BLASTX nr result
ID: Coptis25_contig00020238
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00020238
(1838 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002278999.1| PREDICTED: pentatricopeptide repeat-containi... 461 e-127
emb|CAN63553.1| hypothetical protein VITISV_003195 [Vitis vinifera] 454 e-125
ref|XP_003552628.1| PREDICTED: pentatricopeptide repeat-containi... 444 e-122
ref|XP_003530467.1| PREDICTED: pentatricopeptide repeat-containi... 436 e-119
ref|XP_002329308.1| predicted protein [Populus trichocarpa] gi|2... 423 e-116
>ref|XP_002278999.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02490,
mitochondrial-like [Vitis vinifera]
Length = 650
Score = 461 bits (1186), Expect = e-127
Identities = 263/616 (42%), Positives = 392/616 (63%), Gaps = 10/616 (1%)
Frame = +2
Query: 20 MRNQWKXXXXXXXXXXXPSLK-------IPNSTKFQVNRNFTPFHYRNLHNNAFVVSNNK 178
MRNQW+ S+ + + Q R F+ F + H+ + +
Sbjct: 1 MRNQWRLLLLRTHSRSPLSISHIFSHFPVKSDHSSQTLRFFSSFLQGHSHHCVIDSTELR 60
Query: 179 FIINNRICKYSTESIAIEEKE-EHPHITVLTDIISKWNSNDEINNGLKSNDVLITHELVL 355
R +S++ +A+E+K +H V TDI SK DEI N ++S+D++++HELVL
Sbjct: 61 NFSGPRSRSFSSD-LALEDKGLDH---VVFTDIFSKPKGFDEIKNEVESSDIVVSHELVL 116
Query: 356 SMLRSLDGNVEIARKFFKFVDESENERLSSKCYNVMLGILGGRKDCVNEFWGLLEVMKNK 535
+L +L+ N E+AR F +V +E+ERLSSK YN+MLGILG V+EFW L+EVMK K
Sbjct: 117 KVLENLESNPEVARSVFDWVLRAESERLSSKSYNLMLGILGSN-GFVSEFWDLVEVMK-K 174
Query: 536 KGYGISRRTYEKVVKSFEKDGLVNDLDRLKELYKRPD-DISMKSVASGIANVLREREWED 712
KGYG+S+ Y K +++FEK+ L +DL++L+ L+ D S++ + S ++ ++R W D
Sbjct: 175 KGYGVSKAAYVKALENFEKEALGSDLEKLRGLFASGSVDDSIQKICSRVSKIIRSEVWGD 234
Query: 713 LPDDVKERILGMNCVWSNELVKMVVEKLDGFPRKMILFIWWLQGSLSFKPDKFLYDGLLR 892
+V+ ++ + +S +LV MV+E L P K ++F W++ S K DK Y+ +LR
Sbjct: 235 ---NVEGQLHNLKVTFSGDLVAMVLENLGLEPMKALIFFRWVEESDLVKHDKQTYNAMLR 291
Query: 893 VLASSHNVRQIHPIDSFWRIVEEMQGFGYEMEMNTYFFVMGLFCKRRLIEDAVELYEYKM 1072
VL I+ FW++ +EM+ GYEME+ TYF V+G F KR++I++ V+LYE+ M
Sbjct: 292 VLGREDC------IERFWKVADEMRNAGYEMEVATYFKVVGRFYKRKMIKEVVDLYEFAM 345
