BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00020016
         (1318 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280389.1| PREDICTED: SWI/SNF complex subunit SWI3A [Vi...   300   4e-79
emb|CAN80839.1| hypothetical protein VITISV_043833 [Vitis vinifera]   297   5e-78
ref|XP_002322279.1| chromatin remodeling complex subunit [Populu...   247   4e-63
ref|XP_003602787.1| SWI/SNF complex subunit SMARCC2 [Medicago tr...   237   6e-60
ref|XP_002511138.1| DNA binding protein, putative [Ricinus commu...   229   1e-57

>ref|XP_002280389.1| PREDICTED: SWI/SNF complex subunit SWI3A [Vitis vinifera]
            gi|297734457|emb|CBI15704.3| unnamed protein product
            [Vitis vinifera]
          Length = 563

 Score =  300 bits (769), Expect = 4e-79
 Identities = 173/385 (44%), Positives = 224/385 (58%), Gaps = 3/385 (0%)
 Frame = +2

Query: 2    PLASCNDVFGGGLK--GLSCVKCGEVFASKSGEAN-KKENAVTCLKCLKNGNIEESKSEN 172
            PLAS +DVF    K  GL C  CG+     SG  N  K + V C+KC KNGN  E++S +
Sbjct: 173  PLASYSDVFSDLTKEKGLVCGNCGD--NCDSGHYNCLKGSPVICVKCFKNGNYGENRSVD 230

Query: 173  DVNFKDSKDGSDNCEVDSWTETEIXXXXXXXXXHGDDWDLVARDVKTKKRSDCISKLIQL 352
            D  F D  +   N     WTE E          HGDDW+LV ++V+TK + DCISKLI+L
Sbjct: 231  DFKFNDCNENRGNRGA-VWTEAETLLLLESVLKHGDDWELVVQNVQTKTKLDCISKLIEL 289

Query: 353  PFGELMLNTTNGKGDGRKSNSSTINIAQGQSTQIELQDLIKEKDLCHYQVSESDQNGDGE 532
            PFGELML ++ GK      N+S+I   Q   T +E Q+ IK       Q++ES+QNGD E
Sbjct: 290  PFGELMLGSSLGKSRASNDNTSSIKPVQ---TSLESQENIKNGGQGDEQINESEQNGDAE 346

Query: 533  TEEPPLKRRCIDRLADASDSLMKQVADLSTVVSPHVXXXXXXXXXXXLCEENPYARVYFE 712
             + PPLKR+CI  L+DA  SLM+QVA +ST+V PH+           LC+ENP  +  F+
Sbjct: 347  NQGPPLKRKCITSLSDAGISLMRQVAVISTMVGPHISAAAADAAVAALCDENPCVKDIFD 406

Query: 713  DVGDDITNVLDSPTSSSKATSLLNVEDSEMVERHAQSESQVGDAEKNPIALTLRXXXXXX 892
               D++T  L SP  ++K    L VEDSE+ ER   SE Q   +EKN I L L+      
Sbjct: 407  GAEDNVTEELGSPIRNNKLERSLMVEDSEINERPILSEIQKTSSEKNAIPLPLQMRAAIA 466

Query: 893  XXXXXXXXXXXXXXDQEDREIEHLVATVIETQLRKIQCKIKHFEELQLIMENEYTQIQEL 1072
                          DQE REIEHLVAT+IETQ++K+ CKI+HFE+L+LIME EYT ++EL
Sbjct: 467  TALGAAAANAKSLADQEHREIEHLVATIIETQMKKLHCKIQHFEDLELIMEKEYTHLKEL 526

Query: 1073 KESXXXXXXXXXXXXFSAGIARWRD 1147
            KES            F+AGI+RWRD
Sbjct: 527  KESIIAERIDILQRVFNAGISRWRD 551


>emb|CAN80839.1| hypothetical protein VITISV_043833 [Vitis vinifera]
          Length = 563

 Score =  297 bits (760), Expect = 5e-78
 Identities = 172/385 (44%), Positives = 222/385 (57%), Gaps = 3/385 (0%)
 Frame = +2

