BLASTX nr result
ID: Coptis25_contig00020530
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00020530 (1713 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002268516.1| PREDICTED: pentatricopeptide repeat-containi... 369 1e-99 ref|XP_002456122.1| hypothetical protein SORBIDRAFT_03g030920 [S... 361 4e-97 ref|XP_004135752.1| PREDICTED: pentatricopeptide repeat-containi... 355 3e-95 ref|XP_002533784.1| pentatricopeptide repeat-containing protein,... 354 5e-95 gb|AFW83548.1| hypothetical protein ZEAMMB73_840071 [Zea mays] 353 8e-95 >ref|XP_002268516.1| PREDICTED: pentatricopeptide repeat-containing protein At1g30610, chloroplastic-like [Vitis vinifera] Length = 846 Score = 369 bits (948), Expect = 1e-99 Identities = 186/299 (62%), Positives = 227/299 (75%), Gaps = 3/299 (1%) Frame = -2 Query: 896 NDSVNSIRV-ENDSSYVNQINMRANGNVFDAEKLRSRSTNSYIRLDRDNTQTEDTR-KKV 723 ND NS + E S +Q + + G F A+ S R + + Q + +K+ Sbjct: 170 NDDENSSEIWEGKGSSKSQRDDKLKGRAFKADSSGLGSKGMRKRHEMNGAQVKKVGDEKI 229 Query: 722 SLKSGTLTRVHK-FDKDVDENDMDMERAAFKSFEVFTDVRGRPRVSWMEMEERIQNLAKW 546 +K G + K F + ++ +++ERAAFK+FE F D+ + VS MEMEERIQ LAK Sbjct: 230 GIKKGNFNKSRKGFLEKGGDDILEIERAAFKNFEAFNDITVKKPVSKMEMEERIQKLAKL 289 Query: 545 LNGTDINMPEWLFSKMIHSARIKFSDHSVLRVIQILGTLGNWRRVLQIIQWLQSRERFKS 366 LNG DI+MPEW+FSKM+ SA+I+F+DHS+LRVIQILG LGNWRR LQ+++WLQ RERFKS Sbjct: 290 LNGADIDMPEWMFSKMMRSAKIRFTDHSILRVIQILGKLGNWRRALQVLEWLQLRERFKS 349 Query: 365 YKTRYIYTAALDVLGKAKRPVEALNVFHSMREGFSSYPDLAAYRCIAVTLGQAGHMKELF 186 +K RYIYTAALDVLGKA+RPVEALNVF++M + SSYPDL AY CIAVTLGQAGHMKELF Sbjct: 350 HKLRYIYTAALDVLGKARRPVEALNVFYAMLQQMSSYPDLVAYHCIAVTLGQAGHMKELF 409 Query: 185 DVIDCMRSPPQHKFKTGLIEKWDPRLEPDIIVYNAVLNACAQRKQWEGAFWVLQQIKQQ 9 DVIDCMRSPP+ KFKTG +EKWDPRLEPDI+VYNAVLNAC +RKQWEGAFWVLQQ+KQQ Sbjct: 410 DVIDCMRSPPRKKFKTGALEKWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ 468 >ref|XP_002456122.1| hypothetical protein SORBIDRAFT_03g030920 [Sorghum bicolor] gi|241928097|gb|EES01242.1| hypothetical protein SORBIDRAFT_03g030920 [Sorghum bicolor] Length = 937 Score = 361 bits (926), Expect = 4e-97 Identities = 214/469 (45%), Positives = 285/469 (60%), Gaps = 28/469 (5%) Frame = -2 Query: 1325 TNGVTSRFDVKHLTRKDHRFSGSYRNMNVVKRPGDDEDLHE-------VGLDQKRNRIDL 1167 ++G +SR R+ +R SG RN + G DL + G KR + Sbjct: 114 SDGRSSRRRFTGDDRRTNRRSGDARNKPFERNQGPRRDLTKDENQKDVTGFVDKRAMGHV 173 Query: 1166 QKKKLISNETRVTTQ---VRNVERAN----EFTRISKEAPERQQ-----SYRYSGSKV-- 1029 + + E Q +R R N +F+ K R+ +Y SG+ Sbjct: 174 KNSRRGQGEVEDYVQRRMIRGDTRGNGGNGQFSSPVKAKDTRKNLQGRATYTPSGTSTLP 233 Query: 1028 --SESSLNQTLT----DWEEFSQSSSEMKLGEIGSSKVADVNVKDLYRRSNDSVNSIRVE 867 S SS N + D+ S S + GE S+ +VN +R+ V S+ Sbjct: 234 NSSISSKNAKVQMGKHDYTRTSSSINFKYPGETFSN--TEVNANSNVQRNQQRVESLGRN 291 Query: 866 NDSSYVNQINMRANGNVFDAEKLRSRSTNSYIRLDRDNTQTEDTRKKVSLKSGTLTRVHK 687 + +I++ + + +++ + + DN ++++ R V L G ++ K Sbjct: 292 FVVRRLGEIDIDSKKSTVSKTYRSTQAMSEHDSHSSDNLESDEPRT-VQLHRGANVKMGK 350 Query: 686 F-DKDVDENDMDMERAAFKSFEVFTDVRGRPRVSWMEMEERIQNLAKWLNGTDINMPEWL 510 F +D + D D +RAAFK+FEVFTDVR RPR+ MEMEERIQ LA LN TD+N PEW Sbjct: 351 FIRRDAEATDFD-DRAAFKTFEVFTDVRNRPRILRMEMEERIQKLASRLNATDVNTPEWK 409 Query: 509 FSKMIHSARIKFSDHSVLRVIQILGTLGNWRRVLQIIQWLQSRERFKSYKTRYIYTAALD 330 FSKMIH A+IKFSDHS+LR++Q+LG GNW+ VLQ+++WLQSRERFKSYK+RYIYT LD Sbjct: 410 FSKMIHDAKIKFSDHSILRIVQMLGRYGNWKCVLQVVEWLQSRERFKSYKSRYIYTTVLD 469 Query: 329 VLGKAKRPVEALNVFHSMREGFSSYPDLAAYRCIAVTLGQAGHMKELFDVIDCMRSPPQH 150 VLGKAKRP+EALNVF+SM+ SSYPD+AAY CIAVTLGQAG +KELFDVIDCMRSPP+ Sbjct: 470 VLGKAKRPLEALNVFYSMQNQLSSYPDMAAYHCIAVTLGQAGLVKELFDVIDCMRSPPRK 529 Query: 149 KFKTGLIEKWDPRLEPDIIVYNAVLNACAQRKQWEGAFWVLQQIKQQGL 3 KFK ++ WDPRLEPD+IVYNAVLNAC Q+KQWEGAFWVLQQ+K++ + Sbjct: 530 KFKLSPLQNWDPRLEPDLIVYNAVLNACVQQKQWEGAFWVLQQLKEKNI 578 >ref|XP_004135752.1| PREDICTED: pentatricopeptide repeat-containing protein At1g30610, chloroplastic-like [Cucumis sativus] Length = 902 Score = 355 bits (910), Expect = 3e-95 Identities = 201/410 (49%), Positives = 276/410 (67%), Gaps = 25/410 (6%) Frame = -2 Query: 1157 KLISNETRVTTQVRNVERANEFTRISKE---------APERQQS-YRYSGSKVSESSLNQ 1008 K+ + + +VT NV+ N F R+ K+ APE+ S ++ KV S ++ Sbjct: 134 KIDNGKNKVTDVQHNVDVKNMFKRVDKKDLFNNTERIAPEKDLSGNKFDRRKVVTRSNDK 193 Query: 1007 TLTDWEEF----SQSSSEMKLGEIGSSKVAD-VNVKDLYRRSNDSVNSIRVENDSSYVNQ 843 F + E K E SS + V + + + N++ V+ +SS V+ Sbjct: 194 VKGKMTPFGSLVNDKQHEEKRNENWSSYIEPRVTRSNSKKPIHFKANTLEVKKESSRVSD 253 Query: 842 IN-MRANGNVF-----DAEKLRS--RSTNSYIRLDRDNTQTEDTRKKVSLKS--GTLTRV 693 N M+ + ++ DA+ + ++ I+L+R + +K + +S GT T Sbjct: 254 GNSMKTSEKIWAWGDDDAKPAKGVLKAGKYGIQLERSYNPGDKVGRKKTEQSYRGTSTSG 313 Query: 692 HKFDKDVDENDMDMERAAFKSFEVFTDVRGRPRVSWMEMEERIQNLAKWLNGTDINMPEW 513 +F + ++N +++E AAF +F+ F D+ +PRVS MEMEERIQ L+K LNG DI+MPEW Sbjct: 314 KRFLEFNEKNSLEVEHAAFNNFDAF-DIMDKPRVSKMEMEERIQMLSKRLNGADIDMPEW 372 Query: 512 LFSKMIHSARIKFSDHSVLRVIQILGTLGNWRRVLQIIQWLQSRERFKSYKTRYIYTAAL 333 +FS+M+ SA+I++SDHS+LRVIQ+LG LGNWRRVLQII+WLQ RERFKS+K R+IYT AL Sbjct: 373 MFSQMMRSAKIRYSDHSILRVIQVLGKLGNWRRVLQIIEWLQMRERFKSHKLRFIYTTAL 432 Query: 332 DVLGKAKRPVEALNVFHSMREGFSSYPDLAAYRCIAVTLGQAGHMKELFDVIDCMRSPPQ 153 DVLGKA+RPVEALNVFH+M+E FSSYPDL AY IAVTLGQAG+M+ELFDVID MRSPP+ Sbjct: 433 DVLGKARRPVEALNVFHAMQEHFSSYPDLVAYHSIAVTLGQAGYMRELFDVIDSMRSPPK 492 Query: 152 HKFKTGLIEKWDPRLEPDIIVYNAVLNACAQRKQWEGAFWVLQQIKQQGL 3 KFKTG++EKWDPRL+PDI++YNAVLNAC +RK EGAFWVLQ++K+Q L Sbjct: 493 KKFKTGVLEKWDPRLQPDIVIYNAVLNACVKRKNLEGAFWVLQELKKQSL 542 >ref|XP_002533784.