BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00020108
         (1012 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAB10338.1| hypothetical protein [Arabidopsis thaliana] gi|7...    81   4e-13
gb|AAD37019.2| putative non-LTR retrolelement reverse transcript...    81   5e-13
dbj|BAB01940.1| non-LTR retrolelement reverse transcriptase-like...    80   1e-12
ref|NP_178215.1| zinc ion binding / nucleic acid binding [Arabid...    79   1e-12
gb|ABW81177.1| gag non-LTR retrotransposase [Arabidopsis cebenne...    74   7e-11

>emb|CAB10338.1| hypothetical protein [Arabidopsis thaliana]
           gi|7268308|emb|CAB78602.1| hypothetical protein
           [Arabidopsis thaliana]
          Length = 655

 Score = 81.3 bits (199), Expect = 4e-13
 Identities = 57/245 (23%), Positives = 101/245 (41%), Gaps = 1/245 (0%)
 Frame = +2

Query: 233 DGYPMISFASQDMTKAIACLKNTLIIKFFFKKPSIDEIRISVRQTWGLKSEVIINVIDSK 412
           DG P+I+   + +       K  +++K   +  +I+ +   +R  W     + +  +  +
Sbjct: 73  DGEPVITIEKEVLDAMNGLYKQCMLVKILGRHTTIEVLSRKLRDLWRPTGGMSVLDLPRQ 132

Query: 413 HILLKFADEEDVVKALARKNPHIEGCRYKISRWSHQFDPTQD-SALAPVWVEFYDLPYHL 589
             +++F  EED + AL      + G    +  WS +F+P +D     PVWV   +LP   
Sbjct: 133 FFMVRFEVEEDYMMALTGGPWRVLGSILMVQAWSPEFNPLRDVIETTPVWVRVANLPVTF 192

Query: 590 FNPGMLIPIASMIGKYLTIDQATLTMSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLV 769
           ++  +L+ IA+ +GK + +D  TL                                    
Sbjct: 193 YHNEILLGIAAGLGKPIKVDLTTLRKERGR-----------------------------F 223

Query: 770 ARICVEIDLSKPLPSKLKITDPIYMDFWQEVVYDKLPRYCTYCSLQGHNASDCRKLNPNG 949
           AR+CVE++L  PL   L +    Y      V Y+ L   C+ C + GH  ++C    P G
Sbjct: 224 ARVCVEVNLKNPLKGTLVVNGERYF-----VSYEGLQTICSLCGIYGHTVNNC----PMG 274

Query: 950 SATRG 964
             T+G
Sbjct: 275 RTTQG 279


>gb|AAD37019.2| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 855

 Score = 80.9 bits (198), Expect = 5e-13
 Identities = 52/233 (22%), Positives = 97/233 (41%), Gaps = 1/233 (0%)
 Frame = +2

Query: 233 DGYPMISFASQDMTKAIACLKNTLIIKFFFKKPSIDEIRISVRQTWGLKSEVIINVIDSK 412
           DG  +I+   + +    +  K  +++K   +  SI  +   +R+ W  +  + +  +  +
Sbjct: 33  DGESVITIGREVLDVMNSMWKQCMVVKVLGRNISIANLNRRLREMWKPQGAMFVVDLPCQ 92

Query: 413 HILLKFADEEDVVKALARKNPHIEGCRYKISRWSHQFDPTQDS-ALAPVWVEFYDLPYHL 589
             +++F  E++ + AL        G    +  WS +FDP +D     P+WV   ++P  L
Sbjct: 93  FFMIRFEREDEYLSALTGGPWRAFGSYLLVQAWSPEFDPLRDEITTTPIWVRLMNIPLSL 152

Query: 590 FNPGMLIPIASMIGKYLTIDQATLTMSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLV 769
           ++  +L+ IA  +GK + +D  TL +                                  
Sbjct: 153 YHTSILMGIAGSLGKPVKVDMTTLHVERAR-----------------------------F 183

Query: 770 ARICVEIDLSKPLPSKLKITDPIYMDFWQEVVYDKLPRYCTYCSLQGHNASDC 928
           AR+C+E+DL+KPL   L +    Y      V Y+ L   C+ C + GH    C
Sbjct: 184 ARMCIEVDLAKPLKGTLLLNGERYF-----VSYEGLANICSRCGMYGHLIHTC 231


>dbj|BAB01940.1| non-LTR retrolelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 591

 Score = 79.7 bits (195), Expect = 1e-12
 Identities = 52/235 (22%), Positives = 94/235 (40%), Gaps = 1/235 (0%)
 Frame = +2

Query: 233 DGYPMISFASQDMTKAIACLKNTLIIKFFFKKPSIDEIRISVRQTWGLKSEVIINVIDSK 412
           DG P+I+   + +       K  + +K   +K S+  +   +R+ W     + +  +   
Sbjct: 58  DGEPVITIGQEVIDAMNGLWKQCMFVKVLGRKVSLAAVSHRLREMWKPSGAMYVLDLPRH 117

