BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00020524
         (529 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002890881.1| EMB2279 [Arabidopsis lyrata subsp. lyrata] g...    57   2e-06
ref|XP_002337688.1| predicted protein [Populus trichocarpa] gi|2...    57   2e-06
ref|NP_174349.1| pentatricopeptide repeat-containing protein [Ar...    56   3e-06
ref|NP_001185117.1| pentatricopeptide repeat-containing protein ...    56   3e-06

>ref|XP_002890881.1| EMB2279 [Arabidopsis lyrata subsp. lyrata]
           gi|297336723|gb|EFH67140.1| EMB2279 [Arabidopsis lyrata
           subsp. lyrata]
          Length = 913

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 46/136 (33%), Positives = 65/136 (47%), Gaps = 13/136 (9%)
 Frame = +3

Query: 159 MAVTLSTNSSTNPSVLQG----FWRVPLNPVSK------IALSRKNVKENRVFCAVVAN- 305
           MAVT+STN+  N S L      FW+ PL P         + L+ +  K   +FC  +   
Sbjct: 1   MAVTISTNTFVNASFLDESRNFFWK-PLFPQPSYNCRRVVRLNSRKSKTKVMFCLNLNTK 59

Query: 306 --GLADSGKFIEKQFEFKPTFDDYLKAMESVKTGRETKPVGKDVRRVSEAFEEGKERVES 479
             G+  SG   +K FEFKP+FD YL+ MESVKT R+ K            F+  K   + 
Sbjct: 60  EVGMQTSG---DKGFEFKPSFDQYLQIMESVKTARKKK-----------KFDRFKVEDDD 105

Query: 480 GSEGYSHRMGNRKREG 527
           G  G S  + +  ++G
Sbjct: 106 GGVGNSDSVDSEVKDG 121


>ref|XP_002337688.1| predicted protein [Populus trichocarpa] gi|222869559|gb|EEF06690.1|
           predicted protein [Populus trichocarpa]
          Length = 528

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 28/41 (68%), Positives = 31/41 (75%)
 Frame = +3

Query: 303 NGLADSGKFIEKQFEFKPTFDDYLKAMESVKTGRETKPVGK 425
           N L  SG  IEK+FEFKP+F +YLKAMESVKTGRE   V K
Sbjct: 18  NRLVGSGGVIEKEFEFKPSFGEYLKAMESVKTGREKNQVHK 58


>ref|NP_174349.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75200328|sp|Q9SA76.1|PPR64_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g30610, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2279; Flags: Precursor
           gi|4587517|gb|AAD25748.1|AC007060_6 T5I8.6 [Arabidopsis
           thaliana] gi|332193128|gb|AEE31249.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 1006

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 38/95 (40%), Positives = 51/95 (53%), Gaps = 10/95 (10%)
 Frame = +3

Query: 159 MAVTLSTNSSTNPSVLQ----GFWRVPL------NPVSKIALSRKNVKENRVFCAVVANG 308
           MAVT+STN+  N S+L      FWR PL      N    + L+ + +    +FC  +   
Sbjct: 1   MAVTISTNAFVNASLLDESRNSFWR-PLFHQPYYNCRRVVRLNSRKLNSKVMFCLNLNTK 59

Query: 309 LADSGKFIEKQFEFKPTFDDYLKAMESVKTGRETK 413
                K  +K FEFKP+FD YL+ MESVKT R+ K
Sbjct: 60  EVGLQKPGDKGFEFKPSFDQYLQIMESVKTARKKK 94


>ref|NP_001185117.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|332193129|gb|AEE31250.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 978

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 38/95 (40%), Positives = 51/95 (53%), Gaps = 10/95 (10%)
 Frame = +3

Query: 159 MAVTLSTNSSTNPSVLQ----GFWRVPL------NPVSKIALSRKNVKENRVFCAVVANG 308
           MAVT+STN+  N S+L      FWR PL      N    + L+ + +    +FC  +   
Sbjct: 1   MAVTISTNAFVNASLLDESRNSFWR-PLFHQPYYNCRRVVRLNSRKLNSKVMFCLNLNTK 59

Query: 309 LADSGKFIEKQFEFKPTFDDYLKAMESVKTGRETK 413
                K  +K FEFKP+FD YL+ MESVKT R+ K
Sbjct: 60  EVGLQKPGDKGFEFKPSFDQYLQIMESVKTARKKK 94