BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00020177
         (1059 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, puta...   374   e-101
emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]   365   1e-98
ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II su...   364   2e-98
ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerase II su...   361   2e-97
ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerase II su...   359   7e-97

>ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
           gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase
           II subunit, putative [Ricinus communis]
          Length = 318

 Score =  374 bits (959), Expect = e-101
 Identities = 188/234 (80%), Positives = 203/234 (86%)
 Frame = -3

Query: 703 PKIKIREMKDDYLKFELRETDASMANALRRVMLAEVPTIAIDLVEIEVNSTVLNDEFISH 524
           P+IKIRE+KDDY KFELR+TDASMANALRRVM+AEVPT+AIDLVEIEVNS+VLNDEFI+H
Sbjct: 10  PRIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAH 69

Query: 523 RLGLIPLTSDRAMDMRFSRDCDACDGDGQCEYCSVEFHLSVRCDQDQTQDVTSADLQSTD 344
           RLGLIPLTS+RAM MRFSRDCDACDGDGQC+YCSVEFHL  +C  DQT DVTS DL S+D
Sbjct: 70  RLGLIPLTSERAMSMRFSRDCDACDGDGQCDYCSVEFHLRAKCITDQTLDVTSKDLYSSD 129

Query: 343 PTVVPVDVAARSSSSGYDASENRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVT 164
            TVVPVD    S SSGYD+SE RGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVT
Sbjct: 130 HTVVPVDF---SDSSGYDSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVT 186

Query: 163 FMYEPEIRINXXXXXXXXXXEKNSWIESSPTKVFGIDPNTHQVMVVDAEAYTYD 2
           FMYEP+I IN          EK SW+ESSPTKVF IDPNT QV+VVD EAYTYD
Sbjct: 187 FMYEPDIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTQQVVVVDPEAYTYD 240


>emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
          Length = 318

 Score =  365 bits (936), Expect = 1e-98
 Identities = 184/234 (78%), Positives = 202/234 (86%)
 Frame = -3

Query: 703 PKIKIREMKDDYLKFELRETDASMANALRRVMLAEVPTIAIDLVEIEVNSTVLNDEFISH 524
           PKIKIRE+KDDY KFELRETDASMANALRRVM+AEVPT+AIDLVEIEVNS+VLNDEFI+H
Sbjct: 10  PKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAH 69

Query: 523 RLGLIPLTSDRAMDMRFSRDCDACDGDGQCEYCSVEFHLSVRCDQDQTQDVTSADLQSTD 344
           RLGLIPLTS+RAM MRFSRDCDACDGDGQCE+CSVEFHL  +C  D+T DVTS DL S+D
Sbjct: 70  RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDVTSKDLISSD 129

Query: 343 PTVVPVDVAARSSSSGYDASENRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVT 164
            TVVPVD    S SSGYD+++ +GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVT
Sbjct: 130 HTVVPVDF---SDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVT 186

Query: 163 FMYEPEIRINXXXXXXXXXXEKNSWIESSPTKVFGIDPNTHQVMVVDAEAYTYD 2
           FMYEPEI IN          EK SW+ESSPTKVF ID ++ QV+V DAEAYTYD
Sbjct: 187 FMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTYD 240


>ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A [Vitis
           vinifera]
          Length = 318

 Score =  364 bits (934), Expect = 2e-98
 Identities = 184/234 (78%), Positives = 202/234 (86%)
 Frame = -3

Query: 703 PKIKIREMKDDYLKFELRETDASMANALRRVMLAEVPTIAIDLVEIEVNSTVLNDEFISH 524
           PKIKIRE+KDDY KFELRETDASMANALRRVM+AEVPT+AIDLVEIEVNS+VLNDEFI+H
Sbjct: 10  PKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAH 69

Query: 523 RLGLIPLTSDRAMDMRFSRDCDACDGDGQCEYCSVEFHLSVRCDQDQTQDVTSADLQSTD 344
           RLGLIPLTS+RAM MRFSRDCDACDGDGQCE+CSVEFHL  +C  D+T DVTS DL S+D
Sbjct: 70  RLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDVTSKDLISSD 129

