BLASTX nr result
ID: Coptis25_contig00020037
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00020037
(610 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002510805.1| conserved hypothetical protein [Ricinus comm... 134 6e-57
ref|XP_003548199.1| PREDICTED: flap endonuclease GEN-like 2-like... 127 3e-51
ref|XP_004140848.1| PREDICTED: flap endonuclease GEN-like 2-like... 126 2e-49
ref|NP_001060762.1| Os08g0101600 [Oryza sativa Japonica Group] g... 120 2e-47
gb|EEC82759.1| hypothetical protein OsI_27479 [Oryza sativa Indi... 120 2e-47
>ref|XP_002510805.1| conserved hypothetical protein [Ricinus communis]
gi|223549920|gb|EEF51407.1| conserved hypothetical
protein [Ricinus communis]
Length = 586
Score = 134 bits (336), Expect(3) = 6e-57
Identities = 64/99 (64%), Positives = 81/99 (81%)
Frame = -3
Query: 302 NIDEKDMQKDHQFIKVIDAYLKPKCHSPDSEMVHRVLVHHPFRRSELQKLCSQFFGWPSE 123
N +K ++ +QF++VIDAYLKPKCHS DS+ V+RVL PF+ ++LQ+LC++FFGW SE
Sbjct: 275 NGSDKISERQNQFLQVIDAYLKPKCHSADSDTVYRVLAQPPFQCAKLQQLCARFFGWSSE 334
Query: 122 KTDEYILPKISERDLRRFAILRSTSSEFGVQLPLQEIPV 6
TDEYILPKI+ERDLRRF+ LRSTSS+ GV L L EIPV
Sbjct: 335 ITDEYILPKIAERDLRRFSNLRSTSSKLGVNLTLHEIPV 373
Score = 79.3 bits (194), Expect(3) = 6e-57
Identities = 35/54 (64%), Positives = 45/54 (83%)
Frame = -2
Query: 504 GSDYSHGVHGFGPETACQIVRSLGDHNVLRQVASEGFAFVKKTKGLKKQGEVRN 343
GSDYS GV G GPE+ACQIV+S+GDHNVL+Q+AS G +F KKTK KKQ ++++
Sbjct: 214 GSDYSQGVRGLGPESACQIVKSVGDHNVLQQIASGGLSFAKKTKASKKQTQLKS 267
Score = 54.7 bits (130), Expect(3) = 6e-57
Identities = 23/28 (82%), Positives = 27/28 (96%)
Frame = -1
Query: 610 ESLCDGCFTADSDVFLFGAKTIYRDIDL 527
ESLCDGCF++DSDVFLFGA+T+YRDI L
Sbjct: 154 ESLCDGCFSSDSDVFLFGARTVYRDICL 181
>ref|XP_003548199.1| PREDICTED: flap endonuclease GEN-like 2-like [Glycine max]
Length = 588
Score = 127 bits (319), Expect(3) = 3e-51
Identities = 57/96 (59%), Positives = 76/96 (79%)
Frame = -3
Query: 293 EKDMQKDHQFIKVIDAYLKPKCHSPDSEMVHRVLVHHPFRRSELQKLCSQFFGWPSEKTD 114
+ D++ D ++VI+AY+KPKCH DS++VH+ L +PF+R++LQ++C FF WPSEKTD
Sbjct: 279 KNDLRPDDNILQVINAYMKPKCHQADSDIVHKALAQYPFQRTKLQQICVGFFEWPSEKTD 338
Query: 113 EYILPKISERDLRRFAILRSTSSEFGVQLPLQEIPV 6
YILP I+ER+LRRFA LR TSSE G+ LPL EIPV
Sbjct: 339 GYILPNIAERNLRRFANLRLTSSEVGLNLPLHEIPV 374
Score = 67.0 bits (162), Expect(3) = 3e-51
Identities = 29/46 (63%), Positives = 37/46 (80%)
Frame = -2
Query: 504 GSDYSHGVHGFGPETACQIVRSLGDHNVLRQVASEGFAFVKKTKGL 367
GSDY GVHG GPE+ACQIV+S+GD +L++ ASEG +VKK KG+
Sbjct: 215 GSDYYQGVHGLGPESACQIVKSIGDKYILKKFASEGLGWVKKRKGI 260
Score = 54.3 bits (129), Expect(3) = 3e-51
Identities = 22/28 (78%), Positives = 27/28 (96%)
Frame = -1
Query: 610 ESLCDGCFTADSDVFLFGAKTIYRDIDL 527
ESLCDGCF++DSD+FLFGA+T+YRDI L
Sbjct: 155 ESLCDGCFSSDSDIFLFGARTVYRDICL 182
>ref|XP_004140848.1| PREDICTED: flap endonuclease GEN-like 2-like [Cucumis sativus]
Length = 563
Score = 126 bits (317), Expect(3) = 2e-49
Identities = 61/94 (64%), Positives = 74/94 (78%)
Frame = -3
Query: 284 MQKDHQFIKVIDAYLKPKCHSPDSEMVHRVLVHHPFRRSELQKLCSQFFGWPSEKTDEYI 105
M K +F +VIDAYLKPKCHS DSE V RVL HPF+ +LQ++C++FF W EKTDE I
Sbjct: 272 MLKCDEFSEVIDAYLKPKCHSADSEAVTRVLDQHPFQHVKLQQICAEFFEWSPEKTDENI 331