Query: 2    PLASCNDVFGGGLK--GLSCVKCGEVFASKSGEAN-KKENAVTCLKCLKNGNIEESKSEN 172
            PLAS +DVF    K  GL C  CG+     SG  N  K + V C+KC KNGN  E++S +
Sbjct: 173  PLASYSDVFSDLTKEKGLVCGNCGD--NCDSGHYNCLKGSPVICVKCFKNGNYGENRSVD 230

Query: 173  DVNFKDSKDGSDNCEVDSWTETEIXXXXXXXXXHGDDWDLVARDVKTKKRSDCISKLIQL 352
            D  F D  +   N     WTE E          HGDDW+LV ++V+TK + DCISKLI+L
Sbjct: 231  DFKFNDCNENRGNRGA-VWTEAETLLLLESVLKHGDDWELVVQNVQTKTKLDCISKLIEL 289

Query: 353  PFGELMLNTTNGKGDGRKSNSSTINIAQGQSTQIELQDLIKEKDLCHYQVSESDQNGDGE 532
            PFGELML ++ GK      N+S+I   Q   T +E Q+ IK       Q++ES+QNGD E
Sbjct: 290  PFGELMLGSSLGKSRASNDNTSSIKPVQ---TSLESQENIKNGGQGDEQINESEQNGDAE 346

Query: 533  TEEPPLKRRCIDRLADASDSLMKQVADLSTVVSPHVXXXXXXXXXXXLCEENPYARVYFE 712
             + PPLKR+CI  L+DA  SLM QVA +ST+V PH+           LC+ENP  +  F+
Sbjct: 347  NQGPPLKRKCITSLSDAGISLMXQVAVISTMVGPHISAAAADAAVAALCDENPCVKDIFD 406

Query: 713  DVGDDITNVLDSPTSSSKATSLLNVEDSEMVERHAQSESQVGDAEKNPIALTLRXXXXXX 892
               D++T  L SP  ++     L VEDSE+ ER   SE Q   +EKN I L L+      
Sbjct: 407  GAEDNVTEELGSPIRNNXLERSLMVEDSEINERPILSEIQKTSSEKNAIPLPLQMRAAIA 466

Query: 893  XXXXXXXXXXXXXXDQEDREIEHLVATVIETQLRKIQCKIKHFEELQLIMENEYTQIQEL 1072
                          DQE REIEHLVAT+IETQ++K+ CKI+HFE+L+LIME EYT ++EL
Sbjct: 467  TALGAAAANAKSLADQEHREIEHLVATIIETQMKKLHCKIQHFEDLELIMEKEYTHLKEL 526

Query: 1073 KESXXXXXXXXXXXXFSAGIARWRD 1147
            KES            F+AGI+RWRD
Sbjct: 527  KESIIAERIDILQRVFNAGISRWRD 551


>ref|XP_002322279.1| chromatin remodeling complex subunit [Populus trichocarpa]
            gi|222869275|gb|EEF06406.1| chromatin remodeling complex
            subunit [Populus trichocarpa]
          Length = 570

 Score =  247 bits (631), Expect = 4e-63
 Identities = 150/386 (38%), Positives = 212/386 (54%), Gaps = 3/386 (0%)
 Frame = +2

Query: 2    PLASCNDVFG---GGLKGLSCVKCGEVFASKSGEANKKENAVTCLKCLKNGNIEESKSEN 172
            PLAS +DVFG   G  K + C  CG    S   E +K +  + C KC  +G   E+KS++
Sbjct: 176  PLASYSDVFGELVGKKKEVVCGNCGGSCDSGQYEHSKGDYLI-CQKCFNDGTYGENKSKD 234

Query: 173  DVNFKDSKDGSDNCEVDSWTETEIXXXXXXXXXHGDDWDLVARDVKTKKRSDCISKLIQL 352
            D   K S + + +     WTE E          HG+DWDLVA++VKTK + DCISKLI+L
Sbjct: 235  DFKLKVSAENNGS-NAAVWTEEETLRLLESVSRHGNDWDLVAQNVKTKTKLDCISKLIEL 293

