283
            +
Sbjct: 406  E 406


>ref|XP_002468625.1| hypothetical protein SORBIDRAFT_01g049260 [Sorghum bicolor]
            gi|241922479|gb|EER95623.1| hypothetical protein
            SORBIDRAFT_01g049260 [Sorghum bicolor]
          Length = 422

 Score =  273 bits (697), Expect = 1e-70
 Identities = 151/361 (41%), Positives = 209/361 (57%), Gaps = 5/361 (1%)
 Frame = -1

Query: 1350 VLLVKKDENGMEFELDRM-GLVLNVGLVSDIFKGLNTEGVSGLRFFNWVREKQVSFYRNS 1174
            V LV     G+E +LDR+    L+ GLVS   + L   GV   RFF W       F    
Sbjct: 46   VRLVAAGGGGLEADLDRLFAATLSHGLVSSALRALTDSGVPAERFFAWASSLGRGFSPGP 105

Query: 1173 DFCSLIIDNIGRMEDYDXXXXXXXXXXXXXXXLTEKAFAFIPVCC--SNYDLSRGYVIRI 1000
               +L+++N GR+ D                 LT++AFAF+ +    S           +
Sbjct: 106  RAHNLLVENTGRLGDCGAMSRALALMSERMLPLTDRAFAFLALSSGSSRSGSVEDSTTSV 165

Query: 999  IEMLNKVGGSCRNSGIFGLIKMLCSLNAFDLGMFVMEETARRTSYYNVLIWAKCRSCSFQ 820
            +  L+ VGG CR SG+F L+K L S+  FD  + V+EET R+  YYNVL+ AKC++  F 
Sbjct: 166  LRALDGVGGPCRASGVFSLVKALASIGEFDAAVSVIEETTRKVRYYNVLVAAKCKAGDFV 225

Query: 819  DAYVLFDEMRRFGCDPNANSYNYLLGTLCKNSRTVESFKLFGKMEEF--GYVPDEVTFEV 646
             A  +FDEMR+ G DP+AN++NYLLG L KN R  E+  L   ME      +P+ +T+E+
Sbjct: 226  GAREVFDEMRKSGSDPDANTWNYLLGCLLKNGRLAEACGLVEAMERLKCSEIPNSLTYEI 285

Query: 645  IICHACRLGRLDFAVEFLNQMMSRGIEPRHTTHAAFIKGYFYGNRFVEAYKYVVDMCDKY 466
            +  HAC+ G++D A++ LNQM S  + PR T H+AFIKGYFY  R  +A KYV DM  + 
Sbjct: 286  LTYHACKAGKMDSAMQILNQMFSENLTPRITIHSAFIKGYFYAGRIEDACKYVNDMSTRD 345

Query: 465  KSSGNVNYSLLASLLHKSRRVVEAREILVDMMEKGLKPNFPVYIKVLKDLHKSGLGYLVA 286
            + S N NYSLLA LL KS R V+A  +L ++M+KGL+P+   Y+KV KDLHK G G L +
Sbjct: 346  RHSVNRNYSLLAKLLRKSGRTVDAGRVLYELMDKGLRPDHSAYVKVAKDLHKMGRGDLAS 405

Query: 285  D 283
            +
Sbjct: 406  E 406