Query: 1073 GSADKPPVQDGIFLLRKAVMWSKELNMQLFSRVVETFTNGGNSLTTSILDMVVKSLISVN 1252
A+KP + D FLLRK V+ SK L++ LFSRVV T+T GGN LT S+LD ++KSL SV
Sbjct: 346 SGANKPSMYDCTFLLRKIVV-SKVLDISLFSRVVRTYTEGGNILTKSMLDAILKSLTSVG 404
Query: 1253 RLKECGTILKAMEKGGFVPTSEVYNKIIFHLGSVDR-GEAVLMISEMKASGNCPDSKTWT 1429
R EC +LKAME+GG+V S + NKI F L S + EA ++ M+ S P+ +TW+
Sbjct: 405 RFGECNKLLKAMEEGGYVVGSGMQNKIAFGLSSARKTDEANEFMNNMEDSDCRPNYRTWS 464
Query: 1430 SLIHGQCLAGNAKSASYSFRTMVEEVGVTDAGHAFEEVLKGFCRKRKATNAYNFLSEVVG 1609
SLI G C+AG+ AS F+ MVE+ GV+ AG+AFE ++ +C K ++ +A L ++
Sbjct: 465 SLIEGYCVAGDLDKASDCFQKMVEKEGVSYAGYAFEVLVNAYCCKGRSVDACGLLCDLAS 524
Query: 1610 QHQLRPRHLAYKMLIQSLLVQGGFNEALSLLGLMKGHGFPPFLEPFIDHISKSGTGDDAI 1789
+ + +P H YK+LI LLVQGGF AL+LLGLMK H FPPFL+PFI+++S++GTGDDAI
Sbjct: 525 KEKFKPWHSTYKLLISKLLVQGGFQAALNLLGLMKDHEFPPFLDPFIEYVSRTGTGDDAI 584
Query: 1790 SFLKAVTDRKFPSTTV 1837
+FL+A+T ++FPST+V
Sbjct: 585 TFLRAMTVKRFPSTSV 600
>emb|CAN63553.1| hypothetical protein VITISV_003195 [Vitis vinifera]
Length = 650
Score = 454 bits (1169), Expect = e-125
Identities = 261/616 (42%), Positives = 388/616 (62%), Gaps = 10/616 (1%)
Frame = +2
Query: 20 MRNQWKXXXXXXXXXXXPSLK-------IPNSTKFQVNRNFTPFHYRNLHNNAFVVSNNK 178
MRNQW+ S+ + + Q R F+ F + H+ + +
Sbjct: 1 MRNQWRLLLLRTHSRSPLSISHIFSHFPVKSDHSSQTLRFFSSFLQGHSHHCVIDSTELR 60
Query: 179 FIINNRICKYSTESIAIEEKE-EHPHITVLTDIISKWNSNDEINNGLKSNDVLITHELVL 355
R +S++ +A+E+K +H V TDI SK DEI N ++S+D++++HELVL
Sbjct: 61 NFSGPRSRSFSSD-LALEDKGLDH---VVFTDIFSKPKGFDEIKNEVESSDIVVSHELVL 116
Query: 356 SMLRSLDGNVEIARKFFKFVDESENERLSSKCYNVMLGILGGRKDCVNEFWGLLEVMKNK 535
+L +L+ N E+AR F +V +E+ERLSSK YN+MLGILG V+EFW L+EVMK K
Sbjct: 117 KVLENLESNPEVARXVFDWVLRAESERLSSKSYNLMLGILGSN-GFVSEFWDLVEVMK-K 174
Query: 536 KGYGISRRTYEKVVKSFEKDGLVNDLDRLKELYKRPD-DISMKSVASGIANVLREREWED 712
KGYG+S+ Y K +++FEK+ L +DL++L+ L+ D S++ + S ++ ++R W D
Sbjct: 175 KGYGVSKAAYVKALENFEKEALGSDLEKLRGLFASGSVDNSIQKICSRVSKIIRSEVWGD 234
Query: 713 LPDDVKERILGMNCVWSNELVKMVVEKLDGFPRKMILFIWWLQGSLSFKPDKFLYDGLLR 892
