BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00020665
         (1609 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280704.1| PREDICTED: chloroplastic group IIA intron sp...   521   e-145
ref|XP_002329296.1| predicted protein [Populus trichocarpa] gi|2...   445   e-122
ref|XP_003551841.1| PREDICTED: chloroplastic group IIA intron sp...   424   e-116
ref|XP_003573775.1| PREDICTED: chloroplastic group IIA intron sp...   355   1e-95
ref|XP_002444215.1| hypothetical protein SORBIDRAFT_07g015120 [S...   355   2e-95

>ref|XP_002280704.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Vitis vinifera]
          Length = 1184

 Score =  521 bits (1342), Expect = e-145
 Identities = 300/550 (54%), Positives = 362/550 (65%), Gaps = 24/550 (4%)
 Frame = -2

Query: 1578 MSTPLYFSISSF-NTLQKPYNSSK----NFKIL------SFQKP--NTPSTQFINPKFSF 1438
            MS  L+ S+S   N  Q P NS+     + +IL      SF+ P  +  +T   N     
Sbjct: 1    MSPALFLSLSPIPNHSQFPSNSNSLSNSSIRILNPQRIHSFKPPPISATTTATTNHPDHS 60

Query: 1437 LSEQSLLKKNEDVKMPTAPWMKGPLLLPADNVLDLREASNKRSIKKDNDVERSDRSLTDK 1258
            +S Q +   +  +KMPTAPWMKGPLLL  + VLDL +A  K+ +      E+ DRSLT+K
Sbjct: 61   ISSQPVSGTDAAIKMPTAPWMKGPLLLQPNEVLDLSKARPKK-VAGSAGAEKPDRSLTEK 119

Query: 1257 VSGRRGKQVMKKIVQSVTKLERFHSFKXXXXXXXXXQVPLE-EVVCKDGNVKYRGKMPWA 1081
            VSG RG + MKKI+QS+ KL+  H+           +  +  E +  D N +  GKMPW 
Sbjct: 120  VSGGRGAKAMKKIMQSIVKLQETHTSDETQENTEEFEFGVSLEGIGGDENSRIGGKMPWL 179

Query: 1080 KVERFVFRRMKKEKVKTAAXXXXXXXXXXXXXSDAVKMTEWVKVKKAGVTQAVVDEIKMT 901
            K E+ VFRR KKEKV TAA              +AVKM +WVKVKKAGVT++VVD+I M 
Sbjct: 180  KTEKVVFRRTKKEKVVTAAELTLDPMLLERLRGEAVKMRKWVKVKKAGVTESVVDQIHMV 239

Query: 900  WKRNELAMAKFDLPLCRNMDRAREILEIKTRGLVVWSKKDSHVVYRGCDYESKPLQDLHS 721
            WK +ELAM KFD+PLCRNMDRAREILEIKTRGLV+WSKKD+ VVYRG +Y+S        
Sbjct: 240  WKSDELAMVKFDMPLCRNMDRAREILEIKTRGLVIWSKKDTLVVYRGSNYQSTSKHFQKM 299

Query: 720  EHACVXXXXXXXXXXXSLLISEDDITSS----HRADTI----RISGEEDSFLTS--MQRS 571
                V                EDD+T S    H + T     R  GEEDS  T   M+  
Sbjct: 300  RPGLVAGADASNSKLNQSNF-EDDLTISEIKFHESTTGEKMGRKDGEEDSSPTGIFMEEM 358

Query: 570  LDLPSVSGTLFEREADRLLDELGPRYVDWWWPKPLPVDADMLPEVVSGFRTPFRRCPPHV 391
            +D   V+G+L+EREADRLLD LGPR++DWW PKPLPVDAD+LPEV+ GFR PFR  PP  
Sbjct: 359  VDSQPVNGSLYEREADRLLDGLGPRFIDWWRPKPLPVDADLLPEVLPGFRPPFRLSPPQT 418

