BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00020624
         (2547 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002521673.1| pentatricopeptide repeat-containing protein,...   305   5e-80
ref|XP_002265066.1| PREDICTED: uncharacterized protein LOC100260...   296   2e-77
ref|XP_002298921.1| predicted protein [Populus trichocarpa] gi|2...   294   9e-77
ref|XP_002303945.1| predicted protein [Populus trichocarpa] gi|2...   293   1e-76
emb|CAN60667.1| hypothetical protein VITISV_028261 [Vitis vinifera]   293   2e-76

>ref|XP_002521673.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539064|gb|EEF40660.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 341

 Score =  305 bits (780), Expect = 5e-80
 Identities = 151/242 (62%), Positives = 189/242 (78%)
 Frame = +3

Query: 6   IRTFNCVLNILVSAKQFDIIHQVYLGAPRLGLEIDTCCLNILIKGLCESDRLDAAFALLD 185
           ++TFN VLN+LVSA+ FD++H++Y  AP LG+EID CCLNILIKGLCE+  L+AAF +LD
Sbjct: 103 VKTFNLVLNLLVSARIFDVVHEIYEKAPILGVEIDACCLNILIKGLCENGDLEAAFYVLD 162

Query: 186 EFPKLHCEPNVRTYSTLMNFLCKHSRVDEAFELCERMEQAGVDPDTITFNTLISGLCKQG 365
           EFPK  C+PNVRT+STLM++LC    V++AF L +RME  G++ DTITFN LISGL K+G
Sbjct: 163 EFPKQRCKPNVRTFSTLMHYLCAKGEVNQAFGLLDRMENEGIEVDTITFNILISGLRKRG 222

Query: 366 RVAEGVELLDKMRLKGCEPNPGSYQAVLYGLLDSKKFLEAKCLMDKMISMGVLPSFSSYK 545
           R+ EG+ELL KM+LKGCEPN GSYQ VLYGLLD+ KF EAK  MD+M+  G  PSF SYK
Sbjct: 223 RIEEGMELLVKMKLKGCEPNAGSYQEVLYGLLDAGKFSEAKDFMDRMVCEGNGPSFVSYK 282

Query: 546 LVIHGLCNENLLGDVDLVLKKMLRQGFVPRMGMWKKILESMFSEQIISTSVSQCQFSELA 725
            +I GLC E L+G+VD VLK+ML+QGFVP+MGMWK I+ SM SE    TS+    FS++ 
Sbjct: 283 KLIDGLCKEKLIGEVDCVLKQMLKQGFVPKMGMWKHIVGSMLSESGDCTSIC---FSQVI 339

Query: 726 KG 731
            G
Sbjct: 340 GG 341



 Score = 79.7 bits (195), Expect = 4e-12
 Identities = 56/221 (25%), Positives = 105/221 (47%), Gaps = 6/221 (2%)
 Frame = +3

Query: 15  FNCVLNILVSAKQFDIIHQVYLGAPRLGLEIDTCCLNILIKGLCE-----SDRLDAAFAL 179
           +  V+N L  AK FD I  +     R+ LE      N     + +     + R+  A   
Sbjct: 33  YTLVINKLAQAKNFDAIEDIM---QRIKLEKSCRLSNGFFYNVIKIYGHLAGRIKVAIDT 89

Query: 180 LDEFPK-LHCEPNVRTYSTLMNFLCKHSRVDEAFELCERMEQAGVDPDTITFNTLISGLC 356
           L + P+  +C P+V+T++ ++N L      D   E+ E+    GV+ D    N LI GLC
Sbjct: 90  LFDMPRGYNCWPDVKTFNLVLNLLVSARIFDVVHEIYEKAPILGVEIDACCLNILIKGLC 149

Query: 357 KQGRVAEGVELLDKMRLKGCEPNPGSYQAVLYGLLDSKKFLEAKCLMDKMISMGVLPSFS 536
           + G +     +LD+   + C+PN  ++  +++ L    +  +A  L+D+M + G+     
Sbjct: 150 ENGDLEAAFYVLDEFPKQRCKPNVRTFSTLMHYLCAKGEVNQAFGLLDRMENEGIEVDTI 209

Query: 537 SYKLVIHGLCNENLLGDVDLVLKKMLRQGFVPRMGMWKKIL 659
           ++ ++I GL     + +   +L KM  +G  P  G ++++L
Sbjct: 210 TFNILISGLRKRGRIEEGMELLVKMKLKGCEPNAGSYQEVL 250


>ref|XP_002265066.1| PREDICTED: uncharacterized protein LOC100260942 [Vitis vinifera]
          Length = 249

 Score =  296 bits (757), Expect = 2e-77
 Identities = 140/233 (60%), Positives = 179/233 (76%)
 Frame = -2