+V+ ++ + +S +LV MV+E L P K ++F W++ S K DK Y+ +LR
Sbjct: 235 ---NVEGQLHNLKVTFSGDLVAMVLENLGLEPMKALIFFRWVEESDLXKHDKXTYNAMLR 291
Query: 893 VLASSHNVRQIHPIDSFWRIVEEMQGFGYEMEMNTYFFVMGLFCKRRLIEDAVELYEYKM 1072
VL I+ FW++ +EM+ GYEME+ TY V+G F KR++I + V+LYE+ M
Sbjct: 292 VLGREDC------IERFWKVADEMRNAGYEMEVATYXKVVGRFYKRKMIXEVVDLYEFAM 345
Query: 1073 GSADKPPVQDGIFLLRKAVMWSKELNMQLFSRVVETFTNGGNSLTTSILDMVVKSLISVN 1252
A+KP + D FLLRK V+ SK L++ LFSRVV T+T GGN LT S+LD +KSL SV
Sbjct: 346 SGANKPSMYDCTFLLRKIVV-SKVLDISLFSRVVRTYTEGGNILTKSMLDAXLKSLTSVG 404
Query: 1253 RLKECGTILKAMEKGGFVPTSEVYNKIIFHLGSVDR-GEAVLMISEMKASGNCPDSKTWT 1429
R EC +LKAME+GG+V S + NKI F L S + EA ++ M+ S P+ +TW+
Sbjct: 405 RFGECNKLLKAMEEGGYVVGSGMQNKIAFGLSSARKTDEANEFMNNMEDSDCRPNYRTWS 464
Query: 1430 SLIHGQCLAGNAKSASYSFRTMVEEVGVTDAGHAFEEVLKGFCRKRKATNAYNFLSEVVG 1609
SLI G C+AG+ AS F+ MVE+ GV+ G+AFE ++ +C K ++ +A L ++
Sbjct: 465 SLIEGYCVAGDLDKASDCFQKMVEKEGVSYXGYAFEVLVNAYCCKGRSVDACGLLCDLAS 524
Query: 1610 QHQLRPRHLAYKMLIQSLLVQGGFNEALSLLGLMKGHGFPPFLEPFIDHISKSGTGDDAI 1789
+ + +P H YK+LI LLVQGGF AL+LLGLMK H FPPFL+PFI+++S++GTGDDAI
Sbjct: 525 KEKFKPWHSTYKLLISKLLVQGGFQAALNLLGLMKDHEFPPFLDPFIEYVSRTGTGDDAI 584
Query: 1790 SFLKAVTDRKFPSTTV 1837
+FL+A+T ++FPST+V
Sbjct: 585 TFLRAMTVKRFPSTSV 600
>ref|XP_003552628.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02490,
mitochondrial-like [Glycine max]
Length = 629
Score = 444 bits (1142), Expect = e-122
Identities = 245/558 (43%), Positives = 361/558 (64%), Gaps = 1/558 (0%)
Frame = +2
Query: 167 SNNKFIINNRICKYSTESIAIEEKEEHPHITVLTDIISKWNSNDEINNGLKSNDVLITHE 346
+N+ F +N ++S+E + + +H ++ DI SK +++ L SN V ITH+
Sbjct: 37 ANSTFPLNPSFRRFSSEPVLAQADTDH---LLVADIFSKPVDSEDFKTLLGSNRVSITHD 93
Query: 347 LVLSMLRSLDGNVEIARKFFKFVDESENERLSSKCYNVMLGILGGRKDCVNEFWGLLEVM 526
VL++L D NV+ AR+FF++V E+ ERLSSKCYN ML +LG V+EFW L+ VM
Sbjct: 94 AVLAVLGKFDSNVDAARRFFQWVSENHPERLSSKCYNSMLCVLG-TNGFVDEFWDLVNVM 152
Query: 527 KNKKGYGISRRTYEKVVKSFEKDGLVNDLDRLKELYKRPDDISMKSVASGIANVLREREW 706
K KKGYG+S+ E+V++SFEK G+ D+ +LK L+ D+ K++A + ++R W
