BLASTX nr result

ID: Coptis25_contig00020062 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00020062
         (718 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABK24693.1| unknown [Picea sitchensis]                             256   4e-66
ref|XP_004147161.1| PREDICTED: heterogeneous nuclear ribonucleop...   240   2e-61
ref|XP_004173706.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneou...   240   2e-61
ref|XP_004151998.1| PREDICTED: DAZ-associated protein 1-like [Cu...   240   2e-61
ref|XP_002300356.1| predicted protein [Populus trichocarpa] gi|2...   240   2e-61

>gb|ABK24693.1| unknown [Picea sitchensis]
          Length = 476

 Score =  256 bits (653), Expect = 4e-66
 Identities = 133/229 (58%), Positives = 161/229 (70%)
 Frame = +3

Query: 30  MDSDQGKLFVGGISFETKEETLRDHFSKYGEVIDTVIMRDRVTSRPRGFGFVVFADPSVV 209
           MDSD  K+F+GGIS+ET EE LRD+FSKYGEV+ TVIM+DR+T R RGFGFVVF+DPS+V
Sbjct: 1   MDSDHCKIFIGGISWETSEERLRDYFSKYGEVVQTVIMKDRLTGRARGFGFVVFSDPSIV 60

Query: 210 DQALEENHVICSRTVEVKKAVPRGEQHQHYHNSNQEQHSRGFGRKXXXXXXXXXTQFRSK 389
           D AL+E H I  R VE KKAVPR EQ     NS     S+G+G              R+K
Sbjct: 61  DIALQEKHTIDGRAVEAKKAVPRSEQQNTRTNSYNNNDSQGYG----------GGSVRTK 110

Query: 390 KIFVGGLSASVTEEEFRGYFEKFGRITDVVVMYDSTTHRPRGFGFITFDSEEAVESVMQN 569
           KIFVGGL A++TEE+F+ YF++FG ITDVVVMYD  T RPRGFGFI+FDSE+AVESV+Q 
Sbjct: 111 KIFVGGLPANLTEEDFKNYFQQFGNITDVVVMYDHNTQRPRGFGFISFDSEDAVESVLQK 170

Query: 570 NFHELNNKSVEVKRAVPKDAATNSGRNHANSHNMRNGEGRGSIIGRYSG 716
           +FH+LN K VEVKRA+PKDA+  +    A  +   N     S  G Y G
Sbjct: 171 SFHQLNEKLVEVKRALPKDASPGAAGRGAGGYQGYNNS--TSNTGGYEG 217


>ref|XP_004147161.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like [Cucumis
           sativus]
          Length = 462

 Score =  240 bits (613), Expect = 2e-61
 Identities = 124/225 (55%), Positives = 154/225 (68%)
 Frame = +3

Query: 30  MDSDQGKLFVGGISFETKEETLRDHFSKYGEVIDTVIMRDRVTSRPRGFGFVVFADPSVV 209
           MDSDQGKLF+GGIS+ET E+ L+D+FS YGEV+ TV+MRD++TSRPRGFGFVVF+DPSV+
Sbjct: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60

Query: 210 DQALEENHVICSRTVEVKKAVPRGEQHQHYHNSNQEQHSRGFGRKXXXXXXXXXTQFRSK 389
           D+ L++ H I  +TVE K+A+ R EQ      SN    + G                R+K
Sbjct: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNGRNSG---------GSGGGNMRTK 111

Query: 390 KIFVGGLSASVTEEEFRGYFEKFGRITDVVVMYDSTTHRPRGFGFITFDSEEAVESVMQN 569
           KIFVGGL  ++TEE F+ YFE +G +TDVVVMYD  T RPRGFGFI+FD+EEAV+ V+  
Sbjct: 112 KIFVGGLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHK 171

Query: 570 NFHELNNKSVEVKRAVPKDAATNSGRNHANSHNMRNGEGRGSIIG 704
            FH+LN K VEVKRA+PKDA  N G   A    M  G G G   G
Sbjct: 172 TFHDLNGKQVEVKRALPKDA--NPG---AGGRTMSGGAGSGGYQG 211


>ref|XP_004173706.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
           ribonucleoprotein D-like [Cucumis sativus]
          Length = 462

 Score =  240 bits (612), Expect = 2e-61
 Identities = 124/225 (55%), Positives = 154/225 (68%)
 Frame = +3

Query: 30  MDSDQGKLFVGGISFETKEETLRDHFSKYGEVIDTVIMRDRVTSRPRGFGFVVFADPSVV 209
           MDSDQGKLF+GGIS+ET E+ L+D+FS YGEV+ TV+MRD++TSRPRGFGFVVF+DPSV+
Sbjct: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60

