BLASTX nr result

ID: Coptis25_contig00020264 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00020264
         (969 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002489257.1| hypothetical protein SORBIDRAFT_0011s003210 ...    62   2e-19
ref|XP_002447531.1| hypothetical protein SORBIDRAFT_06g002845 [S...    50   7e-16
ref|XP_002445372.1| hypothetical protein SORBIDRAFT_07g013775 [S...    70   5e-15
gb|AAP54692.2| retrotransposon protein, putative, unclassified [...    55   7e-15
gb|AAO00713.1| retrotransposon protein, putative, unclassified [...    55   7e-15

>ref|XP_002489257.1| hypothetical protein SORBIDRAFT_0011s003210 [Sorghum bicolor]
           gi|241947006|gb|EES20151.1| hypothetical protein
           SORBIDRAFT_0011s003210 [Sorghum bicolor]
          Length = 821

 Score = 61.6 bits (148), Expect(3) = 2e-19
 Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
 Frame = -2

Query: 470 EIKVWYFSGIYASPDPVICTTQWEQLHLFKPPSRQPWLCLGDLNEVLKPEEKRGRVPFSP 291
           +I  W  +G Y  P        W  L   +  S  PWLCLGD NEVL  EE+ G    + 
Sbjct: 173 KISHWRLTGFYGEPRWERRRESWYLLRFLRAQSSDPWLCLGDFNEVLAMEEQMG----AN 228

Query: 290 SKAQWLIQA----MNNCELFDIGYKGPVFTW 210
            +  W + A    +N+C L D+G+ G  +TW
Sbjct: 229 EREMWQVTAFQDVVNDCALTDLGFHGLPYTW 259



 Score = 53.1 bits (126), Expect(3) = 2e-19
 Identities = 26/62 (41%), Positives = 40/62 (64%)
 Frame = -3

Query: 757 MIVLSWNCRGVGLNSTRQELKNAITVERPSLVFVCETKSGWKKSGRLIRKLGFSDACIVP 578
           M VLS NCRG G     QE+   +  ++P++VF+ ET+ G +K+  L R+LGF +A +V 
Sbjct: 76  MNVLSLNCRGCGRPEAVQEIHQLVVEKKPAVVFLMETRMGEEKALGLARRLGFQNAIVVK 135

Query: 577 SQ 572
           S+
Sbjct: 136 SE 137



 Score = 27.3 bits (59), Expect(3) = 2e-19
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
 Frame = -3

Query: 130 LYHKHSTESDHKMLVIKPNTTTP------YHPRPFRFEAFW 26
           ++H  +TESDH  L+++     P         +PFR+E  W
Sbjct: 291 VFHLPTTESDHAGLLVEVRHQEPGAQTRRRRHKPFRYENMW 331


>ref|XP_002447531.1| hypothetical protein SORBIDRAFT_06g002845 [Sorghum bicolor]
           gi|241938714|gb|EES11859.1| hypothetical protein
           SORBIDRAFT_06g002845 [Sorghum bicolor]
          Length = 993

 Score = 50.4 bits (119), Expect(3) = 7e-16
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
 Frame = -2

Query: 443 IYASPDPVICTTQWEQ-LHLFKPPSRQPWLCLGDLNEVLKPEEKRGRVPFSPSKAQWLIQ 267
           IY  P     TT W + L+     S  P L +GD+NE++   EK G       +      
Sbjct: 135 IYGDPHHRNTTTIWTRVLNFVVNHSTLPILAMGDMNELMNANEKCGSGKADIRRINMFCD 194

Query: 266 AMNNCELFDIGYKGPVFTWCGQK-GWNRTHERIGKC 162
            +  C   D+GY GP +TW  ++     T +R+ +C
Sbjct: 195 YVKQCGFLDLGYSGPAYTWTNKRFSTTPTFQRLDRC 230



 Score = 42.7 bits (99), Expect(3) = 7e-16
 Identities = 18/52 (34%), Positives = 30/52 (57%)
 Frame = -3

Query: 172 LANVEWRLCFPNDCLYHKHSTESDHKMLVIKPNTTTPYHPRPFRFEAFWLEE 17
           LAN EW + +P   +YH     SDH  ++   ++T  ++ + FRF+ +WL E
Sbjct: 231 LANAEWCMAYPRTTVYHLPMRRSDHAPILTMLDSTRHHNNKIFRFKNWWLME 282



 Score = 37.0 bits (84), Expect(3) = 7e-16
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
 Frame = -3

Query: 757 MIVLSWNCRGVG---LNSTRQELKNAITVERPSLVFVCETKSGWKKSGRLIRKLGFSDAC 587
           M +LSWNC+G      +ST Q L   IT  +  + F+ ET++       ++ +    DA 
Sbjct: 27  MNLLSWNCQGSAGSLRSSTMQHLARLITSTKSQVCFISETRNTSISRTAIVNRFNVLDAF 86

Query: 586 IVPSQXXXXXXXXXXSDLCTVTIL 515
           +V +Q          +   ++TI+
Sbjct: 87  VVQAQGQSGGLWLIWTQAVSITII 110


>ref|XP_002445372.1| hypothetical protein SORBIDRAFT_07g013775 [Sorghum bicolor]
           gi|241941722|gb|EES14867.1| hypothetical protein
           SORBIDRAFT_07g013775 [Sorghum bicolor]
          Length = 589

 Score = 70.1 bits (170), Expect(2) = 5e-15
 Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
 Frame = -2

