BLASTX nr result
ID: Coptis25_contig00020126
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00020126 (425 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002266665.2| PREDICTED: LOW QUALITY PROTEIN: DNA repair p... 94 3e-22 ref|XP_002300148.1| predicted protein [Populus trichocarpa] gi|2... 94 3e-22 ref|XP_003552170.1| PREDICTED: DNA repair protein RAD50-like [Gl... 93 2e-21 ref|XP_004133980.1| PREDICTED: DNA repair protein RAD50-like [Cu... 94 2e-21 ref|XP_004166115.1| PREDICTED: DNA repair protein RAD50-like, pa... 94 2e-21 >ref|XP_002266665.2| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein RAD50-like [Vitis vinifera] Length = 1316 Score = 94.4 bits (233), Expect(2) = 3e-22 Identities = 46/47 (97%), Positives = 47/47 (100%) Frame = -1 Query: 425 EPTTNLDGPNAESLAAALLRIMDDRKGQENFQLIVITHDERFAQLIG 285 EPTTNLDGPNAESLAAALLRIM+DRKGQENFQLIVITHDERFAQLIG Sbjct: 1242 EPTTNLDGPNAESLAAALLRIMEDRKGQENFQLIVITHDERFAQLIG 1288 Score = 35.4 bits (80), Expect(2) = 3e-22 Identities = 16/18 (88%), Positives = 17/18 (94%) Frame = -3 Query: 189 VAKNDRQHSIIEAQEIFD 136 VAK+D QHSIIEAQEIFD Sbjct: 1299 VAKDDHQHSIIEAQEIFD 1316 >ref|XP_002300148.1| predicted protein [Populus trichocarpa] gi|222847406|gb|EEE84953.1| predicted protein [Populus trichocarpa] Length = 1316 Score = 94.4 bits (233), Expect(2) = 3e-22 Identities = 46/47 (97%), Positives = 47/47 (100%) Frame = -1 Query: 425 EPTTNLDGPNAESLAAALLRIMDDRKGQENFQLIVITHDERFAQLIG 285 EPTTNLDGPNAESLAAALLRIM+DRKGQENFQLIVITHDERFAQLIG Sbjct: 1242 EPTTNLDGPNAESLAAALLRIMEDRKGQENFQLIVITHDERFAQLIG 1288 Score = 35.4 bits (80), Expect(2) = 3e-22 Identities = 16/18 (88%), Positives = 17/18 (94%) Frame = -3 Query: 189 VAKNDRQHSIIEAQEIFD 136 VAK+D QHSIIEAQEIFD Sbjct: 1299 VAKDDHQHSIIEAQEIFD 1316 >ref|XP_003552170.1| PREDICTED: DNA repair protein RAD50-like [Glycine max] Length = 1316 Score = 93.2 bits (230), Expect(2) = 2e-21 Identities = 45/47 (95%), Positives = 47/47 (100%) Frame = -1 Query: 425 EPTTNLDGPNAESLAAALLRIMDDRKGQENFQLIVITHDERFAQLIG 285 EPTTNLDGPNAESLAAAL+RIM+DRKGQENFQLIVITHDERFAQLIG Sbjct: 1242 EPTTNLDGPNAESLAAALVRIMEDRKGQENFQLIVITHDERFAQLIG 1288 Score = 34.3 bits (77), Expect(2) = 2e-21 Identities = 15/18 (83%), Positives = 17/18 (94%) Frame = -3 Query: 189 VAKNDRQHSIIEAQEIFD 136 VAK+D QHSIIE+QEIFD Sbjct: 1299 VAKDDHQHSIIESQEIFD 1316 >ref|XP_004133980.1| PREDICTED: DNA repair protein RAD50-like [Cucumis sativus] Length = 1316 Score = 94.4 bits (233), Expect(2) = 2e-21 Identities = 46/47 (97%), Positives = 47/47 (100%) Frame = -1 Query: 425 EPTTNLDGPNAESLAAALLRIMDDRKGQENFQLIVITHDERFAQLIG 285 EPTTNLDGPNAESLAAALLRIM+DRKGQENFQLIVITHDERFAQLIG Sbjct: 1242 EPTTNLDGPNAESLAAALLRIMEDRKGQENFQLIVITHDERFAQLIG 1288 Score = 32.7 bits (73), Expect(2) = 2e-21 Identities = 14/18 (77%), Positives = 16/18 (88%) Frame = -3 Query: 189 VAKNDRQHSIIEAQEIFD 136 V K+D QHSIIE+QEIFD Sbjct: 1299 VTKDDHQHSIIESQEIFD 1316 >ref|XP_004166115.1| PREDICTED: DNA repair protein RAD50-like, partial [Cucumis sativus] Length = 1088 Score = 94.4 bits (233), Expect(2) = 2e-21 Identities = 46/47 (97%), Positives = 47/47 (100%) Frame = -1 Query: 425 EPTTNLDGPNAESLAAALLRIMDDRKGQENFQLIVITHDERFAQLIG 285 EPTTNLDGPNAESLAAALLRIM+DRKGQENFQLIVITHDERFAQLIG Sbjct: 1014 EPTTNLDGPNAESLAAALLRIMEDRKGQENFQLIVITHDERFAQLIG 1060 Score = 32.7 bits (73), Expect(2) = 2e-21 Identities = 14/18 (77%), Positives = 16/18 (88%) Frame = -3 Query: 189 VAKNDRQHSIIEAQEIFD 136 V K+D QHSIIE+QEIFD Sbjct: 1071 VTKDDHQHSIIESQEIFD 1088