Query: 353  PFGELMLNTTNGKGDGRKSNSSTINIAQGQSTQIELQDLIKEKDLCHYQVSESDQNGDGE 532
            PFG+L+L++T GKG+      ST N  Q  +   E QD  K +D  H Q++ +++ GD  
Sbjct: 294  PFGDLILSSTYGKGNSSGQIGSTNNSKQVPAAPSEHQDDTKHEDQLHEQMNANEEKGDVM 353

Query: 533  TEEPPLKRRCIDRLADASDSLMKQVADLSTVVSPHVXXXXXXXXXXXLCEENPYARVYFE 712
             + P LKRR I  ++DA  SLMKQVA +ST+V P +           LC+E    R  F+
Sbjct: 354  DDGPLLKRRRITSVSDAGGSLMKQVALISTMVGPDITAAAAEAAVAALCDETACPREIFD 413

Query: 713  DVGDDITNVLDSPTSSSKATSLLNVEDSEMVERHAQSESQVGDAEKNPIALTLRXXXXXX 892
               D  +N   SP+  SK+  +  V+ SE+ +   QS ++   A +N I L+LR      
Sbjct: 414  GEEDFPSNGFSSPSFHSKSKRVDEVDASEVKQTPTQSVNEEASAWQNDIPLSLRLRAAVA 473

Query: 893  XXXXXXXXXXXXXXDQEDREIEHLVATVIETQLRKIQCKIKHFEELQLIMENEYTQIQEL 1072
                          DQEDRE+E+L+AT++ETQL+K+  KIKHF++L+LIME EY ++ EL
Sbjct: 474  TTLGAAAAHAKLLADQEDREVENLMATIVETQLKKLHHKIKHFDDLELIMEKEYAELDEL 533

Query: 1073 KESXXXXXXXXXXXXFSAGIARWRDH 1150
             ES              AGI++ RDH
Sbjct: 534  TESLTEERIDVLQRAIRAGISKSRDH 559


>ref|XP_003602787.1| SWI/SNF complex subunit SMARCC2 [Medicago truncatula]
            gi|355491835|gb|AES73038.1| SWI/SNF complex subunit
            SMARCC2 [Medicago truncatula]
          Length = 540

 Score =  237 bits (604), Expect = 6e-60
 Identities = 154/390 (39%), Positives = 206/390 (52%), Gaps = 2/390 (0%)
 Frame = +2

Query: 2    PLASCNDVFGGGL--KGLSCVKCGEVFASKSGEANKKENAVTCLKCLKNGNIEESKSEND 175
            PLAS +DV+G  +  K ++C  CG+   S    + K +N + C KC KNGN  E +S  D
Sbjct: 172  PLASYSDVYGDLIRRKEVNCGNCGDKCGSGHYRSTK-DNFIICTKCFKNGNYGEKRSMED 230

Query: 176  VNFKDSKDGSDNCEVDSWTETEIXXXXXXXXXHGDDWDLVARDVKTKKRSDCISKLIQLP 355
                +S + S N     WTE E          HGDDW+LVA+ V+TK + +CISKLI+LP
Sbjct: 231  FKLNESSEISANHSA-VWTEGETLLLLESVLKHGDDWELVAQSVRTKTKLECISKLIELP 289

Query: 356  FGELMLNTTNGKGDGRKSNSSTINIAQGQSTQIELQDLIKEKDLCHYQVSESDQNGDGET 535
            FGELML +     +         N  Q Q +  + Q+    +D      +E +QNGD   
Sbjct: 290  FGELMLASVRRNDNSNSVTGIVNNRNQVQVSSSDHQETSMTQDQSSEPKNEVEQNGDAVN 349

Query: 536  EEPPLKRRCIDRLADASDSLMKQVADLSTVVSPHVXXXXXXXXXXXLCEENPYARVYFED 715
            E P  KRR +  L+D+S SLMKQV  LSTVV PHV           LC+EN   R  F D
Sbjct: 350  ENPS-KRRRVSTLSDSSSSLMKQVGLLSTVVDPHVTAAAASAAITALCDENSLPRDIF-D 407

