BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00020204
         (1131 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331746.1| predicted protein [Populus trichocarpa] gi|2...   194   3e-47
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...   182   1e-43
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   175   2e-41
ref|XP_002331338.1| predicted protein [Populus trichocarpa] gi|2...   171   3e-40
gb|AAD12028.1| putative non-LTR retroelement reverse transcripta...   163   8e-38

>ref|XP_002331746.1| predicted protein [Populus trichocarpa] gi|222874272|gb|EEF11403.1|
            predicted protein [Populus trichocarpa]
          Length = 503

 Score =  194 bits (493), Expect = 3e-47
 Identities = 125/371 (33%), Positives = 177/371 (47%), Gaps = 2/371 (0%)
 Frame = +2

Query: 23   RRQLWREIVDMSCTILK-PWIILGDFNSIMNSQEKVGGLEVRPQQFNDLLHCVTSAGLVD 199
            R  LW +IV  S      PWI++GDFN+I N   ++GG        + L  C+  A + D
Sbjct: 101  REALWSDIVSRSDGWESTPWILMGDFNAIRNQSHRLGGSTTWAGTMDRLDTCIREAKVDD 160

Query: 200  IKYKGNFLTWNNK-QEERISCKLDRVMVNSEWIDEFEDHEAEFLNPGAISDHSSMVVTSL 376
            ++Y G   TW+N+  E  I  KLDRV+VN +W   F   E  FL P  ISDHS MVV  +
Sbjct: 161  LRYSGMHYTWSNQCPENLIMRKLDRVLVNEKWNLNFPLSEVRFL-PSGISDHSPMVVKVI 219

Query: 377  VQRNQXXXXXXXXXXWHKEEGFMKTVEEAWQSPVVGNPMYVFMKKLKLTKGALIAWNRER 556
                           W  +                G PMY     LK  K  L  +N   
Sbjct: 220  GNDQNIKKPFRFFDMWMDQNSG-------------GCPMYQLCCNLKKLKQELKLFNMAH 266

Query: 557  VGNVINRVKEKKKQMDEIQTELQQQPMDRGLIRREQEAIKHYVQAAVSEEGFYKQKSRDQ 736
              N+ +RVK+ K +MD+ Q  L     +  L  RE++ +  Y     +EE F+KQK+R Q
Sbjct: 267  FSNISDRVKDAKNEMDKAQQALHTAHENPILCMRERDVVHKYASTVRAEESFFKQKARIQ 326

Query: 737  VISVGDNNTSYFFKSVQARRIVNKITCLVDKDGNTMKDFNEIGDECERFYKELYRPDQMQ 916
             +S+GD NTSYF KSV  R   NK+  L  +DG  ++    +  E   ++  +   DQM 
Sbjct: 327  WLSLGDQNTSYFHKSVNGRHNRNKLLSLTREDGEVVEGHEAVKSEVIAYFHRVLGVDQMP 386

Query: 917  GMDFTVFQEIGPRNTIQSIDLEELQAPISRDEIIKALADIGNDKAPGSDGFSSFFFKCTW 1096
             +      E      + S     L   ++R EI  A+  + N+KAPG DGF++ FFK  W
Sbjct: 387  RVLNEEVMESAINLKLSSTQQHVLAQVVTRKEIKHAMFSLKNNKAPGLDGFNAGFFKRMW 446

Query: 1097 RIIGDEFIKAV 1129
             I+G++ I AV
Sbjct: 447  HIVGEDVINAV 457


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score =  182 bits (463), Expect = 1e-43
 Identities = 112/374 (29%), Positives = 201/374 (53%), Gaps = 4/374 (1%)
 Frame = +2

Query: 20   ERRQLWREIVDMSCTILKPWIILGDFNSIMNSQEKVGGLEVRPQQFNDLLHCVTSAGLVD 199
            +R+ LW E+ +      +P I++GD+N++ ++Q+++ G +V   + +DL   V  A L++
Sbjct: 116  DRKVLWEELYNFVSVCHEPCILIGDYNAVYSAQDRLNGNDVSEAETSDLRSFVLKAQLLE 175

Query: 200  IKYKGNFLTWNNKQ--EERISCKLDRVMVNSEWIDEFEDHEAEFLNPGAISDHSSMVVTS 373
                G F +WNNK    +RIS ++D+  VN  WI+++ D   E+   G ISDHS ++   
Sbjct: 176  APTTGLFYSWNNKSIGADRISSRIDKSFVNVAWINQYPDVVVEYREAG-ISDHSPLIFNL 234

Query: 374  LVQRNQXXXXXXXXXXWHKEEGFMKTVEEAWQSPVVGNPMYVFMKKLKLTKGALIAWNRE 553
              Q ++             + GF++ V+EAW S      M     +L+  K AL +++ +
Sbjct: 235  ATQHDEGGRPFKFLNFLADQNGFVEVVKEAWGSANHRFKMKNIWVRLQAVKRALKSFHSK 294