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223526285|gb|EEF28597.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 856 Score = 354 bits (908), Expect = 5e-95 Identities = 173/268 (64%), Positives = 213/268 (79%), Gaps = 1/268 (0%) Frame = -2 Query: 803 KLRSRSTNSYIRLDRDNTQTEDTRKKVSLKSGTLTRVHKFDKDVD-ENDMDMERAAFKSF 627 K+ R +Y+++D++ T K+ K G + R ++ D E+D ++ERAAFKS Sbjct: 226 KMGGRLVRNYVQIDKN------TDKEFMEKKGLIRRTNQAFLDYGHEDDSEVERAAFKSL 279 Query: 626 EVFTDVRGRPRVSWMEMEERIQNLAKWLNGTDINMPEWLFSKMIHSARIKFSDHSVLRVI 447 E + + GRP+ S E+E+R+Q LAK LNG DI+MPEW+FSKM+ SARIK++DHSVLR+I Sbjct: 280 EEYNNFTGRPQNSKREVEDRLQKLAKCLNGADIDMPEWMFSKMMRSARIKYTDHSVLRII 339 Query: 446 QILGTLGNWRRVLQIIQWLQSRERFKSYKTRYIYTAALDVLGKAKRPVEALNVFHSMREG 267 QILG LGNWRRVLQ+I+WLQ RERFKS++ R IYT AL+VLGKA+RPVEALNVFH M++ Sbjct: 340 QILGKLGNWRRVLQVIEWLQMRERFKSHRLRNIYTTALNVLGKAQRPVEALNVFHVMQQQ 399 Query: 266 FSSYPDLAAYRCIAVTLGQAGHMKELFDVIDCMRSPPQHKFKTGLIEKWDPRLEPDIIVY 87 SSYPDL AY CIAVTLGQAGHM++LFDVID MRSPP+ KFK + KWDPRLEPDI+VY Sbjct: 400 MSSYPDLVAYHCIAVTLGQAGHMEQLFDVIDSMRSPPKKKFKMAAVHKWDPRLEPDIVVY 459 Query: 86 NAVLNACAQRKQWEGAFWVLQQIKQQGL 3 NAVLNAC QRKQWEGAFWVLQQ+KQQGL Sbjct: 460 NAVLNACVQRKQWEGAFWVLQQLKQQGL 487 >gb|AFW83548.1| hypothetical protein ZEAMMB73_840071 [Zea mays] Length = 956 Score = 353 bits (906), Expect = 8e-95 Identities = 170/253 (67%), Positives = 205/253 (81%), Gaps = 1/253 (0%) Frame = -2 Query: 758 DNTQTEDTRKKVSLKSGTLTRVHKF-DKDVDENDMDMERAAFKSFEVFTDVRGRPRVSWM 582 DN ++ D R+ V L G ++ KF +D + D D +RAAFK+FEVFTDVR RPR+ M Sbjct: 345 DNLES-DERRTVQLHRGANVKMGKFVSRDAETTDFD-DRAAFKTFEVFTDVRNRPRILRM 402 Query: 581 EMEERIQNLAKWLNGTDINMPEWLFSKMIHSARIKFSDHSVLRVIQILGTLGNWRRVLQI 402 EMEERIQ LA LN TD+N PEW FSKMIH A+IKFSDHS+LR++Q+LG GNW+ VLQ+ Sbjct: 403 EMEERIQKLASRLNATDVNTPEWKFSKMIHDAKIKFSDHSILRIVQMLGRYGNWKCVLQV 462 Query: 401 IQWLQSRERFKSYKTRYIYTAALDVLGKAKRPVEALNVFHSMREGFSSYPDLAAYRCIAV 222 ++WLQS ERFKSYK+RYIYT LDVLGKAKRP EALNVF++M+ SSYPD+AAY CIAV Sbjct: 463 VEWLQSHERFKSYKSRYIYTTVLDVLGKAKRPFEALNVFYTMQNQLSSYPDMAAYHCIAV 522 Query: 221 TLGQAGHMKELFDVIDCMRSPPQHKFKTGLIEKWDPRLEPDIIVYNAVLNACAQRKQWEG 42 TLGQAG +KELFDVIDCM SPP+ KFK ++ WDPRLEPD+IVYNAVLNAC Q+KQWEG Sbjct: 523 TLGQAGLIKELFDVIDCMCSPPRKKFKLSPLQNWDPRLEPDLIVYNAVLNACVQQKQWEG 582 Query: 41 AFWVLQQIKQQGL 3 AFWVLQQ+K++ + Sbjct: 583 AFWVLQQLKEKNI 595