BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00020460
         (484 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266772.2| PREDICTED: pentatricopeptide repeat-containi...    67   2e-09
ref|XP_002325338.1| predicted protein [Populus trichocarpa] gi|2...    64   1e-08
ref|XP_002521979.1| pentatricopeptide repeat-containing protein,...    58   9e-07
ref|XP_004142592.1| PREDICTED: pentatricopeptide repeat-containi...    57   1e-06
ref|XP_002892464.1| pentatricopeptide repeat-containing protein ...    57   2e-06

>ref|XP_002266772.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08610-like [Vitis vinifera]
          Length = 498

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 32/58 (55%), Positives = 44/58 (75%)
 Frame = -1

Query: 484 QVDLGIEFLEMMISSSRKPSEAIYATLVKGVAASGMREEAIMLQKKLIERKVLKEESM 311
           +VD+ I+ LEMM+SS  KP+E IY+ ++KGV A+GM EEA  L +KL E KV +EE+M
Sbjct: 439 KVDIAIQVLEMMVSSQCKPNEEIYSAIIKGVGAAGMIEEANQLHQKLTELKVFREETM 496


>ref|XP_002325338.1| predicted protein [Populus trichocarpa] gi|222862213|gb|EEE99719.1|
           predicted protein [Populus trichocarpa]
          Length = 481

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 33/54 (61%), Positives = 41/54 (75%)
 Frame = -1

Query: 484 QVDLGIEFLEMMISSSRKPSEAIYATLVKGVAASGMREEAIMLQKKLIERKVLK 323
           +VD+ I+ LEMMIS   KP E IY+TL+K VA +GM EEA  L +KLIERKVL+
Sbjct: 422 RVDIAIQVLEMMISGRYKPDEEIYSTLIKSVADAGMVEEADELHQKLIERKVLR 475


>ref|XP_002521979.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223538783|gb|EEF40383.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 496

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 29/58 (50%), Positives = 42/58 (72%)
 Frame = -1

Query: 484 QVDLGIEFLEMMISSSRKPSEAIYATLVKGVAASGMREEAIMLQKKLIERKVLKEESM 311
           + D+ I+ LE+MISS  KP E IY+ L+  +A +GM EEA  L++KLI  KVLK++S+
Sbjct: 435 KTDIAIQVLEIMISSRCKPDEEIYSALINSLADAGMMEEANELRQKLINIKVLKDQSI 492


>ref|XP_004142592.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08610-like [Cucumis sativus]
           gi|449516715|ref|XP_004165392.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g08610-like [Cucumis sativus]
          Length = 594

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 27/56 (48%), Positives = 44/56 (78%)
 Frame = -1

Query: 484 QVDLGIEFLEMMISSSRKPSEAIYATLVKGVAASGMREEAIMLQKKLIERKVLKEE 317
           +VDL I+ LEMM+SS  K +E IY+T++  +A++G++E+A  L++KLIE KVL ++
Sbjct: 537 KVDLAIQVLEMMLSSPCKSNETIYSTIINSIASAGLKEQADELRQKLIEWKVLGKQ 592


>ref|XP_002892464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297338306|gb|EFH68723.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 555

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 26/55 (47%), Positives = 39/55 (70%)
 Frame = -1

Query: 484 QVDLGIEFLEMMISSSRKPSEAIYATLVKGVAASGMREEAIMLQKKLIERKVLKE 320
           ++++ IE +E+M++S  KP E IY  +VKGV   GM  EA+ LQKKL + K+L+E
Sbjct: 500 EMEMAIEVVEIMLTSGCKPDETIYTAIVKGVEEMGMGSEAVQLQKKLTQWKLLRE 554