BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00019952
         (976 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAD95899.1| coat protein [Tobacco stunt virus]                     65   3e-08
dbj|BAD95898.1| coat protein [Tobacco stunt virus] gi|62857194|d...    65   3e-08
gb|ADA60175.1| coat protein [Lettuce big-vein associated virus]        64   4e-08
dbj|BAD95897.1| coat protein [Tobacco stunt virus]                     64   4e-08
gb|AFA36171.1| coat protein [Lettuce big-vein associated virus]        64   6e-08

>dbj|BAD95899.1| coat protein [Tobacco stunt virus]
          Length = 397

 Score = 64.7 bits (156), Expect = 3e-08
 Identities = 60/253 (23%), Positives = 105/253 (41%), Gaps = 5/253 (1%)
 Frame = +1

Query: 220 FRDIPDIIMYTS-KSDFPDDSWRHHEALTLRKLPDVNIIQLGRELFRSLSSGVSQYHVGL 396
           F D+ +I   T+ K  + D+S     +  L  L D + ++  +     L    S   +  
Sbjct: 12  FSDVVEITGKTAGKESWDDESTIAMPSYKLSVLSDADAVREAKIFLTGLFVRSSPRAIAA 71

Query: 397 IFSLAFQLKRPGSGKTARLMPDSDSLAMLADVEIGILDKT-VDESSGTCIEPTEYGDSYQ 573
              + + + R       R+ P  D     ADV++  L+   VD          +     +
Sbjct: 72  ALIMTWNM-RSVDPVAVRIFPAKDKGRDTADVDVKNLEVAGVDYIDAMVETNVKDASDIE 130

Query: 574 IAQGYSYLAASMLKMFARSAENYEKSW--SHIVHGYRKFYSVNCPISGVRPKRDVIKRIH 747
           I +  +++AAS LKMFA+S   + ++W   HI   Y  F     P           + ++
Sbjct: 131 IIRAGAFIAASTLKMFAKSFTGWTQAWEHKHIQKRYADFCKTEYPFKEFTTNAKCAETMY 190

Query: 748 DHFSISELMRATLYRFLYNVNWDGDDGSLQRYLYDIHLSHTGMHVVPIAYKICIVMNCTP 927
           + +   +L + TL R LY +  D  D      L+D HL++TGMH++P      + +  T 
Sbjct: 191 EAYQGQKLYQGTLGRILYALG-DVADPRQTEMLFDQHLANTGMHIIPQFTNAQLSIGATT 249

Query: 928 ATLFTVM-YANRF 963
           A L + + Y   F
Sbjct: 250 AGLLSALNYGQNF 262


>dbj|BAD95898.1| coat protein [Tobacco stunt virus] gi|62857194|dbj|BAD95900.1| coat
           protein [Tobacco stunt virus]
          Length = 397

 Score = 64.7 bits (156), Expect = 3e-08
 Identities = 60/253 (23%), Positives = 105/253 (41%), Gaps = 5/253 (1%)
 Frame = +1

Query: 220 FRDIPDIIMYTS-KSDFPDDSWRHHEALTLRKLPDVNIIQLGRELFRSLSSGVSQYHVGL 396
           F D+ +I   T+ K  + D+S     +  L  L D + ++  +     L    S   +  
Sbjct: 12  FSDVVEITGKTAGKESWDDESTIAMPSYKLSVLSDADAVREAKIFLTGLFVRSSPRAIAA 71

Query: 397 IFSLAFQLKRPGSGKTARLMPDSDSLAMLADVEIGILDKT-VDESSGTCIEPTEYGDSYQ 573
              + + + R       R+ P  D     ADV++  L+   VD          +     +
Sbjct: 72  ALIMTWNM-RSVDPVAVRIFPAKDKGRDTADVDVKNLEVAGVDYIDAMVETNVKDASDIE 130

Query: 574 IAQGYSYLAASMLKMFARSAENYEKSW--SHIVHGYRKFYSVNCPISGVRPKRDVIKRIH 747
           I +  +++AAS LKMFA+S   + ++W   HI   Y  F     P           + ++
Sbjct: 131 IIRAGAFIAASTLKMFAKSFTGWTQAWEHKHIQKRYADFCKTEYPFKEFTTNAKCAETMY 190

Query: 748 DHFSISELMRATLYRFLYNVNWDGDDGSLQRYLYDIHLSHTGMHVVPIAYKICIVMNCTP 927
           + +   +L + TL R LY +  D  D      L+D HL++TGMH++P      + +  T 
Sbjct: 191 EAYQGQKLYQGTLGRILYALG-DVADPRQTEMLFDQHLANTGMHIIPQFTNAQLSIGATT 249

Query: 928 ATLFTVM-YANRF 963
           A L + + Y   F
Sbjct: 250 AGLLSALNYGQNF 262


>gb|ADA60175.1| coat protein [Lettuce big-vein associated virus]
          Length = 397

 Score = 64.3 bits (155), Expect = 4e-08
 Identities = 56/232 (24%), Positives = 98/232 (42%), Gaps = 4/232 (1%)
 Frame = +1

Query: 205 ELPAEFRDIPDIIMYTS-KSDFPDDSWRHHEALTLRKLPDVNIIQLGRELFRSLSSGVSQ 381
           ++P  F D+ +I   T+ K  + D+S     +  L  L D + ++  +     L    S 
Sbjct: 7   KMPEAFSDVVEITGKTAGKESWDDESTIAMPSYKLSVLSDADAVREVKIFLTGLFVRSSP 66