Sbjct: 153 K-KKGYGVSKGVKERVLESFEKGGMDGDVAKLKGLF---DNSKEKNIAI-VCRIVRNNVW 207
Query: 707 EDLPDDVKERILGMNCVWSNELVKMVVEKLDGFPRKMILFIWWLQGSLSFKPDKFLYDGL 886
D DV+++I +N +S+E+VK V+E L P K ++F WL+ S FK D Y+ +
Sbjct: 208 GD---DVEKQIEDLNVGFSSEVVKTVLESLVLEPVKALIFFRWLEESGLFKHDGRTYNAM 264
Query: 887 LRVLASSHNVRQIHPIDSFWRIVEEMQGFGYEMEMNTYFFVMGLFCKRRLIEDAVELYEY 1066
RVL ID FW++V +M+ G+EME T+ V+G FCKRR+++DAVELYE+
Sbjct: 265 ARVLGREDL------IDRFWKLVGDMRSAGFEMEAETFVKVLGRFCKRRMVKDAVELYEF 318
Query: 1067 KMGSADKPPVQDGIFLLRKAVMWSKELNMQLFSRVVETFTNGGNSLTTSILDMVVKSLIS 1246
M A+KP VQ +FLLRK V KEL+ LFSRV++ FT GN LT S+ + V+KSL S
Sbjct: 319 AMAGANKPTVQCCVFLLRK-VAAGKELDTDLFSRVLKVFTGNGNVLTDSVANAVLKSLTS 377
Query: 1247 VNRLKECGTILKAMEKGGFVPTSEVYNKIIFHLGSV-DRGEAVLMISEMKASGNCPDSKT 1423
V R E +LK ME GFV + +KI + LG+ ++ +A ++ ++ SG+ P KT
Sbjct: 378 VGRTGEWNKVLKEMEDCGFVAGGSLQSKIAYRLGAAGNKEQAHEFMNRIEVSGSNPYRKT 437
Query: 1424 WTSLIHGQCLAGNAKSASYSFRTMVEEVGVTDAGHAFEEVLKGFCRKRKATNAYNFLSEV 1603
W SLI G C+AGN A SF+ +VE+ GV AG++F ++ +C+ +A +A L +
Sbjct: 438 WESLIQGYCVAGNLDKAFESFKEIVEKEGVASAGYSFNVLMNSYCQMNRAVDASKILCRL 497
Query: 1604 VGQHQLRPRHLAYKMLIQSLLVQGGFNEALSLLGLMKGHGFPPFLEPFIDHISKSGTGDD 1783
V + QL+P H YK+L+ LLVQGGF +AL++LGLM+ HGFPPF +PFI+H+SKSG+GDD
Sbjct: 498 VNEKQLKPWHSTYKLLVTKLLVQGGFTDALNILGLMRTHGFPPFTDPFIEHLSKSGSGDD 557
Query: 1784 AISFLKAVTDRKFPSTTV 1837
A+ FLKA+T ++FPST++
Sbjct: 558 AVLFLKAMTSKRFPSTSM 575
>ref|XP_003530467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02490,
mitochondrial-like [Glycine max]
Length = 628
Score = 436 bits (1121), Expect = e-119
Identities = 242/558 (43%), Positives = 362/558 (64%), Gaps = 1/558 (0%)
Frame = +2
Query: 167 SNNKFIINNRICKYSTESIAIEEKEEHPHITVLTDIISKWNSNDEINNGLKSNDVLITHE 346
+N+ F +N +S+E + + ++ ++ DI SK +++ L SN V+ITH+
Sbjct: 37 ANSTFQLNPSFRHFSSEPVLAQADTDN---LLVVDIFSKPADSEDFKTLLDSNRVMITHD 93
Query: 347 LVLSMLRSLDGNVEIARKFFKFVDESENERLSSKCYNVMLGILGGRKDCVNEFWGLLEVM 526
VL++L LD NVE AR+FF +V E+ ERLSSKCYN ML +LG V+EFW L++VM