Query: 390  RPKLTDDELTYLRKLARPLPTHFALGRNKKLQGLAAAIMKLWEKSLIVKIAVKWGIPNTN 211
            R KLTDDELTYLRKLA  LPTHF LGRN+KLQGLAAAI+KLWEKSLIVKIA+KWGIPNT 
Sbjct: 419  RSKLTDDELTYLRKLAYALPTHFVLGRNRKLQGLAAAILKLWEKSLIVKIAIKWGIPNTK 478

Query: 210  SEQMAWELKNLTGGVLILRNKFFIIIYRGKDFLPQATKNLVVDREAELTRCQVQEEGARL 31
            +EQMA ELK LTGGVL+LRNKFFII+YRGKDFLP    NL+V+RE E   CQ++EE ARL
Sbjct: 479  NEQMANELKCLTGGVLLLRNKFFIILYRGKDFLPCRVANLIVEREMEFKGCQIREEDARL 538

Query: 30   KAIESLSVTN 1
            KAIE+  VT+
Sbjct: 539  KAIETSFVTD 548


>ref|XP_002329296.1| predicted protein [Populus trichocarpa] gi|222870750|gb|EEF07881.1|
            predicted protein [Populus trichocarpa]
          Length = 687

 Score =  445 bits (1144), Expect = e-122
 Identities = 240/476 (50%), Positives = 310/476 (65%), Gaps = 13/476 (2%)
 Frame = -2

Query: 1404 DVKMPTAPWMKGPLLLPADNVLDLREASNKRSIKKDNDVERSDRSLTDKVSGRRGKQVMK 1225
            +VK+PT PW+KGPL+L    +L+L    NK+ IK D  +E+ D++LT K SG RG + M 
Sbjct: 25   NVKVPTPPWIKGPLILQPHELLNLTNPKNKKPIKNDK-IEKDDKALTAKESGVRGNKAMI 83

Query: 1224 KIVQSVTKLERFHSFKXXXXXXXXXQVPLEEVVCKDGNVKYRGK-MPWAKVERFVFRRMK 1048
            +IV+SV +L+R  + K              + + ++G + +R K +PW + ER    RMK
Sbjct: 84   QIVKSVERLQRDENLKDT------------QEISENGVLGFREKKLPWVREERVGNWRMK 131

Query: 1047 KEKVKTAAXXXXXXXXXXXXXSDAVKMTEWVKVKKAGVTQAVVDEIKMTWKRNELAMAKF 868
            KEKV + A              +A KM  WVKVKKAGVTQ+VVDEI++TW+ +ELAM KF
Sbjct: 132  KEKVVSKAELSLDKELLERLRGEAAKMRTWVKVKKAGVTQSVVDEIRLTWRTSELAMIKF 191

Query: 867  DLPLCRNMDRAREILEIKTRGLVVWSKKDSHVVYRGCDYESKPLQDLHSEHACVXXXXXX 688
             +PLCRNM+RAR+I+E  T GLVVW++KD HVVYRGC+Y+ K                  
Sbjct: 192  YMPLCRNMNRARDIVE--TGGLVVWTRKDIHVVYRGCNYQWK------------------ 231

Query: 687  XXXXXSLLISEDDITSSHRADTIRISGEEDSFLTSMQRSLDLPSVSGTLFEREADRLLDE 508
                                        ++    +++ +L+   ++G+LFERE DRLLD 
Sbjct: 232  ----------------------------KNFNTATIEENLNTQPINGSLFERETDRLLDG 263

Query: 507  LGPRYVDWWWPKPLPVDADMLPEVVSGFRTPFRRCPPHVRPKLTDDELTYLRKLARPLPT 328
            LGPR+VDWW  KPLPVDAD+LPEVV GFR+P R CPP +R KL DDELTYLRKLA+ LPT
Sbjct: 264  LGPRFVDWWMRKPLPVDADLLPEVVKGFRSPSRLCPPRMRSKLKDDELTYLRKLAQSLPT 323

Query: 327  HFALGRNKKLQGLAAAIMKLWEKSLIVKIAVKWGIPNTNSEQMAWELK------------ 184
            HF LGRN++LQGLAAAI+KLWEK++I KIAVKWG+PNTN+EQMA ELK            
Sbjct: 324  HFVLGRNRRLQGLAAAILKLWEKTIIAKIAVKWGVPNTNNEQMADELKAKIFLMLMLYTQ 383

