BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00020526
         (322 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAO41891.1| putative selenium-binding protein [Arabidopsis th...    87   8e-22
ref|NP_178481.1| pentatricopeptide repeat-containing protein [Ar...    87   8e-22
ref|XP_002514406.1| pentatricopeptide repeat-containing protein,...    90   5e-21
emb|CBI37724.3| unnamed protein product [Vitis vinifera]               88   8e-16
ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containi...    88   8e-16

>gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score = 86.7 bits (213), Expect(2) = 8e-22
 Identities = 39/59 (66%), Positives = 47/59 (79%)
 Frame = +3

Query: 141 HGLKAHPVTYSQLIKCCIARRAIEEGKLIHKHIYSNGHVPKMFINNVLLNMYVKFNLLD 317
           HGL A   TYS+LIKCCI+ RA+ EG LI +H+Y NGH P MF+ NVL+NMYVKFNLL+
Sbjct: 55  HGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLN 113



 Score = 42.0 bits (97), Expect(2) = 8e-22
 Identities = 21/43 (48%), Positives = 30/43 (69%)
 Frame = +1

Query: 13  PNPTLQISINPSSSPTLLLDDFTKFCYQKDLKRAINTMHSMQN 141
           P  TL+ S + S+  TLLL +FT+ CYQ+DL RA+  M S+Q+
Sbjct: 13  PVVTLRCSYS-STDQTLLLSEFTRLCYQRDLPRAMKAMDSLQS 54


>ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
           gi|4582435|gb|AAD24821.1| putative selenium-binding
           protein [Arabidopsis thaliana]
           gi|330250668|gb|AEC05762.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score = 86.7 bits (213), Expect(2) = 8e-22
 Identities = 39/59 (66%), Positives = 47/59 (79%)
 Frame = +3

Query: 141 HGLKAHPVTYSQLIKCCIARRAIEEGKLIHKHIYSNGHVPKMFINNVLLNMYVKFNLLD 317
           HGL A   TYS+LIKCCI+ RA+ EG LI +H+Y NGH P MF+ NVL+NMYVKFNLL+
Sbjct: 55  HGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLN 113



 Score = 42.0 bits (97), Expect(2) = 8e-22
 Identities = 21/43 (48%), Positives = 30/43 (69%)
 Frame = +1

Query: 13  PNPTLQISINPSSSPTLLLDDFTKFCYQKDLKRAINTMHSMQN 141
           P  TL+ S + S+  TLLL +FT+ CYQ+DL RA+  M S+Q+
Sbjct: 13  PVVTLRCSYS-STDQTLLLSEFTRLCYQRDLPRAMKAMDSLQS 54


>ref|XP_002514406.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223546503|gb|EEF48002.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 436

 Score = 89.7 bits (221), Expect(2) = 5e-21
 Identities = 41/65 (63%), Positives = 54/65 (83%)
 Frame = +3

Query: 123 NALHAKHGLKAHPVTYSQLIKCCIARRAIEEGKLIHKHIYSNGHVPKMFINNVLLNMYVK 302
           +A+H KHG+ A   TYS+LIKCC+AR AIE+GK ++KH+ SNG+ P +F+ N+LLNMYVK
Sbjct: 46  DAMH-KHGIWADSFTYSELIKCCLARNAIEQGKQVYKHLSSNGYQPNIFLINMLLNMYVK 104

Query: 303 FNLLD 317
           FNLLD
Sbjct: 105 FNLLD 109



 Score = 36.2 bits (82), Expect(2) = 5e-21
 Identities = 15/30 (50%), Positives = 23/30 (76%)
 Frame = +1

Query: 46  SSSPTLLLDDFTKFCYQKDLKRAINTMHSM 135
           +S+ + LL +FT+FCYQ+DL RA+  M +M
Sbjct: 19  TSNSSSLLREFTEFCYQRDLPRAMKAMDAM 48


>emb|CBI37724.3| unnamed protein product [Vitis vinifera]
          Length = 339

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 40/71 (56%), Positives = 53/71 (74%), Gaps = 5/71 (7%)
 Frame = +3

Query: 120 HNALHA-----KHGLKAHPVTYSQLIKCCIARRAIEEGKLIHKHIYSNGHVPKMFINNVL 284
           H A+ A     +HG+ A  +TYS+LIKCC AR A++EGK +H+HI+  G+ PKMF+ N L
Sbjct: 28  HRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTL 87

Query: 285 LNMYVKFNLLD 317
           LNMYVKFNLL+
Sbjct: 88  LNMYVKFNLLE 98


>ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 40/71 (56%), Positives = 53/71 (74%), Gaps = 5/71 (7%)
 Frame = +3

Query: 120 HNALHA-----KHGLKAHPVTYSQLIKCCIARRAIEEGKLIHKHIYSNGHVPKMFINNVL 284
           H A+ A     +HG+ A  +TYS+LIKCC AR A++EGK +H+HI+  G+ PKMF+ N L
Sbjct: 37  HRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTL 96

Query: 285 LNMYVKFNLLD 317
           LNMYVKFNLL+
Sbjct: 97  LNMYVKFNLLE 107