Query: 554  RVGNVINRVKEKKKQMDEIQTELQQQPMDRGLIRREQEAIKHYVQAAVSEEGFYKQKSRD 733
            +      +V+E ++++  +Q  L +      L   E++ I    + +  +E   KQKSR 
Sbjct: 295  KFSKAHCQVEELRRKLAAVQA-LPEVSQVSELQEEEKDLIAQLRKWSTIDESILKQKSRI 353

Query: 734  QVISVGDNNTSYFFKSVQARRIVNKITCLVDKDGNTMKDFNEIGDECERFYKELY--RPD 907
            Q +S+GD+N+ +FF +++ R+  NKI  L +  G+ + +  EI +E   FY+ L      
Sbjct: 354  QWLSLGDSNSKFFFTAIKVRKARNKIVLLQNDRGDQLTENTEIQNEICNFYRRLLGTSSS 413

Query: 908  QMQGMDFTVFQEIGPRNTIQSIDLEELQAPISRDEIIKALADIGNDKAPGSDGFSSFFFK 1087
            Q++ +D  V + +G +  + +    +L  PI+  EI +ALADI + KAPG DGF+S FFK
Sbjct: 414  QLEAIDLHVVR-VGAK--LSATSCAQLVQPITIQEIDQALADIDDTKAPGLDGFNSVFFK 470

Query: 1088 CTWRIIGDEFIKAV 1129
             +W +I  E  + +
Sbjct: 471  KSWLVIKQEIYEGI 484


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
            72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  175 bits (444), Expect = 2e-41
 Identities = 122/387 (31%), Positives = 187/387 (48%), Gaps = 15/387 (3%)
 Frame = +2

Query: 14   MMERRQLWREIVDMSCTIL---KPWIILGDFNSIMNSQEKVGGLE--VRPQQFNDLLHCV 178
            M ER++LW ++ D S + +   KPWII GDFN I++ +E     E  V      D    V
Sbjct: 1    MEERKELWNDLRDHSDSPIIRSKPWIIFGDFNEILDMEEHSNSRENPVTTTGMRDFQMAV 60

Query: 179  TSAGLVDIKYKGNFLTWNNKQE-ERISCKLDRVMVNSEWIDEFEDHEAEFLNPGAISDHS 355
                + D+ Y G   TW+NK+E + I+ KLDRV+VN  W+  F    + F   G  SDH 
Sbjct: 61   NHCSITDLAYHGPLFTWSNKRENDLIAKKLDRVLVNDVWLQSFPRSYSVF-EAGGCSDHL 119

Query: 356  SMVVTSLVQRNQXXXXXXXXXXWH---KEEGFMKTVEEAWQSP----VVGNPMYVFMKKL 514
               +   V               +   + E F+ TVE  W       +  + ++ F KKL
Sbjct: 120  RCRINLNVGAGAVVKGKRPFKFVNVITEMEHFIPTVESYWNETEAIFMSTSSLFRFSKKL 179

Query: 515  KLTKGALIAWNRERVGNVINRVKEKKKQMDEIQTELQQQPMDRGLIRREQEAIKHYVQAA 694
            K  K  L    +ER+GN++ + KE  + + + Q      P    + + E EA   +   A
Sbjct: 180  KGLKPLLRNLGKERLGNLVKQTKEAFETLCQKQAMKMANPSPSSM-QEENEAYAKWDHIA 238

Query: 695  VSEEGFYKQKSRDQVISVGDNNTSYFFKSVQARRIVNKITCLVDKDGNTMKDFNEIGDEC 874
            V EE F KQ+S+   + +GD N   F ++V AR   N I  ++  DG+      +I  E 
Sbjct: 239  VLEEKFLKQRSKLHWLDIGDRNNKAFHRAVVAREAQNSIREIICHDGSVASQEEKIKTEA 298

Query: 875  ERFYKELYR--PDQMQGMDFTVFQEIGPRNTIQSIDLEELQAPISRDEIIKALADIGNDK 1048
            E  ++E  +  P+  +G+     Q++ P     S D E L   +S +EI K +  + NDK
Sbjct: 299  EHHFREFLQLIPNDFEGIAVEELQDLLPYRCSDS-DKEMLTNHVSAEEIHKVVFSMPNDK 357

Query: 1049 APGSDGFSSFFFKCTWRIIGDEFIKAV 1129
            +PG DG+++ F+K  W IIG EFI A+
Sbjct: 358  SPGPDGYTAEFYKGAWNIIGAEFILAI 384


>ref|XP_002331338.1| predicted protein [Populus trichocarpa] gi|222873371|gb|EEF10502.1|
            predicted protein [Populus trichocarpa]
          Length = 819

 Score =  171 bits (433), Expect = 3e-40
 Identities = 104/302 (34%), Positives = 153/302 (50%), Gaps = 5/302 (1%)
 Frame = +2

Query: 23   RRQLWREIVDMS----CTILKPWIILGDFNSIMNSQEKVGGLEVRPQQFNDLLHCVTSAG 190
            R  LW +IV  S     T+   WI++GDFN+I N  +++GG        + L  C+  A 
Sbjct: 494  REALWSDIVSRSDGWESTL---WILIGDFNAIRNQSDRLGGSTTWAGTMDRLDTCIREAK 550