Query: 2378 PPPLPQPCSTSTAATEMPLQSPARPQISLREXXXXXXXXXSGRLXXXXXXXXXXFPIITP 2199
            PPP   P S   A  + P ++P+ P+++L++         S +L          FPII+P
Sbjct: 10   PPPPRSPTSQGPAVLD-PEKTPSHPKVALQQPSHKKASLKSTKLFRHFRSVFRSFPIISP 68

Query: 2198 TCKMPVSLPGGRLNDGHIHGGTRMTGTLYGCRKARINLSIQENPRCLPMLVLELAIPTAK 2019
             CK+PV L   RLND HIHGGTRMTGTL+G RK R++L+IQE+PRC P+ +LE+AIPT+K
Sbjct: 69   ACKIPVLLHNSRLNDVHIHGGTRMTGTLFGHRKGRVSLAIQESPRCFPIFLLEMAIPTSK 128

Query: 2018 LLQEMGSGLVRIALECEKHPAERTKLLEEPLWTMYCNGKKTGYGVKRDPNGDDLNTMQLL 1839
            LLQE+G GLVRIALECEK P E+ KL++EP+W +YCNG+K GY VKR+ N +DLN MQ+L
Sbjct: 129  LLQELGLGLVRIALECEKRPEEKIKLMDEPIWNLYCNGRKMGYAVKREANAEDLNVMQML 188

Query: 1838 HAVSMGAGVLPSDSADMPDGELTYMRAYFERVVGSKDSETFYMMNPDGNSGPE 1680
            HAVSMGAGVLPS++ D+PDGELTYMRA+F+RV+GSKDSET+YMMNPD N+GPE
Sbjct: 189  HAVSMGAGVLPSEAIDLPDGELTYMRAHFQRVIGSKDSETYYMMNPDSNTGPE 241


>ref|XP_002298921.1| predicted protein [Populus trichocarpa] gi|222846179|gb|EEE83726.1|
           predicted protein [Populus trichocarpa]
          Length = 326

 Score =  294 bits (752), Expect = 9e-77
 Identities = 141/211 (66%), Positives = 173/211 (81%)
 Frame = +3

Query: 6   IRTFNCVLNILVSAKQFDIIHQVYLGAPRLGLEIDTCCLNILIKGLCESDRLDAAFALLD 185
           +++FN VLN+LVSAK FD++H+VYL AP LG+EID C LNILIKGLCE+  L+AAF +LD
Sbjct: 116 VKSFNLVLNLLVSAKVFDVVHEVYLQAPMLGIEIDVCSLNILIKGLCENGDLEAAFNVLD 175

Query: 186 EFPKLHCEPNVRTYSTLMNFLCKHSRVDEAFELCERMEQAGVDPDTITFNTLISGLCKQG 365
           EFPK  CEPNVRT+STLM+ LCK  +VDEAF L ERME+ G+D DTITFN LISGL KQG
Sbjct: 176 EFPKQRCEPNVRTFSTLMHGLCKKGKVDEAFGLLERMEKEGIDADTITFNILISGLRKQG 235

Query: 366 RVAEGVELLDKMRLKGCEPNPGSYQAVLYGLLDSKKFLEAKCLMDKMISMGVLPSFSSYK 545
           +V EG+ELL++M +KGCEPN GSYQ +LYGLLD++K++E K  M +MI  GV PSF SYK
Sbjct: 236 KVVEGLELLERMNIKGCEPNAGSYQEILYGLLDAEKYVEGKEFMVRMIGQGVDPSFVSYK 295

Query: 546 LVIHGLCNENLLGDVDLVLKKMLRQGFVPRM 638
            ++HGLC E LL D+D VLK+M RQGFVP+M
Sbjct: 296 KLVHGLCKERLLRDLDWVLKQMARQGFVPKM 326



 Score = 83.6 bits (205), Expect = 2e-13
 Identities = 58/227 (25%), Positives = 111/227 (48%), Gaps = 8/227 (3%)
 Frame = +3

Query: 24  VLNILVSAKQFDIIHQVYLGAPRLGLEIDTCC------LNILIKGLCE-SDRLDAAFALL 182
           V+N L  AK FD I  +        +++D  C       + +IK   + + R+  A   L
Sbjct: 49  VINKLAQAKNFDAIEDIMQK-----IKLDKSCRLSNDFFHNVIKIYGQLAGRIKKAMETL 103

Query: 183 DEFPK-LHCEPNVRTYSTLMNFLCKHSRVDEAFELCERMEQAGVDPDTITFNTLISGLCK 359
            + PK  +C PNV++++ ++N L      D   E+  +    G++ D  + N LI GLC+
Sbjct: 104 FDMPKGYNCWPNVKSFNLVLNLLVSAKVFDVVHEVYLQAPMLGIEIDVCSLNILIKGLCE 163

Query: 360 QGRVAEGVELLDKMRLKGCEPNPGSYQAVLYGLLDSKKFLEAKCLMDKMISMGVLPSFSS 539
            G +     +LD+   + CEPN  ++  +++GL    K  EA  L+++M   G+     +
Sbjct: 164 NGDLEAAFNVLDEFPKQRCEPNVRTFSTLMHGLCKKGKVDEAFGLLERMEKEGIDADTIT 223

