BLASTX nr result
ID: Coptis25_contig00020264
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00020264
(969 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002489257.1| hypothetical protein SORBIDRAFT_0011s003210 ... 62 2e-19
ref|XP_002447531.1| hypothetical protein SORBIDRAFT_06g002845 [S... 50 7e-16
ref|XP_002445372.1| hypothetical protein SORBIDRAFT_07g013775 [S... 70 5e-15
gb|AAP54692.2| retrotransposon protein, putative, unclassified [... 55 7e-15
gb|AAO00713.1| retrotransposon protein, putative, unclassified [... 55 7e-15
>ref|XP_002489257.1| hypothetical protein SORBIDRAFT_0011s003210 [Sorghum bicolor]
gi|241947006|gb|EES20151.1| hypothetical protein
SORBIDRAFT_0011s003210 [Sorghum bicolor]
Length = 821
Score = 61.6 bits (148), Expect(3) = 2e-19
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Frame = -2
Query: 470 EIKVWYFSGIYASPDPVICTTQWEQLHLFKPPSRQPWLCLGDLNEVLKPEEKRGRVPFSP 291
+I W +G Y P W L + S PWLCLGD NEVL EE+ G +
Sbjct: 173 KISHWRLTGFYGEPRWERRRESWYLLRFLRAQSSDPWLCLGDFNEVLAMEEQMG----AN 228
Query: 290 SKAQWLIQA----MNNCELFDIGYKGPVFTW 210
+ W + A +N+C L D+G+ G +TW
Sbjct: 229 EREMWQVTAFQDVVNDCALTDLGFHGLPYTW 259
Score = 53.1 bits (126), Expect(3) = 2e-19
Identities = 26/62 (41%), Positives = 40/62 (64%)
Frame = -3
Query: 757 MIVLSWNCRGVGLNSTRQELKNAITVERPSLVFVCETKSGWKKSGRLIRKLGFSDACIVP 578
M VLS NCRG G QE+ + ++P++VF+ ET+ G +K+ L R+LGF +A +V
Sbjct: 76 MNVLSLNCRGCGRPEAVQEIHQLVVEKKPAVVFLMETRMGEEKALGLARRLGFQNAIVVK 135
Query: 577 SQ 572
S+
Sbjct: 136 SE 137
Score = 27.3 bits (59), Expect(3) = 2e-19
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Frame = -3
Query: 130 LYHKHSTESDHKMLVIKPNTTTP------YHPRPFRFEAFW 26
++H +TESDH L+++ P +PFR+E W
Sbjct: 291 VFHLPTTESDHAGLLVEVRHQEPGAQTRRRRHKPFRYENMW 331
>ref|XP_002447531.1| hypothetical protein SORBIDRAFT_06g002845 [Sorghum bicolor]
gi|241938714|gb|EES11859.1| hypothetical protein
SORBIDRAFT_06g002845 [Sorghum bicolor]
Length = 993
Score = 50.4 bits (119), Expect(3) = 7e-16
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Frame = -2
Query: 443 IYASPDPVICTTQWEQ-LHLFKPPSRQPWLCLGDLNEVLKPEEKRGRVPFSPSKAQWLIQ 267
IY P TT W + L+ S P L +GD+NE++ EK G +
Sbjct: 135 IYGDPHHRNTTTIWTRVLNFVVNHSTLPILAMGDMNELMNANEKCGSGKADIRRINMFCD 194
Query: 266 AMNNCELFDIGYKGPVFTWCGQK-GWNRTHERIGKC 162
+ C D+GY GP +TW ++ T +R+ +C
Sbjct: 195 YVKQCGFLDLGYSGPAYTWTNKRFSTTPTFQRLDRC 230
Score = 42.7 bits (99), Expect(3) = 7e-16
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = -3
Query: 172 LANVEWRLCFPNDCLYHKHSTESDHKMLVIKPNTTTPYHPRPFRFEAFWLEE 17
LAN EW + +P +YH SDH ++ ++T ++ + FRF+ +WL E
Sbjct: 231 LANAEWCMAYPRTTVYHLPMRRSDHAPILTMLDSTRHHNNKIFRFKNWWLME 282
Score = 37.0 bits (84), Expect(3) = 7e-16
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Frame = -3
Query: 757 MIVLSWNCRGVG---LNSTRQELKNAITVERPSLVFVCETKSGWKKSGRLIRKLGFSDAC 587
M +LSWNC+G +ST Q L IT + + F+ ET++ ++ + DA
Sbjct: 27 MNLLSWNCQGSAGSLRSSTMQHLARLITSTKSQVCFISETRNTSISRTAIVNRFNVLDAF 86
Query: 586 IVPSQXXXXXXXXXXSDLCTVTIL 515
+V +Q + ++TI+
Sbjct: 87 VVQAQGQSGGLWLIWTQAVSITII 110
>ref|XP_002445372.1| hypothetical protein SORBIDRAFT_07g013775 [Sorghum bicolor]
gi|241941722|gb|EES14867.1| hypothetical protein