Query: 191  LVDIKYKGNFLTWNNK-QEERISCKLDRVMVNSEWIDEFEDHEAEFLNPGAISDHSSMVV 367
            + D++Y G   TW+N+  E  I  KLDRV+VN +W  +F   EA FL P  +SDHS MVV
Sbjct: 551  VDDLRYSGMHYTWSNQCPENLIMRKLDRVLVNEKWNLKFPLSEARFL-PSGMSDHSPMVV 609

Query: 368  TSLVQRNQXXXXXXXXXXWHKEEGFMKTVEEAWQSPVVGNPMYVFMKKLKLTKGALIAWN 547
              +               W   + FM  V++ W     G PMY    KL+  K  L  +N
Sbjct: 610  KVIGNDQNKKKPFRFFDMWMDHDEFMPLVKKVWDQNSRGCPMYQLCCKLRKLKQELKLFN 669

Query: 548  RERVGNVINRVKEKKKQMDEIQTELQQQPMDRGLIRREQEAIKHYVQAAVSEEGFYKQKS 727
                 N+ +RV++ K +MD+ Q  L     +  L  RE++ +  Y     +EE F+KQK+
Sbjct: 670  MAHFSNISDRVRDAKNKMDKAQQALHTAHENPILCMRERDVVHKYASTVRAEESFFKQKA 729

Query: 728  RDQVISVGDNNTSYFFKSVQARRIVNKITCLVDKDGNTMKDFNEIGDECERFYKELYRPD 907
            R Q +S+GD NTSYF KSV  R+  NK+  L  +DG  ++    +  E   ++  +   D
Sbjct: 730  RIQWLSLGDQNTSYFHKSVNGRQNRNKLLSLTREDGEVVERQEAVKSEVISYFHRVLGVD 789

Query: 908  QM 913
            QM
Sbjct: 790  QM 791


>gb|AAD12028.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1447

 Score =  163 bits (412), Expect = 8e-38
 Identities = 120/388 (30%), Positives = 187/388 (48%), Gaps = 18/388 (4%)
 Frame = +2

Query: 20   ERRQLWREIVDMSCTIL---KPWIILGDFNSIMNSQE--KVGGLEVRPQQFNDLLHCVTS 184
            +R+ LW E+ D   + +   KPWII GDFN  +  +E  KV    V      D    V  
Sbjct: 523  DRKVLWNELQDHYDSPIIKKKPWIIFGDFNETLELEEHSKVEDNPVVSMGMRDFRSMVNY 582

Query: 185  AGLVDIKYKGNFLTWNNKQE-ERISCKLDRVMVNSEWIDEFEDHEAEFLNPGAISDHSSM 361
              L D+ + G   TW+NK+E + I+ KLDRVMVN  W   F    + F   G   DH   
Sbjct: 583  CSLTDMAHHGPLYTWSNKREHDLIAKKLDRVMVNDVWTQSFPQSYSVF-EAGGCLDHLRG 641

Query: 362  VVT------SLVQRNQXXXXXXXXXXWHKEEGFMKTVEEAWQSP----VVGNPMYVFMKK 511
             +       S+V+  +            + E F  TV+  W+      +  + ++ F KK
Sbjct: 642  RINLNDGPGSIVRGKRPFKFVNVLT---EMEDFKPTVDSYWKETEPIFLSTSSLFRFSKK 698

Query: 512  LKLTKGALIAWNRERVGNVINRVKEKKKQMDEIQTELQQQPMDRGLIRREQEAIKHYVQA 691
            LK  K  L    +ER+GN++ + +E    + + Q      P    + + E EA   +   
Sbjct: 699  LKSLKPLLRNLAKERLGNLVKKTREAYDTLCKKQESTLNNPTPNAM-KEEVEAHDRWEHV 757

Query: 692  AVSEEGFYKQKSRDQVISVGDNNTSYFFKSVQARRIVNKITCLVDKDGNTMKDFNEIGDE 871
            A  EE F K+KS+   +  GD N   F ++V  R   N I+ +  +DG+     +EI   
Sbjct: 758  AGLEEKFLKKKSKLHWLDGGDKNNKAFHRAVVTREAQNSISEIQCQDGSVTAKGDEIKAY 817

Query: 872  CERFYKELYR--PDQMQGMDFTVFQEIGPRNTIQSIDLEELQAPISRDEIIKALADIGND 1045
             ERF++E  +  P++ +G+     Q++ P    ++ + E L   ++ +EI K L  + ND
Sbjct: 818  AERFFREFLQLIPNEYEGVTMADLQDLLPFRCSET-EHELLTRVVTAEEIKKVLFSMPND 876

Query: 1046 KAPGSDGFSSFFFKCTWRIIGDEFIKAV 1129
            K+PG DGF+S FFK TW I+G+EFI A+
Sbjct: 877  KSPGPDGFTSEFFKATWEILGNEFILAI 904