Query: 413 HILLKFADEEDVVKALARKNPHIEGCRYKISRWSHQFDPTQDSAL-APVWVEFYDLPYHL 589
             +++F  EE+ + AL        G    +  WS +F+P +D  +  P+WV   D+P   
Sbjct: 118 FFMVRFEKEEEFLTALTGGPWRAFGSCLLVKAWSPEFNPLKDEIVTTPIWVRIADMPVSF 177

Query: 590 FNPGMLIPIASMIGKYLTIDQATLTMSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLV 769
           ++  +L+ +A  +G+ L +D   L                                    
Sbjct: 178 YHKSILMSVAQGLGRPLKVDLTMLHFERGR-----------------------------F 208

Query: 770 ARICVEIDLSKPLPSKLKITDPIYMDFWQEVVYDKLPRYCTYCSLQGHNASDCRK 934
           AR+CVE+DL +PL   L +    Y      V Y+ L   C+ C + GH   +C K
Sbjct: 209 ARVCVEVDLKRPLQGALLVNGDRYY-----VAYEGLTNICSKCGIYGHLVHNCPK 258


>ref|NP_178215.1| zinc ion binding / nucleic acid binding [Arabidopsis thaliana]
           gi|6598620|gb|AAF18653.1| hypothetical protein
           [Arabidopsis thaliana] gi|330250297|gb|AEC05391.1| zinc
           ion binding / nucleic acid binding protein [Arabidopsis
           thaliana]
          Length = 515

 Score = 79.3 bits (194), Expect = 1e-12
 Identities = 52/233 (22%), Positives = 97/233 (41%), Gaps = 1/233 (0%)
 Frame = +2

Query: 233 DGYPMISFASQDMTKAIACLKNTLIIKFFFKKPSIDEIRISVRQTWGLKSEVIINVIDSK 412
           D  P+I+   + +       K  +I+K    +  I  +   +R+ W     + +  +  +
Sbjct: 58  DEEPVITIGEEVLEAMNGLWKKCMIVKVLGSQIPISVLNRKLRELWKPSGVMTVMDLPRQ 117

Query: 413 HILLKFADEEDVVKALARKNPHIEGCRYKISRWSHQFDPTQDSAL-APVWVEFYDLPYHL 589
             +++F  EE+ + AL      + G    +  WS +FDP +D  +  PVWV   ++PY+ 
Sbjct: 118 FFMIRFELEEEYMAALTGGPWRVLGNYLLVQDWSSRFDPLRDDIVTTPVWVRLSNIPYNY 177

Query: 590 FNPGMLIPIASMIGKYLTIDQATLTMSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLV 769
           ++  +L+ IA  +G+ L +D  T+                                    
Sbjct: 178 YHRCLLMEIARGLGRPLKVDMNTINFDKGR-----------------------------F 208

Query: 770 ARICVEIDLSKPLPSKLKITDPIYMDFWQEVVYDKLPRYCTYCSLQGHNASDC 928
           AR+C+E++L+KPL   + I    Y      V Y+ L + C+ C + GH    C
Sbjct: 209 ARVCIEVNLAKPLKGTVLINGDRYF-----VAYEGLSKICSSCGIYGHLVHSC 256


>gb|ABW81177.1| gag non-LTR retrotransposase [Arabidopsis cebennensis]
          Length = 496

 Score = 73.6 bits (179), Expect = 7e-11
 Identities = 52/237 (21%), Positives = 94/237 (39%), Gaps = 1/237 (0%)
 Frame = +2

Query: 233 DGYPMISFASQDMTKAIACLKNTLIIKFFFKKPSIDEIRISVRQTWGLKSEVIINVIDSK 412
           DG P+I+   + +       K  +I+K   +  S+  +   +R+ W    E+ +  +  +
Sbjct: 52  DGEPVITVGREVLDAMSGLWKKCIIVKVLGRNVSVSVLSRKLRELWKPVGEMSVMDLPRQ 111

Query: 413 HILLKFADEEDVVKALARKNPHIEGCRYKISRWSHQFDPTQDS-ALAPVWVEFYDLPYHL 589
             +++FA EE  + AL      + G    +  W   FDP +D     PVW+   +LP   
Sbjct: 112 FFMIRFASEE-YMGALTGGPQRVFGSYLLLQAWDPDFDPLRDEITTTPVWIRLSNLPVTF 170

Query: 590 FNPGMLIPIASMIGKYLTIDQATLTMSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLV 769
           ++  +L+ IA  +G  + +D  T+                                    
Sbjct: 171 YHKTILMGIAKGLGHPVKVDLITIRFDRGR-----------------------------F 201

Query: 770 ARICVEIDLSKPLPSKLKITDPIYMDFWQEVVYDKLPRYCTYCSLQGHNASDCRKLN 940
           AR+CVE++L +PL   + +    Y      V Y+ L   C+ C + GH    C + N
Sbjct: 202 ARVCVEVNLKRPLKGTVMVNGRRYY-----VSYEGLNAICSKCGMYGHLVHTCSQAN 253