Query: 183  NLTGGVLILRNKFFIIIYRGKDFLPQATKNLVVDREAELTRCQVQEEGARLKAIES 16
            +LTGGVL+LRNKFFII+YRGKDFLP    N++VDRE  L +CQ  EEGAR+KAIE+
Sbjct: 384  SLTGGVLLLRNKFFIILYRGKDFLPGQVANVIVDREIALRKCQTNEEGARMKAIET 439


>ref|XP_003551841.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Glycine max]
          Length = 712

 Score =  424 bits (1089), Expect = e-116
 Identities = 241/506 (47%), Positives = 312/506 (61%), Gaps = 2/506 (0%)
 Frame = -2

Query: 1521 NSSKNFKILSFQKPNTPSTQFINPKFSFLSEQSLLKKNEDVKMPTAPWMKGPLLLPADNV 1342
            NS   F I S   PN+ +           + Q        +K PT PWMK PLLL    +
Sbjct: 13   NSYSRFHISSSLPPNSNNGH---------NHQHTSPSQVPIKSPTPPWMKVPLLLQPHEL 63

Query: 1341 LDLREASNKRSIKKDNDVERSDRSLTDKVSGRRGKQVMKKIVQSVTKLERFHSFKXXXXX 1162
            +DL    +K+   K    E SD++L  K    RGK+ MKKIV  V KL +  +       
Sbjct: 64   VDLSNPKSKKF--KPEKHELSDKALMGKEV--RGKRAMKKIVDRVEKLHKTQNSNETRVD 119

Query: 1161 XXXXQV--PLEEVVCKDGNVKYRGKMPWAKVERFVFRRMKKEKVKTAAXXXXXXXXXXXX 988
                +      E++ ++  V+ +G+MPW K E+F F ++K+EK  TAA            
Sbjct: 120  SLNVENFGGYLEILKENEEVRSKGRMPWEKDEKFGFVKVKREKAVTAAELTLDKALLRRL 179

Query: 987  XSDAVKMTEWVKVKKAGVTQAVVDEIKMTWKRNELAMAKFDLPLCRNMDRAREILEIKTR 808
             ++A +M  W+KVKKAGVTQ VVD+IK TW+RNELAM KFD+PLCRNMDRAREI+E KT 
Sbjct: 180  RNEAARMRTWIKVKKAGVTQDVVDQIKRTWRRNELAMIKFDIPLCRNMDRAREIVETKTG 239

Query: 807  GLVVWSKKDSHVVYRGCDYESKPLQDLHSEHACVXXXXXXXXXXXSLLISEDDITSSHRA 628
            GLVV SKKD  VVYRGC++ S  + + +++H                             
Sbjct: 240  GLVVLSKKDFLVVYRGCNHHSSEMLNWNADH----------------------------- 270

Query: 627  DTIRISGEEDSFLTSMQRSLDLPSVSGTLFEREADRLLDELGPRYVDWWWPKPLPVDADM 448
                    +DS  T +Q  ++   V+G+L+ERE +RLLD LGPR++DWW  KPLPVDAD+
Sbjct: 271  --------KDSISTGIQ-DVNCQLVNGSLYERETERLLDGLGPRFIDWWMHKPLPVDADL 321

Query: 447  LPEVVSGFRTPFRRCPPHVRPKLTDDELTYLRKLARPLPTHFALGRNKKLQGLAAAIMKL 268
            LPE V GF+ PFR CPPH   KLTD ELTY RKLA+ LPTHF LGRNK L+GLA+AI+KL
Sbjct: 322  LPEEVPGFQPPFRLCPPHSSAKLTDYELTYFRKLAQSLPTHFVLGRNKGLKGLASAILKL 381

Query: 267  WEKSLIVKIAVKWGIPNTNSEQMAWELKNLTGGVLILRNKFFIIIYRGKDFLPQATKNLV 88
            WEKSLI KIA+K+GIPNT++E MA ELK LTGGVL+LRNKF+I++YRG DFLP++  +LV
Sbjct: 382  WEKSLIAKIAIKYGIPNTDNEMMANELKCLTGGVLLLRNKFYILLYRGNDFLPRSVASLV 441

