BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00019985
         (478 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD96948.1| hypothetical protein [Cleome spinosa]                  100   4e-28
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li...   102   2e-26
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ...   102   3e-26
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta...    94   2e-25
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                 95   2e-25

>gb|ABD96948.1| hypothetical protein [Cleome spinosa]
          Length = 539

 Score =  100 bits (250), Expect(2) = 4e-28
 Identities = 44/92 (47%), Positives = 63/92 (68%)
 Frame = -3

Query: 335 LCYSSP*FSILVNGNSEGYFEGKRGLRQGDPLSPYLFVMVMEILTGLLKGALSSKAIVAH 156
           +C  +P FS+ +NG   GYF+G+RGLRQGDPLSPYLF+M ME+L+ +L    +   +  H
Sbjct: 78  VCMETPKFSVSINGELAGYFKGRRGLRQGDPLSPYLFIMSMEVLSRMLDRCAAESRLSLH 137

Query: 155 SKCKKLGISHLCFADDVLLFCKGEMDSIVAIK 60
            KC    I+HL FADD+++F  GE  S++ +K
Sbjct: 138 PKCHSPVITHLAFADDIMIFTSGETRSLLEVK 169



 Score = 48.9 bits (115), Expect(2) = 4e-28
 Identities = 18/49 (36%), Positives = 31/49 (63%)
 Frame = -1

Query: 469 YTRKRGSKRCAIKLDIKKVYDSVSWQSFSLILQRFRIPGKFIDWIYVIL 323
           Y R   SKR  +K+D++K +D+VSW+  + I+Q   +P  F+ W+ V +
Sbjct: 32  YNRPNTSKRAMLKIDLRKAFDTVSWEFITKIMQALNLPRTFVTWVKVCM 80


>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 893

 Score =  102 bits (254), Expect(2) = 2e-26
 Identities = 49/96 (51%), Positives = 65/96 (67%)
 Frame = -3

Query: 341 LDLCYSSP*FSILVNGNSEGYFEGKRGLRQGDPLSPYLFVMVMEILTGLLKGALSSKAIV 162
           ++ C S+P FS++VNG+S G+F+  +GLRQGDPLSPYLFV+ ME+ + LLK    +  I 
Sbjct: 624 INQCISTPYFSVMVNGSSSGFFKSNKGLRQGDPLSPYLFVLAMEVFSSLLKARFDAGYIQ 683

Query: 161 AHSKCKKLGISHLCFADDVLLFCKGEMDSIVAIKEA 54
            H K   L ISHL FADDV++F  G   S+  I EA
Sbjct: 684 YHPKTADLSISHLMFADDVMVFFDGGSSSLHGISEA 719



 Score = 41.6 bits (96), Expect(2) = 2e-26
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -1

Query: 478 IKGYTRKRGSKRCAIKLDIKKVYDSVSWQSFSLILQRFRIPGKFIDWI 335
           + GY  K  S R  +K+D++K +DSV W       +   +P KF+ WI
Sbjct: 577 VHGYNTKNISSRGMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVCWI 624


>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 893

 Score =  102 bits (253), Expect(2) = 3e-26
 Identities = 49/96 (51%), Positives = 65/96 (67%)
 Frame = -3

Query: 341 LDLCYSSP*FSILVNGNSEGYFEGKRGLRQGDPLSPYLFVMVMEILTGLLKGALSSKAIV 162
           ++ C S+P FS++VNG+S G+F+  +GLRQGDPLSPYLFV+ ME+ + LLK    +  I 
Sbjct: 624 INQCISTPYFSVMVNGSSSGFFKSNKGLRQGDPLSPYLFVLAMEVFSSLLKARFDAGYIH 683

Query: 161 AHSKCKKLGISHLCFADDVLLFCKGEMDSIVAIKEA 54
            H K   L ISHL FADDV++F  G   S+  I EA
Sbjct: 684 YHPKTADLSISHLMFADDVMVFFDGGSSSLHGISEA 719



 Score = 41.6 bits (96), Expect(2) = 3e-26
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -1

Query: 478 IKGYTRKRGSKRCAIKLDIKKVYDSVSWQSFSLILQRFRIPGKFIDWI 335
           + GY  K  S R  +K+D++K +DSV W       +   +P KF+ WI
Sbjct: 577 VHGYNTKNISSRGMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVCWI 624


>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1277

 Score = 93.6 bits (231), Expect(2) = 2e-25
 Identities = 44/95 (46%), Positives = 62/95 (65%)
 Frame = -3

Query: 347  H*LDLCYSSP*FSILVNGNSEGYFEGKRGLRQGDPLSPYLFVMVMEILTGLLKGALSSKA 168
            H + LC S+  FS+ VN    G+F  KRGLRQG  LSPYLFV+ M +L+ ++  A   + 
Sbjct: 769  HWIKLCISTATFSVQVNSEQAGFFGSKRGLRQGCALSPYLFVICMNVLSHMIDVAAVHRN 828

Query: 167  IVAHSKCKKLGISHLCFADDVLLFCKGEMDSIVAI 63
            I  H KCKKL ++HLCFADD+++F  G+  S+  +
Sbjct: 829  IGYHPKCKKLSLTHLCFADDLMVFIDGQQRSVEGV 863



 Score = 47.4 bits (111), Expect(2) = 2e-25
 Identities = 21/48 (43%), Positives = 28/48 (58%)
 Frame = -1

Query: 478 IKGYTRKRGSKRCAIKLDIKKVYDSVSWQSFSLILQRFRIPGKFIDWI 335
           +K Y +   S RCA+K+DI K +DSV WQ     L+  + P KF  WI
Sbjct: 724 VKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALKFPEKFRHWI 771


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score = 95.1 bits (235), Expect(2) = 2e-25
 Identities = 45/95 (47%), Positives = 63/95 (66%)
 Frame = -3

Query: 347 H*LDLCYSSP*FSILVNGNSEGYFEGKRGLRQGDPLSPYLFVMVMEILTGLLKGALSSKA 168
           H + LC S+  FS+ VNG   G+F  KRGLRQG  LSPYLFV+ M +L+ ++  A   + 
Sbjct: 200 HWIKLCISTATFSVQVNGELAGFFGSKRGLRQGCALSPYLFVICMNVLSHMIDVAAVHRN 259

Query: 167 IVAHSKCKKLGISHLCFADDVLLFCKGEMDSIVAI 63
           I  H KCKKL ++HLCFADD+++F  G+  S+  +
Sbjct: 260 IGYHPKCKKLSLTHLCFADDLMVFIDGQQRSVEGV 294



 Score = 45.4 bits (106), Expect(2) = 2e-25
 Identities = 20/48 (41%), Positives = 26/48 (54%)
 Frame = -1

Query: 478 IKGYTRKRGSKRCAIKLDIKKVYDSVSWQSFSLILQRFRIPGKFIDWI 335
           +K Y +   S RCA+K+DI K +DSV WQ     L+    P  F  WI
Sbjct: 155 VKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALNFPENFCHWI 202