Sbjct: 94 AVLAVLWKLDSNVEAARRFFLWVSENHPERLSSKCYNSMLRVLG-TNGVVHEFWDLVDVM 152
Query: 527 KNKKGYGISRRTYEKVVKSFEKDGLVNDLDRLKELYKRPDDISMKSVASGIANVLREREW 706
K KKGYG+S+ E V++SFEK G+V D+ +LK LY D+++ K++A + ++R W
Sbjct: 153 K-KKGYGVSKGVKEIVLESFEKGGMVADVAKLKGLY---DNLNEKNIAI-VCRIVRNNVW 207
Query: 707 EDLPDDVKERILGMNCVWSNELVKMVVEKLDGFPRKMILFIWWLQGSLSFKPDKFLYDGL 886
+D DV+ +I +N +S ++VKMV+E L P K ++F WL+ S FK D Y+ +
Sbjct: 208 DD---DVERQIKDLNVGFSGDVVKMVLESLASEPAKALIFFRWLEESGMFKQDGATYNAM 264
Query: 887 LRVLASSHNVRQIHPIDSFWRIVEEMQGFGYEMEMNTYFFVMGLFCKRRLIEDAVELYEY 1066
RVL + ID FW++V +M+ G+EME T+ V+G FCKRR+++DAVELYE+
Sbjct: 265 ARVLGREDS------IDRFWKLVGDMRNAGFEMEFETFVKVLGRFCKRRMVKDAVELYEF 318
Query: 1067 KMGSADKPPVQDGIFLLRKAVMWSKELNMQLFSRVVETFTNGGNSLTTSILDMVVKSLIS 1246
M +KP VQ +FLLRK V KEL+M LF RV++ FT GN LT S+ D V+K+L S
Sbjct: 319 AMTGVNKPTVQCCVFLLRK-VAAGKELDMDLFLRVLKVFTGSGNLLTDSMADAVLKTLTS 377
Query: 1247 VNRLKECGTILKAMEKGGFVPTSEVYNKIIFHLGSV-DRGEAVLMISEMKASGNCPDSKT 1423
V R E +LK ME G + + +KI + LG+ ++ +A ++ ++AS + PD KT
Sbjct: 378 VGRTGEWNKVLKEMEIVGCCRCN-LQSKIAYRLGAAGNKEQAHEFMNRIEASRSSPDRKT 436
Query: 1424 WTSLIHGQCLAGNAKSASYSFRTMVEEVGVTDAGHAFEEVLKGFCRKRKATNAYNFLSEV 1603
W SLI G C+AGN A SF+ +VE+ GV AG++F+ ++ +C+ +A +A L +
Sbjct: 437 WDSLIEGHCVAGNLDKAFESFKEIVEKEGVASAGYSFDVLMNSYCQMNRAVDASKILCRL 496
Query: 1604 VGQHQLRPRHLAYKMLIQSLLVQGGFNEALSLLGLMKGHGFPPFLEPFIDHISKSGTGDD 1783
V + +L+P H YK+L+ LLVQGGF +AL++LGLM+ GFPPF +PFI+H+SKSG+G+
Sbjct: 497 VNEKKLKPWHSTYKLLVTKLLVQGGFTDALNILGLMRTLGFPPFTDPFIEHLSKSGSGNA 556
Query: 1784 AISFLKAVTDRKFPSTTV 1837
A FLKA+T ++FPST++
Sbjct: 557 AALFLKAMTSKRFPSTSM 574
>ref|XP_002329308.1| predicted protein [Populus trichocarpa] gi|222870762|gb|EEF07893.1|
predicted protein [Populus trichocarpa]
Length = 658
Score = 423 bits (1088), Expect = e-116
Identities = 242/620 (39%), Positives = 382/620 (61%), Gaps = 14/620 (2%)
Frame = +2
Query: 20 MRNQWKXXXXXXXXXXXPSLKIPNSTKFQVNRNFTP--------FHYRNLHNNAFVVSNN 175
MR+ W+ P + S FQV + +P H +L ++ F +
