BLASTX nr result
ID: Coptis25_contig00020524
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00020524 (529 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002890881.1| EMB2279 [Arabidopsis lyrata subsp. lyrata] g... 57 2e-06 ref|XP_002337688.1| predicted protein [Populus trichocarpa] gi|2... 57 2e-06 ref|NP_174349.1| pentatricopeptide repeat-containing protein [Ar... 56 3e-06 ref|NP_001185117.1| pentatricopeptide repeat-containing protein ... 56 3e-06 >ref|XP_002890881.1| EMB2279 [Arabidopsis lyrata subsp. lyrata] gi|297336723|gb|EFH67140.1| EMB2279 [Arabidopsis lyrata subsp. lyrata] Length = 913 Score = 57.0 bits (136), Expect = 2e-06 Identities = 46/136 (33%), Positives = 65/136 (47%), Gaps = 13/136 (9%) Frame = +3 Query: 159 MAVTLSTNSSTNPSVLQG----FWRVPLNPVSK------IALSRKNVKENRVFCAVVAN- 305 MAVT+STN+ N S L FW+ PL P + L+ + K +FC + Sbjct: 1 MAVTISTNTFVNASFLDESRNFFWK-PLFPQPSYNCRRVVRLNSRKSKTKVMFCLNLNTK 59 Query: 306 --GLADSGKFIEKQFEFKPTFDDYLKAMESVKTGRETKPVGKDVRRVSEAFEEGKERVES 479 G+ SG +K FEFKP+FD YL+ MESVKT R+ K F+ K + Sbjct: 60 EVGMQTSG---DKGFEFKPSFDQYLQIMESVKTARKKK-----------KFDRFKVEDDD 105 Query: 480 GSEGYSHRMGNRKREG 527 G G S + + ++G Sbjct: 106 GGVGNSDSVDSEVKDG 121 >ref|XP_002337688.1| predicted protein [Populus trichocarpa] gi|222869559|gb|EEF06690.1| predicted protein [Populus trichocarpa] Length = 528 Score = 57.0 bits (136), Expect = 2e-06 Identities = 28/41 (68%), Positives = 31/41 (75%) Frame = +3 Query: 303 NGLADSGKFIEKQFEFKPTFDDYLKAMESVKTGRETKPVGK 425 N L SG IEK+FEFKP+F +YLKAMESVKTGRE V K Sbjct: 18 NRLVGSGGVIEKEFEFKPSFGEYLKAMESVKTGREKNQVHK 58 >ref|NP_174349.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75200328|sp|Q9SA76.1|PPR64_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g30610, chloroplastic; AltName: Full=Protein EMBRYO DEFECTIVE 2279; Flags: Precursor gi|4587517|gb|AAD25748.1|AC007060_6 T5I8.6 [Arabidopsis thaliana] gi|332193128|gb|AEE31249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 1006 Score = 56.2 bits (134), Expect = 3e-06 Identities = 38/95 (40%), Positives = 51/95 (53%), Gaps = 10/95 (10%) Frame = +3 Query: 159 MAVTLSTNSSTNPSVLQ----GFWRVPL------NPVSKIALSRKNVKENRVFCAVVANG 308 MAVT+STN+ N S+L FWR PL N + L+ + + +FC + Sbjct: 1 MAVTISTNAFVNASLLDESRNSFWR-PLFHQPYYNCRRVVRLNSRKLNSKVMFCLNLNTK 59 Query: 309 LADSGKFIEKQFEFKPTFDDYLKAMESVKTGRETK 413 K +K FEFKP+FD YL+ MESVKT R+ K Sbjct: 60 EVGLQKPGDKGFEFKPSFDQYLQIMESVKTARKKK 94 >ref|NP_001185117.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|332193129|gb|AEE31250.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 978 Score = 56.2 bits (134), Expect = 3e-06 Identities = 38/95 (40%), Positives = 51/95 (53%), Gaps = 10/95 (10%) Frame = +3 Query: 159 MAVTLSTNSSTNPSVLQ----GFWRVPL------NPVSKIALSRKNVKENRVFCAVVANG 308 MAVT+STN+ N S+L FWR PL N + L+ + + +FC + Sbjct: 1 MAVTISTNAFVNASLLDESRNSFWR-PLFHQPYYNCRRVVRLNSRKLNSKVMFCLNLNTK 59 Query: 309 LADSGKFIEKQFEFKPTFDDYLKAMESVKTGRETK 413 K +K FEFKP+FD YL+ MESVKT R+ K Sbjct: 60 EVGLQKPGDKGFEFKPSFDQYLQIMESVKTARKKK 94