BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00020530
         (1713 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268516.1| PREDICTED: pentatricopeptide repeat-containi...   369   1e-99
ref|XP_002456122.1| hypothetical protein SORBIDRAFT_03g030920 [S...   361   4e-97
ref|XP_004135752.1| PREDICTED: pentatricopeptide repeat-containi...   355   3e-95
ref|XP_002533784.1| pentatricopeptide repeat-containing protein,...   354   5e-95
gb|AFW83548.1| hypothetical protein ZEAMMB73_840071 [Zea mays]        353   8e-95

>ref|XP_002268516.1| PREDICTED: pentatricopeptide repeat-containing protein At1g30610,
            chloroplastic-like [Vitis vinifera]
          Length = 846

 Score =  369 bits (948), Expect = 1e-99
 Identities = 186/299 (62%), Positives = 227/299 (75%), Gaps = 3/299 (1%)
 Frame = -2

Query: 896  NDSVNSIRV-ENDSSYVNQINMRANGNVFDAEKLRSRSTNSYIRLDRDNTQTEDTR-KKV 723
            ND  NS  + E   S  +Q + +  G  F A+     S     R + +  Q +    +K+
Sbjct: 170  NDDENSSEIWEGKGSSKSQRDDKLKGRAFKADSSGLGSKGMRKRHEMNGAQVKKVGDEKI 229

Query: 722  SLKSGTLTRVHK-FDKDVDENDMDMERAAFKSFEVFTDVRGRPRVSWMEMEERIQNLAKW 546
             +K G   +  K F +   ++ +++ERAAFK+FE F D+  +  VS MEMEERIQ LAK 
Sbjct: 230  GIKKGNFNKSRKGFLEKGGDDILEIERAAFKNFEAFNDITVKKPVSKMEMEERIQKLAKL 289

Query: 545  LNGTDINMPEWLFSKMIHSARIKFSDHSVLRVIQILGTLGNWRRVLQIIQWLQSRERFKS 366
            LNG DI+MPEW+FSKM+ SA+I+F+DHS+LRVIQILG LGNWRR LQ+++WLQ RERFKS
Sbjct: 290  LNGADIDMPEWMFSKMMRSAKIRFTDHSILRVIQILGKLGNWRRALQVLEWLQLRERFKS 349

Query: 365  YKTRYIYTAALDVLGKAKRPVEALNVFHSMREGFSSYPDLAAYRCIAVTLGQAGHMKELF 186
            +K RYIYTAALDVLGKA+RPVEALNVF++M +  SSYPDL AY CIAVTLGQAGHMKELF
Sbjct: 350  HKLRYIYTAALDVLGKARRPVEALNVFYAMLQQMSSYPDLVAYHCIAVTLGQAGHMKELF 409

Query: 185  DVIDCMRSPPQHKFKTGLIEKWDPRLEPDIIVYNAVLNACAQRKQWEGAFWVLQQIKQQ 9
            DVIDCMRSPP+ KFKTG +EKWDPRLEPDI+VYNAVLNAC +RKQWEGAFWVLQQ+KQQ
Sbjct: 410  DVIDCMRSPPRKKFKTGALEKWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ 468


>ref|XP_002456122.1| hypothetical protein SORBIDRAFT_03g030920 [Sorghum bicolor]
            gi|241928097|gb|EES01242.1| hypothetical protein
            SORBIDRAFT_03g030920 [Sorghum bicolor]
          Length = 937

 Score =  361 bits (926), Expect = 4e-97
 Identities = 214/469 (45%), Positives = 285/469 (60%), Gaps = 28/469 (5%)
 Frame = -2

Query: 1325 TNGVTSRFDVKHLTRKDHRFSGSYRNMNVVKRPGDDEDLHE-------VGLDQKRNRIDL 1167
            ++G +SR       R+ +R SG  RN    +  G   DL +        G   KR    +
Sbjct: 114  SDGRSSRRRFTGDDRRTNRRSGDARNKPFERNQGPRRDLTKDENQKDVTGFVDKRAMGHV 173

Query: 1166 QKKKLISNETRVTTQ---VRNVERAN----EFTRISKEAPERQQ-----SYRYSGSKV-- 1029
            +  +    E     Q   +R   R N    +F+   K    R+      +Y  SG+    
Sbjct: 174  KNSRRGQGEVEDYVQRRMIRGDTRGNGGNGQFSSPVKAKDTRKNLQGRATYTPSGTSTLP 233

Query: 1028 --SESSLNQTLT----DWEEFSQSSSEMKLGEIGSSKVADVNVKDLYRRSNDSVNSIRVE 867
              S SS N  +     D+   S S +    GE  S+   +VN     +R+   V S+   
Sbjct: 234  NSSISSKNAKVQMGKHDYTRTSSSINFKYPGETFSN--TEVNANSNVQRNQQRVESLGRN 291

Query: 866  NDSSYVNQINMRANGNVFDAEKLRSRSTNSYIRLDRDNTQTEDTRKKVSLKSGTLTRVHK 687
                 + +I++ +  +        +++ + +     DN ++++ R  V L  G   ++ K
Sbjct: 292  FVVRRLGEIDIDSKKSTVSKTYRSTQAMSEHDSHSSDNLESDEPRT-VQLHRGANVKMGK 350