Sbjct: 1 MRHSWRILLYRSY----PRSSLKFSNHFQVLQQHSPPPLRSLSSLHTLSLQDSHFSKTPQ 56
Query: 176 KFIINNRICKY----STESIAIEEKEEHPHITVLTDIISKWNSNDEINNGLKSNDVLITH 343
K I N+ + S+E+ +E ++ + ++ D+ +K++ +D+IN L+ + V+I+H
Sbjct: 57 KHNIYNKNPLFARNLSSEASLVEPTKDPDLVLLVCDVFTKFDDSDDINKELELSSVVISH 116
Query: 344 ELVLSMLRSLDGNVEIARKFFKFVDESENERLSSKCYNVMLGILGGRKDCVNEFWGLLEV 523
+LVL +L+SL +A++FF +V + ++ERLSSK YN MLGILG V EFW L++
Sbjct: 117 DLVLKVLKSLGSKPGVAKRFFDWVLKKDSERLSSKSYNWMLGILGVN-GLVAEFWELVDK 175
Query: 524 MKNKKGYGISRRTYEKVVKSFEKDGLVNDLDRLKELYKRPD-DISMKSVASGIANVLRER 700
MK K GYG+S T ++V++ FE +GL D+++LK ++ D S++ + ++ ++R +
Sbjct: 176 MKTK-GYGVSGVTRDRVLEKFENEGLKGDIEKLKGVFATGSIDNSVEKIGLRMSRIVRSK 234
Query: 701 EWEDLPDDVKERILGMNCVWSNELVKMVVEKLDGFPRKMILFIWWLQGSLSFKPDKFLYD 880
W + DV+ I G++ +S+ LVK+V+E L P K ++F W++ S K D Y+
Sbjct: 235 FWGE---DVEGEIKGLSAEFSSGLVKIVLEHLAIEPMKALIFFRWVEESELCKHDGGSYN 291
Query: 881 GLLRVLASSHNVRQIHPIDSFWRIVEEMQGFGYEMEMNTYFFVMGLFCKRRLIEDAVELY 1060
+ RVL S ID FW++++EM+ G+EME+ T+ V+ F +R++I++AV+LY
Sbjct: 292 AMARVLGSKDC------IDRFWKVIDEMRSNGFEMEVETFDTVLAWFMRRKMIKEAVDLY 345
Query: 1061 EYKMGSADKPPVQDGIFLLRKAVMWSKELNMQLFSRVVETFTNGGNSLTTSILDMVVKSL 1240
E+ M A+KP + +LLR V+ K+L++ LFSR+V+ FT GN LT S+LD V+K+L
Sbjct: 346 EFAMNGANKPSSKYCTYLLRNIVV-CKQLDIGLFSRIVKVFTENGNVLTDSMLDAVLKAL 404
Query: 1241 ISVNRLKECGTILKAMEKGGFVPTSEVYNKIIFHLGSVDRG-EAVLMISEMKASGNCPDS 1417
SV R KEC IL+ M GFV + + KI F L S + EA+ + M++SG+ D+
Sbjct: 405 RSVGRFKECNKILREMMVAGFVASGNLQRKIAFGLTSAGKNYEAIEFVDHMESSGSDLDN 464
Query: 1418 KTWTSLIHGQCLAGNAKSASYSFRTMVEEVGVTDAGHAFEEVLKGFCRKRKATNAYNFLS 1597
K W SLI G C++G+ + AS F+ MVE+ GVT AG+A E ++ +C K +A +A N L
Sbjct: 465 KAWASLIEGHCVSGDLEKASDCFKKMVEKKGVTGAGYAVELLVNAYCLKNRAGDACNLLC 524
Query: 1598 EVVGQHQLRPRHLAYKMLIQSLLVQGGFNEALSLLGLMKGHGFPPFLEPFIDHISKSGTG 1777
+ V Q+QL P YK+LI LL QGGF +AL+LLGLM+ HG PP+++PF + +SKSGTG
Sbjct: 525 DYVCQNQLHPWRTTYKVLISKLLAQGGFKDALNLLGLMQSHGIPPYIDPFFEFVSKSGTG 584
Query: 1778 DDAISFLKAVTDRKFPSTTV 1837
DDAI+F+ A+T +KFPS +V
Sbjct: 585 DDAIAFMNAMTTKKFPSISV 604