Query: 382 YHVGLIFSLAFQLKRPGSGKTARLMPDSDSLAMLADVEIGILDKT-VDESSGTCIEPTEY 558
             +     + + + R       R+ P  D     ADV++  L+   VD          + 
Sbjct: 67  RAIAAALIMTWNM-RSVDPVAVRIFPAKDKGKDAADVDVKNLEVVGVDYIDAMVETNVKD 125

Query: 559 GDSYQIAQGYSYLAASMLKMFARSAENYEKSW--SHIVHGYRKFYSVNCPISGVRPKRDV 732
               +I +  +++AAS LKMFA+S   + ++W   HI   Y  F     P          
Sbjct: 126 ASDIEIIRAGAFIAASTLKMFAKSFTGWTQAWEHKHIQKRYADFCKTEYPFKEFTTNTKC 185

Query: 733 IKRIHDHFSISELMRATLYRFLYNVNWDGDDGSLQRYLYDIHLSHTGMHVVP 888
            + +++ +   +L + TL R LY +  D  D      L+D HL+ TGMH++P
Sbjct: 186 AETMYEAYQGQKLYQGTLGRILYALG-DVADPRQTEMLFDQHLASTGMHIIP 236


>dbj|BAD95897.1| coat protein [Tobacco stunt virus]
          Length = 397

 Score = 64.3 bits (155), Expect = 4e-08
 Identities = 60/253 (23%), Positives = 105/253 (41%), Gaps = 5/253 (1%)
 Frame = +1

Query: 220 FRDIPDIIMYTS-KSDFPDDSWRHHEALTLRKLPDVNIIQLGRELFRSLSSGVSQYHVGL 396
           F D+ +I   T+ K  + D+S     +  L  L D + ++  +     L    S   +  
Sbjct: 12  FSDVVEITGKTAGKESWDDESTIAMPSYKLSVLSDADAVREAKIFLTGLFVRSSPRAIAA 71

Query: 397 IFSLAFQLKRPGSGKTARLMPDSDSLAMLADVEIGILDKT-VDESSGTCIEPTEYGDSYQ 573
              + + + R       R+ P  D     ADV++  L+   VD          +     +
Sbjct: 72  ALIMTWNM-RSVDPVAVRIFPAKDKGRDTADVDVKNLEVAGVDYIDAMVETNVKDASDTE 130

Query: 574 IAQGYSYLAASMLKMFARSAENYEKSW--SHIVHGYRKFYSVNCPISGVRPKRDVIKRIH 747
           I +  +++AAS LKMFA+S   + ++W   HI   Y  F     P           + ++
Sbjct: 131 IIRAGAFIAASTLKMFAKSFTGWTQAWEHKHIQKRYADFCKTEYPFKEFTTNAKCAETMY 190

Query: 748 DHFSISELMRATLYRFLYNVNWDGDDGSLQRYLYDIHLSHTGMHVVPIAYKICIVMNCTP 927
           + +   +L + TL R LY +  D  D      L+D HL++TGMH++P      + +  T 
Sbjct: 191 EAYQGQKLYQGTLGRILYALG-DVADPRQTEMLFDQHLANTGMHIIPQFTNAQLSIGATT 249

Query: 928 ATLFTVM-YANRF 963
           A L + + Y   F
Sbjct: 250 AGLLSALNYGQNF 262


>gb|AFA36171.1| coat protein [Lettuce big-vein associated virus]
          Length = 397

 Score = 63.9 bits (154), Expect = 6e-08
 Identities = 60/253 (23%), Positives = 105/253 (41%), Gaps = 5/253 (1%)
 Frame = +1

Query: 220 FRDIPDIIMYTS-KSDFPDDSWRHHEALTLRKLPDVNIIQLGRELFRSLSSGVSQYHVGL 396
           F D+ +I   T+ K  + D+S     +  L  L D + ++  +     L    S   +  
Sbjct: 12  FSDVVEITGKTAGKESWDDESTIAMPSYKLSVLSDADAVREVKIFLTGLFVRSSPRAIAA 71

Query: 397 IFSLAFQLKRPGSGKTARLMPDSDSLAMLADVEIGILDKT-VDESSGTCIEPTEYGDSYQ 573
              + + + R       R+ P  D     ADV++  L+   VD          +     +
Sbjct: 72  ALIMTWNM-RSVDPVAVRIFPAKDKGKDTADVDVKNLEVAGVDYIDAMVETNVKDASDIE 130

Query: 574 IAQGYSYLAASMLKMFARSAENYEKSW--SHIVHGYRKFYSVNCPISGVRPKRDVIKRIH 747
           I +  +++AAS LKMFA+S   + ++W   HI   Y  F     P           + ++
Sbjct: 131 IIRAGAFIAASTLKMFAKSFTGWTQAWEHKHIQKRYADFCKTEYPFKEFTTNTKCAETMY 190

Query: 748 DHFSISELMRATLYRFLYNVNWDGDDGSLQRYLYDIHLSHTGMHVVPIAYKICIVMNCTP 927
           + +   +L + TL R LY +  D  D      L+D HL++TGMH++P      + +  T 
Sbjct: 191 EAYQGQKLYQGTLGRILYALG-DVTDPRQTEMLFDQHLANTGMHIIPQFTNAQLSIGATT 249

Query: 928 ATLFTVM-YANRF 963
           A L + + Y   F
Sbjct: 250 AGLLSALNYGQNF 262