Query: 686  F-DKDVDENDMDMERAAFKSFEVFTDVRGRPRVSWMEMEERIQNLAKWLNGTDINMPEWL 510
            F  +D +  D D +RAAFK+FEVFTDVR RPR+  MEMEERIQ LA  LN TD+N PEW 
Sbjct: 351  FIRRDAEATDFD-DRAAFKTFEVFTDVRNRPRILRMEMEERIQKLASRLNATDVNTPEWK 409

Query: 509  FSKMIHSARIKFSDHSVLRVIQILGTLGNWRRVLQIIQWLQSRERFKSYKTRYIYTAALD 330
            FSKMIH A+IKFSDHS+LR++Q+LG  GNW+ VLQ+++WLQSRERFKSYK+RYIYT  LD
Sbjct: 410  FSKMIHDAKIKFSDHSILRIVQMLGRYGNWKCVLQVVEWLQSRERFKSYKSRYIYTTVLD 469

Query: 329  VLGKAKRPVEALNVFHSMREGFSSYPDLAAYRCIAVTLGQAGHMKELFDVIDCMRSPPQH 150
            VLGKAKRP+EALNVF+SM+   SSYPD+AAY CIAVTLGQAG +KELFDVIDCMRSPP+ 
Sbjct: 470  VLGKAKRPLEALNVFYSMQNQLSSYPDMAAYHCIAVTLGQAGLVKELFDVIDCMRSPPRK 529

Query: 149  KFKTGLIEKWDPRLEPDIIVYNAVLNACAQRKQWEGAFWVLQQIKQQGL 3
            KFK   ++ WDPRLEPD+IVYNAVLNAC Q+KQWEGAFWVLQQ+K++ +
Sbjct: 530  KFKLSPLQNWDPRLEPDLIVYNAVLNACVQQKQWEGAFWVLQQLKEKNI 578


>ref|XP_004135752.1| PREDICTED: pentatricopeptide repeat-containing protein At1g30610,
            chloroplastic-like [Cucumis sativus]
          Length = 902

 Score =  355 bits (910), Expect = 3e-95
 Identities = 201/410 (49%), Positives = 276/410 (67%), Gaps = 25/410 (6%)
 Frame = -2

Query: 1157 KLISNETRVTTQVRNVERANEFTRISKE---------APERQQS-YRYSGSKVSESSLNQ 1008
            K+ + + +VT    NV+  N F R+ K+         APE+  S  ++   KV   S ++
Sbjct: 134  KIDNGKNKVTDVQHNVDVKNMFKRVDKKDLFNNTERIAPEKDLSGNKFDRRKVVTRSNDK 193

Query: 1007 TLTDWEEF----SQSSSEMKLGEIGSSKVAD-VNVKDLYRRSNDSVNSIRVENDSSYVNQ 843
                   F    +    E K  E  SS +   V   +  +  +   N++ V+ +SS V+ 
Sbjct: 194  VKGKMTPFGSLVNDKQHEEKRNENWSSYIEPRVTRSNSKKPIHFKANTLEVKKESSRVSD 253

Query: 842  IN-MRANGNVF-----DAEKLRS--RSTNSYIRLDRDNTQTEDTRKKVSLKS--GTLTRV 693
             N M+ +  ++     DA+  +   ++    I+L+R     +   +K + +S  GT T  
Sbjct: 254  GNSMKTSEKIWAWGDDDAKPAKGVLKAGKYGIQLERSYNPGDKVGRKKTEQSYRGTSTSG 313

Query: 692  HKFDKDVDENDMDMERAAFKSFEVFTDVRGRPRVSWMEMEERIQNLAKWLNGTDINMPEW 513
             +F +  ++N +++E AAF +F+ F D+  +PRVS MEMEERIQ L+K LNG DI+MPEW
Sbjct: 314  KRFLEFNEKNSLEVEHAAFNNFDAF-DIMDKPRVSKMEMEERIQMLSKRLNGADIDMPEW 372

Query: 512  LFSKMIHSARIKFSDHSVLRVIQILGTLGNWRRVLQIIQWLQSRERFKSYKTRYIYTAAL 333
            +FS+M+ SA+I++SDHS+LRVIQ+LG LGNWRRVLQII+WLQ RERFKS+K R+IYT AL
Sbjct: 373  MFSQMMRSAKIRYSDHSILRVIQVLGKLGNWRRVLQIIEWLQMRERFKSHKLRFIYTTAL 432

Query: 332  DVLGKAKRPVEALNVFHSMREGFSSYPDLAAYRCIAVTLGQAGHMKELFDVIDCMRSPPQ 153
            DVLGKA+RPVEALNVFH+M+E FSSYPDL AY  IAVTLGQAG+M+ELFDVID MRSPP+
Sbjct: 433  DVLGKARRPVEALNVFHAMQEHFSSYPDLVAYHSIAVTLGQAGYMRELFDVIDSMRSPPK 492