Query: 210 DQALEENHVICSRTVEVKKAVPRGEQHQHYHNSNQEQHSRGFGRKXXXXXXXXXTQFRSK 389
           D+ L++ H I  +TVE K+A+ R EQ      SN    + G                R+K
Sbjct: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNGRNSG---------GSGGGNMRTK 111

Query: 390 KIFVGGLSASVTEEEFRGYFEKFGRITDVVVMYDSTTHRPRGFGFITFDSEEAVESVMQN 569
           K FVGGL  ++TEE F+ YFE +G +TDVVVMYD  T RPRGFGFI+FD+EEAV+ V+  
Sbjct: 112 KXFVGGLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHK 171

Query: 570 NFHELNNKSVEVKRAVPKDAATNSGRNHANSHNMRNGEGRGSIIG 704
            FH+LN K VEVKRA+PKDA  N G   A S  M  G G G   G
Sbjct: 172 TFHDLNGKQVEVKRALPKDA--NPG---AGSRTMSGGAGSGGYQG 211


>ref|XP_004151998.1| PREDICTED: DAZ-associated protein 1-like [Cucumis sativus]
           gi|449509419|ref|XP_004163583.1| PREDICTED:
           DAZ-associated protein 1-like [Cucumis sativus]
          Length = 436

 Score =  240 bits (612), Expect = 2e-61
 Identities = 123/231 (53%), Positives = 159/231 (68%), Gaps = 2/231 (0%)
 Frame = +3

Query: 30  MDSDQGKLFVGGISFETKEETLRDHFSKYGEVIDTVIMRDRVTSRPRGFGFVVFADPSVV 209
           MDSD+GKLF+GGI+++T EE LRD+FS++GEVI  VIMRD+ T RPRGFGFVVF+DPS++
Sbjct: 1   MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSLL 60

Query: 210 DQALEENHVICSRTVEVKKAVPRGEQHQHYHN--SNQEQHSRGFGRKXXXXXXXXXTQFR 383
           DQ L++ H I  R VE K+A+ R EQ     +  +N  + S G G             FR
Sbjct: 61  DQVLQDKHTIDGRQVEAKRALSREEQQTSTRSGINNSGRSSGGSG------------YFR 108

Query: 384 SKKIFVGGLSASVTEEEFRGYFEKFGRITDVVVMYDSTTHRPRGFGFITFDSEEAVESVM 563
           +KKIFVGGL +++TE+ FR YFE +G++TDVV+MYD  T RPRGFGFITFD+E+AV+ V+
Sbjct: 109 TKKIFVGGLPSALTEDGFRQYFESYGQVTDVVIMYDQNTQRPRGFGFITFDNEDAVDRVL 168

Query: 564 QNNFHELNNKSVEVKRAVPKDAATNSGRNHANSHNMRNGEGRGSIIGRYSG 716
             +FHELN K VEVKRA+PKDA   SG      +   +G    S  GR  G
Sbjct: 169 YKSFHELNGKLVEVKRALPKDANPGSGGRAGYQNYGASGTNSNSFDGRSDG 219


>ref|XP_002300356.1| predicted protein [Populus trichocarpa] gi|222847614|gb|EEE85161.1|
           predicted protein [Populus trichocarpa]
          Length = 478

 Score =  240 bits (612), Expect = 2e-61
 Identities = 123/213 (57%), Positives = 153/213 (71%)
 Frame = +3

Query: 30  MDSDQGKLFVGGISFETKEETLRDHFSKYGEVIDTVIMRDRVTSRPRGFGFVVFADPSVV 209
           M+SD GKLF+GGIS++T EE L+++FSKYGEV++ VIMRDRVT R RGFGFVVFADP V 
Sbjct: 1   MESDLGKLFIGGISWDTDEERLKEYFSKYGEVVEAVIMRDRVTGRARGFGFVVFADPIVA 60

Query: 210 DQALEENHVICSRTVEVKKAVPRGEQHQHYHNSNQEQHSRGFGRKXXXXXXXXXTQFRSK 389
           ++ + E HV+  RTVE KKAVPR +QH    N++    S G G              R+K
Sbjct: 61  ERVIMEKHVVDGRTVEAKKAVPRDDQHILSRNTSSIHGSPGPG--------------RTK 106

Query: 390 KIFVGGLSASVTEEEFRGYFEKFGRITDVVVMYDSTTHRPRGFGFITFDSEEAVESVMQN 569
           KIFVGGL+++VTE +F+ YFE+FG ITDVVVMYD  T RPRGFGFIT+DSEEAV+ V+  
Sbjct: 107 KIFVGGLASTVTENDFKKYFEQFGIITDVVVMYDHNTLRPRGFGFITYDSEEAVDRVLHK 166

Query: 570 NFHELNNKSVEVKRAVPKDAATNSGRNHANSHN 668
            FHELN K VEVKRAVPK+ +    R+    +N
Sbjct: 167 TFHELNGKMVEVKRAVPKELSPGPSRSPLMGYN 199


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