BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00020236
         (441 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265876.1| PREDICTED: pentatricopeptide repeat-containi...   123   2e-26
emb|CAN79718.1| hypothetical protein VITISV_012741 [Vitis vinifera]   100   9e-20
ref|XP_002511816.1| pentatricopeptide repeat-containing protein,...    91   1e-16
ref|XP_002331436.1| predicted protein [Populus trichocarpa] gi|2...    89   5e-16
gb|ABA18111.1| pentatricopeptide repeat protein [Arabidopsis are...    81   8e-14

>ref|XP_002265876.1| PREDICTED: pentatricopeptide repeat-containing protein At3g42630
           [Vitis vinifera] gi|297736023|emb|CBI24061.3| unnamed
           protein product [Vitis vinifera]
          Length = 423

 Score =  123 bits (308), Expect = 2e-26
 Identities = 66/126 (52%), Positives = 80/126 (63%), Gaps = 17/126 (13%)
 Frame = -2

Query: 329 WKQNESVTGEDYYLDFASPMSMLGSKEIPCYA-----------------TLSTLMLRFAD 201
           WKQ  SV G+D Y+D+   +  L  K +P  A                 TLS LML +AD
Sbjct: 43  WKQERSVDGKDNYVDYTPLIQALSRKRLPHVAQELLFEMKSEGFLPNNSTLSALMLCYAD 102

Query: 200 KKLFSQARAIWDEIINSSFVPNIKVVSHLMDAYGKMGHFDEVVRILHEVISRDFSLCSEA 21
             LF +A+A+WDEIINSSF PNI++VS L+DAYGKMGHF EV RILH+V SRDF+   E 
Sbjct: 103 NGLFPKAQALWDEIINSSFGPNIQIVSKLIDAYGKMGHFGEVTRILHQVSSRDFNFMHEV 162

Query: 20  YSSAIS 3
           YS AIS
Sbjct: 163 YSLAIS 168


>emb|CAN79718.1| hypothetical protein VITISV_012741 [Vitis vinifera]
          Length = 446

 Score =  100 bits (250), Expect = 9e-20
 Identities = 48/91 (52%), Positives = 62/91 (68%)
 Frame = -2

Query: 329 WKQNESVTGEDYYLDFASPMSMLGSKEIPCYATLSTLMLRFADKKLFSQARAIWDEIINS 150
           WKQ  SV G+D Y+D+   +  L  K +P  A      ++  D  LF +A+A+WDEIINS
Sbjct: 105 WKQERSVDGKDNYVDYTPLIQALSRKRLPHVAQELLFEMKSEDNGLFPKAQALWDEIINS 164

Query: 149 SFVPNIKVVSHLMDAYGKMGHFDEVVRILHE 57
           SF PNI++VS L+DAYGKMGHF EV RILH+
Sbjct: 165 SFGPNIQIVSKLIDAYGKMGHFGEVTRILHQ 195


>ref|XP_002511816.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548996|gb|EEF50485.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 427

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 59/147 (40%), Positives = 83/147 (56%), Gaps = 17/147 (11%)
 Frame = -2

Query: 392 IFSSFSHFPKNSSDTKVKIRCWKQNESVTGEDYYLDFASPMSMLGSKEIPCYA------- 234
           +FSS    P N    +  I  WKQ++S + ++  +D AS +  L SK  P  A       
Sbjct: 29  LFSS-QRDPTNRPLARKIIYQWKQDQSFSCKE--VDCASLVQNLHSKRTPHLAQEILLEM 85

Query: 233 ----------TLSTLMLRFADKKLFSQARAIWDEIINSSFVPNIKVVSHLMDAYGKMGHF 84
                     TLS ++L +AD  L  QA+AIW  ++N SF P+I++VS L+DAY K GHF
Sbjct: 86  KSQGYVLNNPTLSAILLCYADNGLLPQAQAIWKHMLNGSFTPSIQIVSRLIDAYSKKGHF 145

Query: 83  DEVVRILHEVISRDFSLCSEAYSSAIS 3
           +EV+ IL ++   +FSL  EAYS AIS
Sbjct: 146 NEVMNILDQLSYSNFSLLHEAYSLAIS 172


>ref|XP_002331436.1| predicted protein [Populus trichocarpa] gi|222873650|gb|EEF10781.1|
           predicted protein [Populus trichocarpa]
          Length = 428

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 58/160 (36%), Positives = 87/160 (54%), Gaps = 18/160 (11%)
 Frame = -2

Query: 428 SLLHNIQNKPLLIFSSFSHFPKNSSDTKVKIRCWKQNESVTGEDYYLDFASPMSMLGSKE 249
           +++ + + K   IFS     PK  +  +  IR WK+++ V G++   D AS +  L    
Sbjct: 15  NVIGSYKPKRFAIFS-IKRDPKKRALAQKMIRQWKRDQGVFGKETCADCASLIQTLCKHR 73

Query: 248 IPCYA-----------------TLSTLMLRFADKKLFSQARAIWDEIINSSFVPNIKVVS 120
            P  A                 TLS +ML +AD  L  QA+AIW+E++ SSFVP+++V+S
Sbjct: 74  RPHLAEELLLELKCEGFLPDNRTLSAMMLCYADSGLLPQAQAIWEEMLYSSFVPSVQVIS 133

Query: 119 HLMDAYGKMGHFDEVVRILHEVIS-RDFSLCSEAYSSAIS 3
            L+D Y K G FDEV++IL ++ S R F    + YS AIS
Sbjct: 134 DLIDIYAKSGLFDEVIKILDQLSSLRTFDFLPQVYSLAIS 173


>gb|ABA18111.1| pentatricopeptide repeat protein [Arabidopsis arenosa]
          Length = 419

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 42/82 (51%), Positives = 55/82 (67%)
 Frame = -2

Query: 248 IPCYATLSTLMLRFADKKLFSQARAIWDEIINSSFVPNIKVVSHLMDAYGKMGHFDEVVR 69
           +P Y TL  LML FA+     +AR IWDEI+NSSFVP++ VVS L+ AY ++G FDEV +
Sbjct: 83  LPNYRTLCALMLCFAENGFVLRARTIWDEILNSSFVPDVFVVSKLISAYEQLGFFDEVAK 142

Query: 68  ILHEVISRDFSLCSEAYSSAIS 3
           I  +V +R  +L    YS AIS
Sbjct: 143 ITKDVAARHSTLLPVVYSLAIS 164