BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00020150
         (1600 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEK21856.2| ribulose-1,5-bisphosphate carboxylase/oxygenase l...   129   2e-27
gb|AEK21859.1| ribulose-1,5-bisphosphate carboxylase/oxygenase l...   129   2e-27
gb|AEK21845.1| ribulose-1,5-bisphosphate carboxylase/oxygenase l...   129   2e-27
gb|ACS73577.1| ribulose-1,5-bisphosphate carboxylase/oxygenase l...   129   2e-27
gb|AAY33020.1| ribulose-1,5-bisphosphate carboxylase/oxygenase l...   129   2e-27

>gb|AEK21856.2| ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit,
           partial [Coptis teeta] gi|354549680|gb|AEK21846.2|
           ribulose-1,5-bisphosphate carboxylase/oxygenase large
           subunit, partial [Coptis chinensis]
           gi|361073073|gb|AEW10542.1| ribulose-1,5-bisphosphate
           carboxylase/oxygenase large subunit [Coptis chinensis
           var. brevisepala] gi|361073075|gb|AEW10543.1|
           ribulose-1,5-bisphosphate carboxylase/oxygenase large
           subunit [Coptis omeiensis] gi|361073077|gb|AEW10544.1|
           ribulose-1,5-bisphosphate carboxylase/oxygenase large
           subunit [Coptis teeta]
          Length = 223

 Score =  129 bits (324), Expect = 2e-27
 Identities = 59/74 (79%), Positives = 63/74 (85%)
 Frame = +1

Query: 703 NYKLTYYTPQYTPKDTDTLAAFRVTPQPGVPLXXXXXXXXXXSSTGTWTTMWTDGLTNLD 882
           +YKLTYYTPQYTPKDTDTLAAFRVTPQPGVP           SSTGTWTT+WTDGLT+LD
Sbjct: 1   DYKLTYYTPQYTPKDTDTLAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLD 60

Query: 883 RYKGQCYDIEPVAG 924
           RYKG+CYDIEPVAG
Sbjct: 61  RYKGRCYDIEPVAG 74


>gb|AEK21859.1| ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
           [Coptis teeta]
          Length = 202

 Score =  129 bits (324), Expect = 2e-27
 Identities = 59/74 (79%), Positives = 63/74 (85%)
 Frame = +1

Query: 703 NYKLTYYTPQYTPKDTDTLAAFRVTPQPGVPLXXXXXXXXXXSSTGTWTTMWTDGLTNLD 882
           +YKLTYYTPQYTPKDTDTLAAFRVTPQPGVP           SSTGTWTT+WTDGLT+LD
Sbjct: 1   DYKLTYYTPQYTPKDTDTLAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLD 60

Query: 883 RYKGQCYDIEPVAG 924
           RYKG+CYDIEPVAG
Sbjct: 61  RYKGRCYDIEPVAG 74


>gb|AEK21845.1| ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
           [Coptis chinensis] gi|339897333|gb|AEK21847.1|
           ribulose-1,5-bisphosphate carboxylase/oxygenase large
           subunit [Coptis chinensis var. brevisepala]
           gi|339897335|gb|AEK21848.1| ribulose-1,5-bisphosphate
           carboxylase/oxygenase large subunit [Coptis deltoidea]
           gi|339897337|gb|AEK21849.1| ribulose-1,5-bisphosphate
           carboxylase/oxygenase large subunit [Coptis deltoidea]
           gi|339897339|gb|AEK21850.1| ribulose-1,5-bisphosphate
           carboxylase/oxygenase large subunit [Coptis deltoidea]
           gi|339897341|gb|AEK21851.1| ribulose-1,5-bisphosphate
           carboxylase/oxygenase large subunit [Coptis deltoidea]
           gi|339897343|gb|AEK21852.1| ribulose-1,5-bisphosphate
           carboxylase/oxygenase large subunit [Coptis deltoidea]
           gi|339897345|gb|AEK21853.1| ribulose-1,5-bisphosphate
           carboxylase/oxygenase large subunit [Coptis omeiensis]
           gi|339897347|gb|AEK21854.1| ribulose-1,5-bisphosphate
           carboxylase/oxygenase large subunit [Coptis omeiensis]
           gi|339897349|gb|AEK21855.1| ribulose-1,5-bisphosphate
           carboxylase/oxygenase large subunit [Coptis omeiensis]
           gi|339897355|gb|AEK21857.1| ribulose-1,5-bisphosphate
           carboxylase/oxygenase large subunit [Coptis teeta]
           gi|339897357|gb|AEK21858.1| ribulose-1,5-bisphosphate
           carboxylase/oxygenase large subunit [Coptis teeta]
          Length = 205

 Score =  129 bits (324), Expect = 2e-27
 Identities = 59/74 (79%), Positives = 63/74 (85%)
 Frame = +1

Query: 703 NYKLTYYTPQYTPKDTDTLAAFRVTPQPGVPLXXXXXXXXXXSSTGTWTTMWTDGLTNLD 882
           +YKLTYYTPQYTPKDTDTLAAFRVTPQPGVP           SSTGTWTT+WTDGLT+LD
Sbjct: 4   DYKLTYYTPQYTPKDTDTLAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLD 63

Query: 883 RYKGQCYDIEPVAG 924
           RYKG+CYDIEPVAG
Sbjct: 64  RYKGRCYDIEPVAG 77


>gb|ACS73577.1| ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
           [Coptis chinensis]
          Length = 463

 Score =  129 bits (324), Expect = 2e-27
 Identities = 59/74 (79%), Positives = 63/74 (85%)
 Frame = +1

Query: 703 NYKLTYYTPQYTPKDTDTLAAFRVTPQPGVPLXXXXXXXXXXSSTGTWTTMWTDGLTNLD 882
           +YKLTYYTPQYTPKDTDTLAAFRVTPQPGVP           SSTGTWTT+WTDGLT+LD
Sbjct: 7   DYKLTYYTPQYTPKDTDTLAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLD 66

Query: 883 RYKGQCYDIEPVAG 924
           RYKG+CYDIEPVAG
Sbjct: 67  RYKGRCYDIEPVAG 80


>gb|AAY33020.1| ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
           [Coptis chinensis]
          Length = 463

 Score =  129 bits (324), Expect = 2e-27
 Identities = 59/74 (79%), Positives = 63/74 (85%)
 Frame = +1

Query: 703 NYKLTYYTPQYTPKDTDTLAAFRVTPQPGVPLXXXXXXXXXXSSTGTWTTMWTDGLTNLD 882
           +YKLTYYTPQYTPKDTDTLAAFRVTPQPGVP           SSTGTWTT+WTDGLT+LD
Sbjct: 7   DYKLTYYTPQYTPKDTDTLAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLD 66

Query: 883 RYKGQCYDIEPVAG 924
           RYKG+CYDIEPVAG
Sbjct: 67  RYKGRCYDIEPVAG 80