Query: 540 YKLVIHGLCNENLLGDVDLVLKKMLRQGFVPRMGMWKKILESMFSEQ 680
           + ++I GL  +  + +   +L++M  +G  P  G +++IL  +   +
Sbjct: 224 FNILISGLRKQGKVVEGLELLERMNIKGCEPNAGSYQEILYGLLDAE 270


>ref|XP_002303945.1| predicted protein [Populus trichocarpa] gi|222841377|gb|EEE78924.1|
            predicted protein [Populus trichocarpa]
          Length = 261

 Score =  293 bits (751), Expect = 1e-76
 Identities = 149/248 (60%), Positives = 182/248 (73%), Gaps = 2/248 (0%)
 Frame = -2

Query: 2417 SLKDIQSFEYMGSPPPLPQPCSTSTAATEMPLQSPARPQISLREXXXXXXXXXSGRLXXX 2238
            SLK +Q+     SP   P P +T +        SP RP ISL++           ++   
Sbjct: 10   SLKPVQTRSQ--SPSTFPSPPTTPSGKVNP--MSPVRPTISLQQPNSKKGSSKHNKIFRR 65

Query: 2237 XXXXXXXFPIITPTCKMPVSLPGGRLNDGHIHGGTRMTGTLYGCRKARINLSIQENPRCL 2058
                   FPII P CK+PVSL G RL+DGH+HGGTRMTGTL+G RKARINL+IQE+P  L
Sbjct: 66   VRAVFRSFPIIAPACKIPVSLHGNRLHDGHVHGGTRMTGTLFGHRKARINLAIQESPGSL 125

Query: 2057 PMLVLELAIPTAKLLQEMGSGLVRIALECEKHPAERTKLLEEPLWTMYCNGKKTGYGVKR 1878
            P+L+LEL IPT KLLQ+MG GLVRIALECEK P E+TK+ +EP+WTM+CNG+K+GY VKR
Sbjct: 126  PVLLLELTIPTGKLLQDMGVGLVRIALECEKKPHEKTKIEDEPIWTMFCNGRKSGYAVKR 185

Query: 1877 DPNGDDLNTMQLLHAVSMGAGVLPS-DSADMP-DGELTYMRAYFERVVGSKDSETFYMMN 1704
            +P  +DLN MQ+LH VSMGAGV+P+ D AD P DGELTYMRA+FERV GSKDSET+YM+N
Sbjct: 186  EPTDEDLNVMQILHVVSMGAGVIPTGDGADQPADGELTYMRAFFERVAGSKDSETYYMLN 245

Query: 1703 PDGNSGPE 1680
            PDGN+GPE
Sbjct: 246  PDGNNGPE 253


>emb|CAN60667.1| hypothetical protein VITISV_028261 [Vitis vinifera]
          Length = 393

 Score =  293 bits (750), Expect = 2e-76
 Identities = 140/234 (59%), Positives = 181/234 (77%)
 Frame = +3

Query: 3   TIRTFNCVLNILVSAKQFDIIHQVYLGAPRLGLEIDTCCLNILIKGLCESDRLDAAFALL 182
           +++TFN VLN+LVSAK+FD++H+VY GAP LG+EID CCLNIL+KGLC S  +DAA  LL
Sbjct: 156 SVKTFNLVLNMLVSAKRFDVVHKVYAGAPELGVEIDACCLNILVKGLCRSGNVDAACELL 215

Query: 183 DEFPKLHCEPNVRTYSTLMNFLCKHSRVDEAFELCERMEQAGVDPDTITFNTLISGLCKQ 362
           DE+PK  C PNVRT+STLM+ LC+  RV+ A  L ERME+ GV PDT+ FN LISGL K+
Sbjct: 216 DEYPKQRCRPNVRTFSTLMHGLCESGRVEGALGLLERMEREGVYPDTVVFNILISGLRKR 275

Query: 363 GRVAEGVELLDKMRLKGCEPNPGSYQAVLYGLLDSKKFLEAKCLMDKMISMGVLPSFSSY 542
           GRV EG+ELL +M+LKGC PN GSYQ VLYG+LD+ +F +AK  M +MI  GV PSF SY
Sbjct: 276 GRVEEGMELLGRMKLKGCYPNAGSYQEVLYGVLDTGRFGKAKEFMCQMIDEGVSPSFVSY 335

Query: 543 KLVIHGLCNENLLGDVDLVLKKMLRQGFVPRMGMWKKILESMFSEQIISTSVSQ 704
           K+VI+GLC ENL+ DV  +LK+M+ QGFVP   MW++IL++MF   +  + + +
Sbjct: 336 KMVIYGLCKENLVADVVWILKQMVEQGFVPERWMWRRILQTMFPRNVSQSEIME 389