Query: 716  VGDDITNVLDSPTSSSKATSLLNVEDSEMVERHAQSESQVGDAEKNPIALTLRXXXXXXX 895
            V +D         +S++A   L  E  EMVE   QSE       K+ I LTLR       
Sbjct: 408  VEED--------NASARA---LEAEGLEMVEGSTQSEV------KDDIPLTLRIRAAIGT 450

Query: 896  XXXXXXXXXXXXXDQEDREIEHLVATVIETQLRKIQCKIKHFEELQLIMENEYTQIQELK 1075
                         DQEDREIEHLVAT+IE Q+ K+Q K+KHF+EL+L+ME E+ +++ELK
Sbjct: 451  ALGATAARAKLLADQEDREIEHLVATIIEAQVEKLQQKVKHFDELELLMEKEHAEMEELK 510

Query: 1076 ESXXXXXXXXXXXXFSAGIARWRDHHSSVK 1165
            +S            F +G+ARW+ H+ S+K
Sbjct: 511  DSILTERIDVLRKTFKSGVARWK-HYPSLK 539


>ref|XP_002511138.1| DNA binding protein, putative [Ricinus communis]
            gi|223550253|gb|EEF51740.1| DNA binding protein, putative
            [Ricinus communis]
          Length = 547

 Score =  229 bits (584), Expect = 1e-57
 Identities = 145/387 (37%), Positives = 201/387 (51%), Gaps = 1/387 (0%)
 Frame = +2

Query: 2    PLASCNDVFGGGLKGLSCVKCGEVFASKSGEANKKENAVTCLKCLKNGNIEESKSENDVN 181
            PL S +DVFG  + G  C  CGE   S   E +K E  + C  C  NG+  ++ S++D  
Sbjct: 165  PLTSHSDVFGKQI-GFVCGNCGETCNSGRYECSKGEY-ILCTNCFNNGDYGQNNSKDDYK 222

Query: 182  FKDSKDGSDNCEVDSWTETEIXXXXXXXXXHGDDWDLVARDVKTKKRSDCISKLIQLPFG 361
            F DS D S       W+E E          HGD+WDLV RDV+TK + +CI+KLI+LPF 
Sbjct: 223  FNDSVDHSSGTV---WSEAETILLLESVLKHGDNWDLVVRDVQTKSKLECIAKLIELPFR 279

Query: 362  ELMLNTTNGKGDGRKSNSSTINIAQGQSTQIELQDLIKE-KDLCHYQVSESDQNGDGETE 538
             L+L++T   GD    + S   +     +  E QD +   + L     + S+QNGD   E
Sbjct: 280  NLLLSSTL-VGDTSGLSGSADYLKPVPVSSSEKQDAVDNIEGLLPESQNVSEQNGDAADE 338

Query: 539  EPPLKRRCIDRLADASDSLMKQVADLSTVVSPHVXXXXXXXXXXXLCEENPYARVYFEDV 718
              PLKR+ I  L+DA   LMKQVA +ST+  P V           LC+E    R  F   
Sbjct: 339  GSPLKRKRIVSLSDAGSCLMKQVALISTMAGPDVASAAAKAAIGALCDETSCPREIFGGK 398

Query: 719  GDDITNVLDSPTSSSKATSLLNVEDSEMVERHAQSESQVGDAEKNPIALTLRXXXXXXXX 898
             D     L SPT  S+   +L V+D+E+ ER  Q E++     +N I LTLR        
Sbjct: 399  EDFPAKGLWSPTLCSRPERVLYVKDTEIKERSTQLETEDTSLGQNDIPLTLRLRTAVATS 458

Query: 899  XXXXXXXXXXXXDQEDREIEHLVATVIETQLRKIQCKIKHFEELQLIMENEYTQIQELKE 1078
                        D+ED++IE LV TV+E QL+K+Q KIKHF+ L+LIME EY +++EL+E
Sbjct: 459  LGAAAAHAKLLADEEDQKIEKLVTTVVEAQLKKLQYKIKHFDNLELIMEKEYAELEELQE 518

Query: 1079 SXXXXXXXXXXXXFSAGIARWRDHHSS 1159
            S              AG+++WRDH ++
Sbjct: 519  SLIEERMDVVQRAIMAGLSKWRDHSAA 545