Query: 87   VDREAELTRCQVQEEGARLKAIESLS 10
              RE EL   Q+ EE AR+KAI++ S
Sbjct: 442  EKRELELKSRQLHEEVARMKAIQAFS 467


>ref|XP_003573775.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Brachypodium distachyon]
          Length = 730

 Score =  355 bits (912), Expect = 1e-95
 Identities = 221/489 (45%), Positives = 272/489 (55%), Gaps = 27/489 (5%)
 Frame = -2

Query: 1392 PTAPWMKGPLLLPADNVLDLREASNKRSIKKDNDVERSDRS----LTDKVSGRRGKQVMK 1225
            P  PW+ GP    +       EA  K     D   +RS+ S    LT  V G R ++ + 
Sbjct: 17   PPPPWLHGPKTPTSATPPLPIEAPPKPH--NDPKPQRSNSSTTNPLTTGVPGGRTRRAVL 74

Query: 1224 KIVQSVTKLERFHSFKXXXXXXXXXQVPL------------EEVVCKD--GNVKYRGKMP 1087
             I++ V  LE  +             +P             EE   KD  G +     +P
Sbjct: 75   GIIRRVRSLELSNPPNPRPRPSTSGNIPFHLPIDRPQEGQEEEEAGKDEKGKLTKSRAVP 134

Query: 1086 WAKVE----RFVFRRMKKEKVKTAAXXXXXXXXXXXXXSDAVKMTEWVKVKKAGVTQAVV 919
            W+       + V RR KK +  T A               A  M  W + KKAGVT  VV
Sbjct: 135  WSAARDEHLKVVLRREKKVREPTRAERELGPALLERLRRAARGMDRWARAKKAGVTDEVV 194

Query: 918  DEIKMTWKRN-ELAMAKFDLPLCRNMDRAREILEIKTRGLVVWSKKDSHVVYRGCDYESK 742
            ++++  W    ELA  +   PL R MDRAREILEIKT GLVVW+K D H VYRG DY   
Sbjct: 195  EDVRSEWSSGQELAGVRIVEPLRRCMDRAREILEIKTGGLVVWTKGDIHFVYRGSDY--- 251

Query: 741  PLQDLHSEHACVXXXXXXXXXXXSLLISEDDITSSHRADTIRISGEEDSFLTSMQRSLDL 562
             + ++   H  V               S  ++   H         E+DS       S+D+
Sbjct: 252  -VHNMKYSHNFVADIQKVRTPQEKYK-SNVELLGKHNGKAKGAFREKDS-------SIDI 302

Query: 561  PS----VSGTLFEREADRLLDELGPRYVDWWWPKPLPVDADMLPEVVSGFRTPFRRCPPH 394
             +    V GTL+ERE +RLLD LGPR++DWWW  PLPVDAD+LPEVV GF+TPFR+CPP 
Sbjct: 303  QTYEEPVKGTLYEREVNRLLDSLGPRFIDWWWNTPLPVDADLLPEVVLGFKTPFRQCPPG 362

Query: 393  VRPKLTDDELTYLRKLARPLPTHFALGRNKKLQGLAAAIMKLWEKSLIVKIAVKWGIPNT 214
            VRP L D+ELTYLRKLARPLP HFALGRN KLQGLAAAI+KLWEKSL+ KIAVK GI NT
Sbjct: 363  VRPTLADEELTYLRKLARPLPAHFALGRNTKLQGLAAAILKLWEKSLVAKIAVKVGIENT 422

Query: 213  NSEQMAWELKNLTGGVLILRNKFFIIIYRGKDFLPQATKNLVVDREAELTRCQVQEEGAR 34
            N+EQMAW LK+LTGG +ILRNK FII+YRGKDFLP   K  V+  EA++   QV+EE AR
Sbjct: 423  NNEQMAWNLKHLTGGTIILRNKDFIILYRGKDFLPAGVKQSVIQHEAQVDAQQVKEEEAR 482

