BLASTX nr result
ID: Coptis25_contig00020664
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00020664 (209 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_004144287.1| PREDICTED: pentatricopeptide repeat-containi... 127 1e-27 ref|XP_002865541.1| pentatricopeptide repeat-containing protein ... 125 5e-27 ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containi... 122 2e-26 ref|NP_199046.1| pentatricopeptide repeat-containing protein [Ar... 122 2e-26 dbj|BAB10204.1| maize crp1 protein-like [Arabidopsis thaliana] 122 2e-26 >ref|XP_004144287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial-like [Cucumis sativus] gi|449489420|ref|XP_004158306.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial-like [Cucumis sativus] Length = 720 Score = 127 bits (318), Expect = 1e-27 Identities = 59/69 (85%), Positives = 69/69 (100%) Frame = -2 Query: 208 HALGRNDKLYEAFLLSQKRSLTPLTYNALIGACARNNDLEKALNLMNRMRRDGFQSDYVN 29 HALGR++KLYEAF+LSQK++LTPLTYNALIGACARNNDLEKALNLM+RMR+DGFQSD++N Sbjct: 187 HALGRSEKLYEAFILSQKQTLTPLTYNALIGACARNNDLEKALNLMSRMRQDGFQSDFIN 246 Query: 28 YSLVIQSLT 2 YSL+IQSLT Sbjct: 247 YSLIIQSLT 255 >ref|XP_002865541.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297311376|gb|EFH41800.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 711 Score = 125 bits (313), Expect = 5e-27 Identities = 59/69 (85%), Positives = 69/69 (100%) Frame = -2 Query: 208 HALGRNDKLYEAFLLSQKRSLTPLTYNALIGACARNNDLEKALNLMNRMRRDGFQSDYVN 29 HALGR++KLYEAFLLSQK++LTPLTYNALIGACARNND+EKALNL++RMR+DG+QSD+VN Sbjct: 177 HALGRSEKLYEAFLLSQKQTLTPLTYNALIGACARNNDIEKALNLISRMRQDGYQSDFVN 236 Query: 28 YSLVIQSLT 2 YSLVIQSLT Sbjct: 237 YSLVIQSLT 245 >ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Vitis vinifera] gi|297745544|emb|CBI40709.3| unnamed protein product [Vitis vinifera] Length = 695 Score = 122 bits (307), Expect = 2e-26 Identities = 58/69 (84%), Positives = 67/69 (97%) Frame = -2 Query: 208 HALGRNDKLYEAFLLSQKRSLTPLTYNALIGACARNNDLEKALNLMNRMRRDGFQSDYVN 29 HALGR++KLYEAFLLSQ+++LTPLTYNALIGACARN+DLEKALNLM+RMRRDGF SD+VN Sbjct: 162 HALGRSEKLYEAFLLSQRQTLTPLTYNALIGACARNDDLEKALNLMSRMRRDGFPSDFVN 221 Query: 28 YSLVIQSLT 2 YS +IQSLT Sbjct: 222 YSFIIQSLT 230 >ref|NP_199046.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75154282|sp|Q8L844.1|PP413_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g42310, mitochondrial; Flags: Precursor gi|21539517|gb|AAM53311.1| maize crp1 protein-like [Arabidopsis thaliana] gi|332007411|gb|AED94794.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 709 Score = 122 bits (307), Expect = 2e-26 Identities = 58/69 (84%), Positives = 68/69 (98%) Frame = -2 Query: 208 HALGRNDKLYEAFLLSQKRSLTPLTYNALIGACARNNDLEKALNLMNRMRRDGFQSDYVN 29 HALGR++KLYEAFLLSQK++LTPLTYNALIGACARNND+EKALNL+ +MR+DG+QSD+VN Sbjct: 175 HALGRSEKLYEAFLLSQKQTLTPLTYNALIGACARNNDIEKALNLIAKMRQDGYQSDFVN 234 Query: 28 YSLVIQSLT 2 YSLVIQSLT Sbjct: 235 YSLVIQSLT 243 >dbj|BAB10204.1| maize crp1 protein-like [Arabidopsis thaliana] Length = 680 Score = 122 bits (307), Expect = 2e-26 Identities = 58/69 (84%), Positives = 68/69 (98%) Frame = -2 Query: 208 HALGRNDKLYEAFLLSQKRSLTPLTYNALIGACARNNDLEKALNLMNRMRRDGFQSDYVN 29 HALGR++KLYEAFLLSQK++LTPLTYNALIGACARNND+EKALNL+ +MR+DG+QSD+VN Sbjct: 146 HALGRSEKLYEAFLLSQKQTLTPLTYNALIGACARNNDIEKALNLIAKMRQDGYQSDFVN 205 Query: 28 YSLVIQSLT 2 YSLVIQSLT Sbjct: 206 YSLVIQSLT 214