Query: 343 PTVVPVDVAARSSSSGYDASENRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVT 164
            TVVPVD    S SSGYD+++ +GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVT
Sbjct: 130 HTVVPVDF---SDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVT 186

Query: 163 FMYEPEIRINXXXXXXXXXXEKNSWIESSPTKVFGIDPNTHQVMVVDAEAYTYD 2
           FMYEPEI IN          EK SW+ESSPTKVF ID ++ QV+V DAEAYTYD
Sbjct: 187 FMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTYD 240


>ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Glycine max]
          Length = 319

 Score =  361 bits (926), Expect = 2e-97
 Identities = 181/234 (77%), Positives = 199/234 (85%)
 Frame = -3

Query: 703 PKIKIREMKDDYLKFELRETDASMANALRRVMLAEVPTIAIDLVEIEVNSTVLNDEFISH 524
           P++KIRE+KDDY KFELR+TDAS+ANALRRVM+AEVPT+AIDLVEIEVNS+VLNDEFI+H
Sbjct: 11  PRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAH 70

Query: 523 RLGLIPLTSDRAMDMRFSRDCDACDGDGQCEYCSVEFHLSVRCDQDQTQDVTSADLQSTD 344
           RLGLIPLTS+RAM MRFSRDCDACDGDGQCE+CSVEFHL V+C  DQT DVTS DL S+D
Sbjct: 71  RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDVTSKDLYSSD 130

Query: 343 PTVVPVDVAARSSSSGYDASENRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVT 164
           PTV PVD    S  S  D+  NRGIIIVKLRRGQEL+LRAIARKGIGKDHAKWSPAATVT
Sbjct: 131 PTVSPVDF---SDPSATDSDNNRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVT 187

Query: 163 FMYEPEIRINXXXXXXXXXXEKNSWIESSPTKVFGIDPNTHQVMVVDAEAYTYD 2
           FMYEPEI IN          EK  W++SSPT+VF IDP T QVMVVDAEAYTYD
Sbjct: 188 FMYEPEIHINEDLMETLTLEEKREWVDSSPTRVFEIDPVTQQVMVVDAEAYTYD 241


>ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Glycine max]
          Length = 320

 Score =  359 bits (921), Expect = 7e-97
 Identities = 180/234 (76%), Positives = 200/234 (85%)
 Frame = -3

Query: 703 PKIKIREMKDDYLKFELRETDASMANALRRVMLAEVPTIAIDLVEIEVNSTVLNDEFISH 524
           P++KIRE+KDDY KFELR+TDAS+ANALRRVM+AEVPT+AIDLVEIEVNS+VLNDEFI+H
Sbjct: 11  PRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAH 70

Query: 523 RLGLIPLTSDRAMDMRFSRDCDACDGDGQCEYCSVEFHLSVRCDQDQTQDVTSADLQSTD 344
           RLGLIPLTS+RAM MRFSRDCDACDGDGQCE+CSVEFHL V+C  DQT DVTS DL S+D
Sbjct: 71  RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDVTSKDLYSSD 130

Query: 343 PTVVPVDVAARSSSSGYDASENRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVT 164
           PTV PVD +  S++   D   NRGIIIVKLRRGQEL+LRAIARKGIGKDHAKWSPAATVT
Sbjct: 131 PTVSPVDFSDPSATDSPD--NNRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVT 188

Query: 163 FMYEPEIRINXXXXXXXXXXEKNSWIESSPTKVFGIDPNTHQVMVVDAEAYTYD 2
           FMYEPEI IN          EK  W++SSPT+VF IDP T QVMVVDAEAYTYD
Sbjct: 189 FMYEPEIHINEDLMETLTLEEKREWVDSSPTRVFEIDPVTQQVMVVDAEAYTYD 242