SORBIDRAFT_07g013775 [Sorghum bicolor]
Length = 589
Score = 70.1 bits (170), Expect(2) = 5e-15
Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Frame = -2
Query: 458 WYFSGIYASPDPVICTTQWEQLH--LFKPPSRQPWLCLGDLNEVLKPEEKRGRVPFSPSK 285
W F+GIY P + W+ L + + Q WLC GD NEVL EK G VP +
Sbjct: 346 WRFTGIYGEPQEAMKWKTWQLLQDLAAQHQNNQAWLCAGDFNEVLYQHEKEGGVPRPQNS 405
Query: 284 AQWLIQAMNNCELFDIGYKGPVFTWCGQKGWNRTHER 174
QA+ EL D+G++G VFTW ++ +H R
Sbjct: 406 MDRFKQALEVSELHDLGFEGNVFTWRNKQSKGESHIR 442
Score = 37.7 bits (86), Expect(2) = 5e-15
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = -3
Query: 175 ALANVEWRLCFPNDCLYHKHSTESDHKMLVIKPNT----TTPYHPRPFRFEAFWLEETGC 8
A+AN EW FP + + + SDH+ LV+ P PF+FEA WL+E G
Sbjct: 448 AVANFEWLAKFPLVRVKNGDTYHSDHRALVVCTEDDLVGRKPKAQGPFKFEAEWLKEEGF 507
Query: 7 QE 2
++
Sbjct: 508 KD 509
>gb|AAP54692.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1585
Score = 55.1 bits (131), Expect(3) = 7e-15
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Frame = -2
Query: 461 VWYFSGIYASPDPVICTTQWEQLHLFKPPSRQPWLCLGDLNEVLKPEEKRGRVPFSPSKA 282
+W+ + +Y P W L+ K S WL +GD NE L E R P S ++
Sbjct: 561 LWHATFVYGEPRVENRHKMWSLLNSIKQSSNLSWLVIGDFNEALWQFEHFSRKPRSDAQM 620
Query: 281 QWLIQAMNNCELFDIGYKGPVFTWCGQK-GWNRTHERIGK 165
Q ++ CEL D+G G T+ ++ GWN R+ +
Sbjct: 621 QAFRDVLDTCELHDLGISGLPHTYDNRRGGWNNVKVRLDR 660
Score = 47.0 bits (110), Expect(3) = 7e-15
Identities = 33/96 (34%), Positives = 41/96 (42%)
Frame = -3
Query: 760 AMIVLSWNCRGVGLNSTRQELKNAITVERPSLVFVCETKSGWKKSGRLIRKLGFSDACIV 581
AM LSWNCRG+G +T QEL + VF+CET+ K RL +LG V
Sbjct: 461 AMNCLSWNCRGIGNATTVQELCALVKEASSQFVFLCETRQPVDKIKRLRNRLGLRGFAGV 520
Query: 580 PSQXXXXXXXXXXSDLCTVTILYKSSWIIHVEIHES 473
S + V IL K+ I I S
Sbjct: 521 SSDGMSGGLALFWHESVHVEILNKNERFIDAYIRLS 556
Score = 24.6 bits (52), Expect(3) = 7e-15
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 175 ALANVEWRLCFPNDCLYHKHSTESDHKMLVIKPNTTTP 62
ALA+ EWR F + H S S+H +V+K + + P
Sbjct: 661 ALADDEWRDLFSQYQVQHLVSPCSNHCPIVLKLHGSVP 698
>gb|AAO00713.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1557
Score = 55.1 bits (131), Expect(3) = 7e-15
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Frame = -2
Query: 461 VWYFSGIYASPDPVICTTQWEQLHLFKPPSRQPWLCLGDLNEVLKPEEKRGRVPFSPSKA 282
+W+ + +Y P W L+ K S WL +GD NE L E R P S ++
Sbjct: 533 LWHATFVYGEPRVENRHKMWSLLNSIKQSSNLSWLVIGDFNEALWQFEHFSRKPRSDAQM 592
Query: 281 QWLIQAMNNCELFDIGYKGPVFTWCGQK-GWNRTHERIGK 165
Q ++ CEL D+G G T+ ++ GWN R+ +
Sbjct: 593 QAFRDVLDTCELHDLGISGLPHTYDNRRGGWNNVKVRLDR 632
Score = 47.0 bits (110), Expect(3) = 7e-15
Identities = 33/96 (34%), Positives = 41/96 (42%)
Frame = -3
Query: 760 AMIVLSWNCRGVGLNSTRQELKNAITVERPSLVFVCETKSGWKKSGRLIRKLGFSDACIV 581
AM LSWNCRG+G +T QEL + VF+CET+ K RL +LG V
Sbjct: 433 AMNCLSWNCRGIGNATTVQELCALVKEASSQFVFLCETRQPVDKIKRLRNRLGLRGFAGV 492
Query: 580 PSQXXXXXXXXXXSDLCTVTILYKSSWIIHVEIHES 473
S + V IL K+ I I S
Sbjct: 493 SSDGMSGGLALFWHESVHVEILNKNERFIDAYIRLS 528
Score = 24.6 bits (52), Expect(3) = 7e-15
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 175 ALANVEWRLCFPNDCLYHKHSTESDHKMLVIKPNTTTP 62
ALA+ EWR F + H S S+H +V+K + + P
Sbjct: 633 ALADDEWRDLFSQYQVQHLVSPCSNHCPIVLKLHGSVP 670