Query: 33   LKAIESLSV 7
            L   ESL +
Sbjct: 483  LSGTESLQM 491


>ref|XP_002444215.1| hypothetical protein SORBIDRAFT_07g015120 [Sorghum bicolor]
            gi|241940565|gb|EES13710.1| hypothetical protein
            SORBIDRAFT_07g015120 [Sorghum bicolor]
          Length = 728

 Score =  355 bits (910), Expect = 2e-95
 Identities = 218/499 (43%), Positives = 276/499 (55%), Gaps = 37/499 (7%)
 Frame = -2

Query: 1392 PTAPWMKGPLLL-----------PADNVLDLREASNKRSIKKDNDVERSDRSLTDKVSGR 1246
            P  PW+ G               PAD         + +S     + + + + LT  V G 
Sbjct: 17   PPPPWLHGSSTQSRDSAPPVPPPPADATPPKPRTHSPKSAPAKKNTKTTAKPLTAGVPGG 76

Query: 1245 RGKQVMKKIVQSVTKLE--------RFHSFKXXXXXXXXXQV-------PLEEVVCKDGN 1111
            R  + +  I++ V  LE          H             +       P +EVV K   
Sbjct: 77   RTHRAVLGIIRRVRSLELSDAPSASSVHDSNAGAAAAFHLPIEPSPPREPGQEVVEK--- 133

Query: 1110 VKYRGKMPWAKVE----RFVFRRMKKEKVKTAAXXXXXXXXXXXXXSDAVKMTEWVKVKK 943
             K R  +PWA       +   RR KK +  T A               A  M  W + KK
Sbjct: 134  AKPRA-VPWAAARDEGLKVALRREKKPRKPTRAETELETDELDRLRRLARGMGRWARAKK 192

Query: 942  AGVTQAVVDEIKMTWKRNE-LAMAKFDLPLCRNMDRAREILEIKTRGLVVWSKKDSHVVY 766
            AGVT  VV+E++  W   E LA  +   PL R+MDRAREILEIKT GLVVW+K D H VY
Sbjct: 193  AGVTDEVVEEMRREWASGEELAAVRIVEPLRRSMDRAREILEIKTGGLVVWTKGDIHFVY 252

Query: 765  RGCDYESKPLQDLHSEHACVXXXXXXXXXXXSLLISEDDITSSHRADTIR--ISGEEDSF 592
            +G  Y+       +++H                  S   +T+ H+   ++  + GE D  
Sbjct: 253  KGSKYQQ------NAKH------------------SHTFVTNVHKGSLVKQNVRGEADDA 288

Query: 591  LTSMQRSL----DLPSVSGTLFEREADRLLDELGPRYVDWWWPKPLPVDADMLPEVVSGF 424
                 +S+    D   V GTL+ERE +RLLD LGPR+VDWWW  PLPVDAD+LPE + GF
Sbjct: 289  FQENDQSICGQKDEEPVKGTLYEREVNRLLDTLGPRFVDWWWDTPLPVDADLLPEFIPGF 348

Query: 423  RTPFRRCPPHVRPKLTDDELTYLRKLARPLPTHFALGRNKKLQGLAAAIMKLWEKSLIVK 244
            +TPFR+CPP VRP L D+ELTYLRKLARPLPTHFALGRN +LQGLAAAI+KLWEKSLI K
Sbjct: 349  KTPFRQCPPGVRPTLADEELTYLRKLARPLPTHFALGRNTRLQGLAAAILKLWEKSLIAK 408

Query: 243  IAVKWGIPNTNSEQMAWELKNLTGGVLILRNKFFIIIYRGKDFLPQATKNLVVDREAELT 64
            IAVK GI NTN+EQMAW LK+LTGG +ILRNK F+I+YRGKDFLP      V+ REA++ 
Sbjct: 409  IAVKVGIQNTNNEQMAWNLKHLTGGTVILRNKDFVILYRGKDFLPGGVAQTVIQREAQVD 468

Query: 63   RCQVQEEGARLKAIESLSV 7
              QV+EE ARLKA++SL +
Sbjct: 469  DEQVKEEEARLKAVDSLQM 487