Query: 458 WYFSGIYASPDPVICTTQWEQLH--LFKPPSRQPWLCLGDLNEVLKPEEKRGRVPFSPSK 285
           W F+GIY  P   +    W+ L     +  + Q WLC GD NEVL   EK G VP   + 
Sbjct: 346 WRFTGIYGEPQEAMKWKTWQLLQDLAAQHQNNQAWLCAGDFNEVLYQHEKEGGVPRPQNS 405

Query: 284 AQWLIQAMNNCELFDIGYKGPVFTWCGQKGWNRTHER 174
                QA+   EL D+G++G VFTW  ++    +H R
Sbjct: 406 MDRFKQALEVSELHDLGFEGNVFTWRNKQSKGESHIR 442



 Score = 37.7 bits (86), Expect(2) = 5e-15
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
 Frame = -3

Query: 175 ALANVEWRLCFPNDCLYHKHSTESDHKMLVIKPNT----TTPYHPRPFRFEAFWLEETGC 8
           A+AN EW   FP   + +  +  SDH+ LV+          P    PF+FEA WL+E G 
Sbjct: 448 AVANFEWLAKFPLVRVKNGDTYHSDHRALVVCTEDDLVGRKPKAQGPFKFEAEWLKEEGF 507

Query: 7   QE 2
           ++
Sbjct: 508 KD 509


>gb|AAP54692.2| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1585

 Score = 55.1 bits (131), Expect(3) = 7e-15
 Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
 Frame = -2

Query: 461 VWYFSGIYASPDPVICTTQWEQLHLFKPPSRQPWLCLGDLNEVLKPEEKRGRVPFSPSKA 282
           +W+ + +Y  P        W  L+  K  S   WL +GD NE L   E   R P S ++ 
Sbjct: 561 LWHATFVYGEPRVENRHKMWSLLNSIKQSSNLSWLVIGDFNEALWQFEHFSRKPRSDAQM 620

Query: 281 QWLIQAMNNCELFDIGYKGPVFTWCGQK-GWNRTHERIGK 165
           Q     ++ CEL D+G  G   T+  ++ GWN    R+ +
Sbjct: 621 QAFRDVLDTCELHDLGISGLPHTYDNRRGGWNNVKVRLDR 660



 Score = 47.0 bits (110), Expect(3) = 7e-15
 Identities = 33/96 (34%), Positives = 41/96 (42%)
 Frame = -3

Query: 760 AMIVLSWNCRGVGLNSTRQELKNAITVERPSLVFVCETKSGWKKSGRLIRKLGFSDACIV 581
           AM  LSWNCRG+G  +T QEL   +       VF+CET+    K  RL  +LG      V
Sbjct: 461 AMNCLSWNCRGIGNATTVQELCALVKEASSQFVFLCETRQPVDKIKRLRNRLGLRGFAGV 520

Query: 580 PSQXXXXXXXXXXSDLCTVTILYKSSWIIHVEIHES 473
            S            +   V IL K+   I   I  S
Sbjct: 521 SSDGMSGGLALFWHESVHVEILNKNERFIDAYIRLS 556



 Score = 24.6 bits (52), Expect(3) = 7e-15
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 175 ALANVEWRLCFPNDCLYHKHSTESDHKMLVIKPNTTTP 62
           ALA+ EWR  F    + H  S  S+H  +V+K + + P
Sbjct: 661 ALADDEWRDLFSQYQVQHLVSPCSNHCPIVLKLHGSVP 698


>gb|AAO00713.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1557

 Score = 55.1 bits (131), Expect(3) = 7e-15
 Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
 Frame = -2

Query: 461 VWYFSGIYASPDPVICTTQWEQLHLFKPPSRQPWLCLGDLNEVLKPEEKRGRVPFSPSKA 282
           +W+ + +Y  P        W  L+  K  S   WL +GD NE L   E   R P S ++ 
Sbjct: 533 LWHATFVYGEPRVENRHKMWSLLNSIKQSSNLSWLVIGDFNEALWQFEHFSRKPRSDAQM 592

Query: 281 QWLIQAMNNCELFDIGYKGPVFTWCGQK-GWNRTHERIGK 165
           Q     ++ CEL D+G  G   T+  ++ GWN    R+ +
Sbjct: 593 QAFRDVLDTCELHDLGISGLPHTYDNRRGGWNNVKVRLDR 632



 Score = 47.0 bits (110), Expect(3) = 7e-15
 Identities = 33/96 (34%), Positives = 41/96 (42%)
 Frame = -3

Query: 760 AMIVLSWNCRGVGLNSTRQELKNAITVERPSLVFVCETKSGWKKSGRLIRKLGFSDACIV 581
           AM  LSWNCRG+G  +T QEL   +       VF+CET+    K  RL  +LG      V
Sbjct: 433 AMNCLSWNCRGIGNATTVQELCALVKEASSQFVFLCETRQPVDKIKRLRNRLGLRGFAGV 492

Query: 580 PSQXXXXXXXXXXSDLCTVTILYKSSWIIHVEIHES 473
            S            +   V IL K+   I   I  S
Sbjct: 493 SSDGMSGGLALFWHESVHVEILNKNERFIDAYIRLS 528



 Score = 24.6 bits (52), Expect(3) = 7e-15
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 175 ALANVEWRLCFPNDCLYHKHSTESDHKMLVIKPNTTTP 62
           ALA+ EWR  F    + H  S  S+H  +V+K + + P
Sbjct: 633 ALADDEWRDLFSQYQVQHLVSPCSNHCPIVLKLHGSVP 670


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