BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00019900
         (346 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002520698.1| U1 small nuclear ribonucleoprotein C, putati...    42   4e-07
ref|XP_002304170.1| predicted protein [Populus trichocarpa] gi|2...    42   4e-07
ref|XP_004148886.1| PREDICTED: U1 small nuclear ribonucleoprotei...    42   1e-06
gb|AEO33599.1| hypothetical protein [Amblyomma maculatum]              42   4e-06

>ref|XP_002520698.1| U1 small nuclear ribonucleoprotein C, putative [Ricinus communis]
           gi|223540083|gb|EEF41660.1| U1 small nuclear
           ribonucleoprotein C, putative [Ricinus communis]
          Length = 206

 Score = 42.0 bits (97), Expect(3) = 4e-07
 Identities = 19/21 (90%), Positives = 20/21 (95%)
 Frame = +2

Query: 110 FEEQQTQSLIDQRIKEHLGHS 172
           FEEQQTQSLIDQRIKEHLG +
Sbjct: 41  FEEQQTQSLIDQRIKEHLGQA 61



 Score = 32.7 bits (73), Expect(3) = 4e-07
 Identities = 15/20 (75%), Positives = 16/20 (80%)
 Frame = +1

Query: 145 EDQGASWAFQQVGAAYNQHL 204
           E  G + AFQQVGAAYNQHL
Sbjct: 56  EHLGQAAAFQQVGAAYNQHL 75



 Score = 23.5 bits (49), Expect(3) = 4e-07
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 3  YCDYCDT 23
          YCDYCDT
Sbjct: 5  YCDYCDT 11


>ref|XP_002304170.1| predicted protein [Populus trichocarpa] gi|222841602|gb|EEE79149.1|
           predicted protein [Populus trichocarpa]
          Length = 202

 Score = 42.0 bits (97), Expect(3) = 4e-07
 Identities = 18/26 (69%), Positives = 22/26 (84%)
 Frame = +2

Query: 95  VLFYLFEEQQTQSLIDQRIKEHLGHS 172
           + +  FEEQQTQS+IDQRIKEHLG +
Sbjct: 36  IYYQQFEEQQTQSIIDQRIKEHLGQT 61



 Score = 32.7 bits (73), Expect(3) = 4e-07
 Identities = 15/20 (75%), Positives = 16/20 (80%)
 Frame = +1

Query: 145 EDQGASWAFQQVGAAYNQHL 204
           E  G + AFQQVGAAYNQHL
Sbjct: 56  EHLGQTAAFQQVGAAYNQHL 75



 Score = 23.5 bits (49), Expect(3) = 4e-07
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 3  YCDYCDT 23
          YCDYCDT
Sbjct: 5  YCDYCDT 11


>ref|XP_004148886.1| PREDICTED: U1 small nuclear ribonucleoprotein C-like [Cucumis
           sativus] gi|449491514|ref|XP_004158922.1| PREDICTED: U1
           small nuclear ribonucleoprotein C-like [Cucumis sativus]
          Length = 197

 Score = 42.0 bits (97), Expect(3) = 1e-06
 Identities = 19/21 (90%), Positives = 20/21 (95%)
 Frame = +2

Query: 110 FEEQQTQSLIDQRIKEHLGHS 172
           FEEQQTQSLIDQRIKEHLG +
Sbjct: 41  FEEQQTQSLIDQRIKEHLGQA 61



 Score = 31.2 bits (69), Expect(3) = 1e-06
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +1

Query: 145 EDQGASWAFQQVGAAYNQHL 204
           E  G + AFQQVGAA+NQHL
Sbjct: 56  EHLGQAAAFQQVGAAFNQHL 75



 Score = 23.5 bits (49), Expect(3) = 1e-06
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 3  YCDYCDT 23
          YCDYCDT
Sbjct: 5  YCDYCDT 11


>gb|AEO33599.1| hypothetical protein [Amblyomma maculatum]
          Length = 254

 Score = 42.0 bits (97), Expect(3) = 4e-06
 Identities = 19/21 (90%), Positives = 20/21 (95%)
 Frame = +2

Query: 110 FEEQQTQSLIDQRIKEHLGHS 172
           FEEQQTQSLIDQRIKEHLG +
Sbjct: 103 FEEQQTQSLIDQRIKEHLGQA 123



 Score = 28.9 bits (63), Expect(3) = 4e-06
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 145 EDQGASWAFQQVGAAYNQHLAS 210
           E  G + AF QVGA +NQHL S
Sbjct: 118 EHLGQAAAFHQVGATFNQHLMS 139



 Score = 23.5 bits (49), Expect(3) = 4e-06
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 3  YCDYCDT 23
          YCDYCDT
Sbjct: 67 YCDYCDT 73