Query: 104 LPKISERDLRRFAILRSTSSEFGVQLPLQEIPVT 3
LPKI+ERDLRRFA +RS +SE G +PLQEIPV+
Sbjct: 332 LPKIAERDLRRFANIRSRTSELGFNIPLQEIPVS 365
Score = 62.8 bits (151), Expect(3) = 2e-49
Identities = 28/50 (56%), Positives = 38/50 (76%)
Frame = -2
Query: 504 GSDYSHGVHGFGPETACQIVRSLGDHNVLRQVASEGFAFVKKTKGLKKQG 355
GSDYS GV+G G E+ACQ+V+++GD VL+++ SEG A KK + KKQG
Sbjct: 213 GSDYSQGVYGMGRESACQLVKAVGDGAVLQKITSEGLALAKKGENSKKQG 262
Score = 53.5 bits (127), Expect(3) = 2e-49
Identities = 23/32 (71%), Positives = 27/32 (84%)
Frame = -1
Query: 610 ESLCDGCFTADSDVFLFGAKTIYRDIDLDYTG 515
E LCDGCFT+DSD FLFGA+T+YRDI L +G
Sbjct: 153 ELLCDGCFTSDSDAFLFGARTVYRDICLGDSG 184
>ref|NP_001060762.1| Os08g0101600 [Oryza sativa Japonica Group]
gi|75162699|sp|Q8W5R1.1|GENL2_ORYSJ RecName: Full=Flap
endonuclease GEN-like 2; AltName: Full=OsSEND-1;
AltName: Full=Single-strand DNA endonuclease 1
gi|16923283|dbj|BAB72003.1| single-strand DNA
endonuclease-1 [Oryza sativa Japonica Group]
gi|113622731|dbj|BAF22676.1| Os08g0101600 [Oryza sativa
Japonica Group] gi|222639760|gb|EEE67892.1| hypothetical
protein OsJ_25722 [Oryza sativa Japonica Group]
Length = 641
Score = 120 bits (301), Expect(3) = 2e-47
Identities = 57/90 (63%), Positives = 69/90 (76%)
Frame = -3
Query: 275 DHQFIKVIDAYLKPKCHSPDSEMVHRVLVHHPFRRSELQKLCSQFFGWPSEKTDEYILPK 96
D QF VI+AYL+PKCHSPDSE V RV HPF R +LQK+C ++F W EKTD+YILPK
Sbjct: 285 DGQFRDVINAYLEPKCHSPDSEAVQRVCGQHPFLRPQLQKICEEYFDWSPEKTDQYILPK 344
Query: 95 ISERDLRRFAILRSTSSEFGVQLPLQEIPV 6
I+ER+LRRF+ LRS SS G++ L EIPV
Sbjct: 345 IAERELRRFSDLRSASSALGIKPLLSEIPV 374
Score = 61.2 bits (147), Expect(3) = 2e-47
Identities = 27/52 (51%), Positives = 38/52 (73%)
Frame = -2
Query: 504 GSDYSHGVHGFGPETACQIVRSLGDHNVLRQVASEGFAFVKKTKGLKKQGEV 349
GSDYS+GV+GFGPETAC++V+S+GD+ +L Q+ S G +K KG +V
Sbjct: 215 GSDYSNGVNGFGPETACRLVKSVGDNLILDQILSNGVKATRKCKGKNSGNKV 266
Score = 53.9 bits (128), Expect(3) = 2e-47
Identities = 21/26 (80%), Positives = 25/26 (96%)
Frame = -1
Query: 610 ESLCDGCFTADSDVFLFGAKTIYRDI 533
ESLCDGCFT+DSD FLFGA+T+YRD+
Sbjct: 155 ESLCDGCFTSDSDAFLFGARTVYRDV 180
>gb|EEC82759.1| hypothetical protein OsI_27479 [Oryza sativa Indica Group]
Length = 632
Score = 120 bits (301), Expect(3) = 2e-47
Identities = 57/90 (63%), Positives = 69/90 (76%)
Frame = -3
Query: 275 DHQFIKVIDAYLKPKCHSPDSEMVHRVLVHHPFRRSELQKLCSQFFGWPSEKTDEYILPK 96
D QF VI+AYL+PKCHSPDSE V RV HPF R +LQK+C ++F W EKTD+YILPK
Sbjct: 276 DGQFRDVINAYLEPKCHSPDSEAVQRVCGQHPFLRPQLQKICEEYFDWSPEKTDQYILPK 335
Query: 95 ISERDLRRFAILRSTSSEFGVQLPLQEIPV 6
I+ER+LRRF+ LRS SS G++ L EIPV
Sbjct: 336 IAERELRRFSDLRSASSALGIKPLLSEIPV 365
Score = 61.2 bits (147), Expect(3) = 2e-47
Identities = 27/52 (51%), Positives = 38/52 (73%)
Frame = -2
Query: 504 GSDYSHGVHGFGPETACQIVRSLGDHNVLRQVASEGFAFVKKTKGLKKQGEV 349
GSDYS+GV+GFGPETAC++V+S+GD+ +L Q+ S G +K KG +V
Sbjct: 206 GSDYSNGVNGFGPETACRLVKSVGDNLILDQILSNGVKATRKCKGKNSGNKV 257
Score = 53.9 bits (128), Expect(3) = 2e-47
Identities = 21/26 (80%), Positives = 25/26 (96%)
Frame = -1
Query: 610 ESLCDGCFTADSDVFLFGAKTIYRDI 533
ESLCDGCFT+DSD FLFGA+T+YRD+
Sbjct: 146 ESLCDGCFTSDSDAFLFGARTVYRDV 171