Query: 152  HKFKTGLIEKWDPRLEPDIIVYNAVLNACAQRKQWEGAFWVLQQIKQQGL 3
             KFKTG++EKWDPRL+PDI++YNAVLNAC +RK  EGAFWVLQ++K+Q L
Sbjct: 493  KKFKTGVLEKWDPRLQPDIVIYNAVLNACVKRKNLEGAFWVLQELKKQSL 542


>ref|XP_002533784.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223526285|gb|EEF28597.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 856

 Score =  354 bits (908), Expect = 5e-95
 Identities = 173/268 (64%), Positives = 213/268 (79%), Gaps = 1/268 (0%)
 Frame = -2

Query: 803  KLRSRSTNSYIRLDRDNTQTEDTRKKVSLKSGTLTRVHKFDKDVD-ENDMDMERAAFKSF 627
            K+  R   +Y+++D++      T K+   K G + R ++   D   E+D ++ERAAFKS 
Sbjct: 226  KMGGRLVRNYVQIDKN------TDKEFMEKKGLIRRTNQAFLDYGHEDDSEVERAAFKSL 279

Query: 626  EVFTDVRGRPRVSWMEMEERIQNLAKWLNGTDINMPEWLFSKMIHSARIKFSDHSVLRVI 447
            E + +  GRP+ S  E+E+R+Q LAK LNG DI+MPEW+FSKM+ SARIK++DHSVLR+I
Sbjct: 280  EEYNNFTGRPQNSKREVEDRLQKLAKCLNGADIDMPEWMFSKMMRSARIKYTDHSVLRII 339

Query: 446  QILGTLGNWRRVLQIIQWLQSRERFKSYKTRYIYTAALDVLGKAKRPVEALNVFHSMREG 267
            QILG LGNWRRVLQ+I+WLQ RERFKS++ R IYT AL+VLGKA+RPVEALNVFH M++ 
Sbjct: 340  QILGKLGNWRRVLQVIEWLQMRERFKSHRLRNIYTTALNVLGKAQRPVEALNVFHVMQQQ 399

Query: 266  FSSYPDLAAYRCIAVTLGQAGHMKELFDVIDCMRSPPQHKFKTGLIEKWDPRLEPDIIVY 87
             SSYPDL AY CIAVTLGQAGHM++LFDVID MRSPP+ KFK   + KWDPRLEPDI+VY
Sbjct: 400  MSSYPDLVAYHCIAVTLGQAGHMEQLFDVIDSMRSPPKKKFKMAAVHKWDPRLEPDIVVY 459

Query: 86   NAVLNACAQRKQWEGAFWVLQQIKQQGL 3
            NAVLNAC QRKQWEGAFWVLQQ+KQQGL
Sbjct: 460  NAVLNACVQRKQWEGAFWVLQQLKQQGL 487


>gb|AFW83548.1| hypothetical protein ZEAMMB73_840071 [Zea mays]
          Length = 956

 Score =  353 bits (906), Expect = 8e-95
 Identities = 170/253 (67%), Positives = 205/253 (81%), Gaps = 1/253 (0%)
 Frame = -2

Query: 758  DNTQTEDTRKKVSLKSGTLTRVHKF-DKDVDENDMDMERAAFKSFEVFTDVRGRPRVSWM 582
            DN ++ D R+ V L  G   ++ KF  +D +  D D +RAAFK+FEVFTDVR RPR+  M
Sbjct: 345  DNLES-DERRTVQLHRGANVKMGKFVSRDAETTDFD-DRAAFKTFEVFTDVRNRPRILRM 402

Query: 581  EMEERIQNLAKWLNGTDINMPEWLFSKMIHSARIKFSDHSVLRVIQILGTLGNWRRVLQI 402
            EMEERIQ LA  LN TD+N PEW FSKMIH A+IKFSDHS+LR++Q+LG  GNW+ VLQ+
Sbjct: 403  EMEERIQKLASRLNATDVNTPEWKFSKMIHDAKIKFSDHSILRIVQMLGRYGNWKCVLQV 462

Query: 401  IQWLQSRERFKSYKTRYIYTAALDVLGKAKRPVEALNVFHSMREGFSSYPDLAAYRCIAV 222
            ++WLQS ERFKSYK+RYIYT  LDVLGKAKRP EALNVF++M+   SSYPD+AAY CIAV
Sbjct: 463  VEWLQSHERFKSYKSRYIYTTVLDVLGKAKRPFEALNVFYTMQNQLSSYPDMAAYHCIAV 522

Query: 221  TLGQAGHMKELFDVIDCMRSPPQHKFKTGLIEKWDPRLEPDIIVYNAVLNACAQRKQWEG 42
            TLGQAG +KELFDVIDCM SPP+ KFK   ++ WDPRLEPD+IVYNAVLNAC Q+KQWEG
Sbjct: 523  TLGQAGLIKELFDVIDCMCSPPRKKFKLSPLQNWDPRLEPDLIVYNAVLNACVQQKQWEG 582

Query: 41   AFWVLQQIKQQGL 3
            AFWVLQQ+K++ +
Sbjct: 583  AFWVLQQLKEKNI 595