BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00019885
         (342 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulga...   130   1e-28
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta...   120   1e-25
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta...   120   1e-25
emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|73210...   119   2e-25
emb|CAB75484.1| putative protein [Arabidopsis thaliana]               116   2e-24

>emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1365

 Score =  130 bits (326), Expect = 1e-28
 Identities = 63/111 (56%), Positives = 80/111 (72%)
 Frame = -3

Query: 337 VVNKMGSLKSPGPDGFQGVFYKKCWDIVGSAVVAFVQDFFTFGFLNPKVNETYIALIPKV 158
           VV +MGSLK+PGPDG   +FY+K W IVG  +   V  FFT G++  + N+T I LIPKV
Sbjct: 449 VVFQMGSLKAPGPDGIPAIFYQKHWSIVGEDIWRAVSHFFTTGYILQEWNQTNICLIPKV 508

Query: 157 ENPDHASKFRPISLCNFGYKIVSKILANRLKGFMNIIVSPFQGAFIKGRSI 5
           E P+ A +FRPISLCN  YKI+SKI+ANRLK  +  IV+P+Q AF+ GR I
Sbjct: 509 ERPEQACQFRPISLCNVIYKIISKIIANRLKPILKSIVTPYQNAFVPGRLI 559


>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1524

 Score =  120 bits (300), Expect = 1e-25
 Identities = 57/108 (52%), Positives = 71/108 (65%)
 Frame = -3

Query: 328 KMGSLKSPGPDGFQGVFYKKCWDIVGSAVVAFVQDFFTFGFLNPKVNETYIALIPKVENP 149
           ++G  K+PGPDG    FYK CWDIVG  V+  V+ FF   F+ P +N T I +IPK+ NP
Sbjct: 595 QIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNP 654

Query: 148 DHASKFRPISLCNFGYKIVSKILANRLKGFMNIIVSPFQGAFIKGRSI 5
              S +RPI+LCN  YK++SK L NRLK  +N IVS  Q AFI GR I
Sbjct: 655 TTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRII 702


>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1750

 Score =  120 bits (300), Expect = 1e-25
 Identities = 57/108 (52%), Positives = 71/108 (65%)
 Frame = -3

Query: 328  KMGSLKSPGPDGFQGVFYKKCWDIVGSAVVAFVQDFFTFGFLNPKVNETYIALIPKVENP 149
            ++G  K+PGPDG    FYK CWDIVG  V+  V+ FF   F+ P +N T I +IPK+ NP
Sbjct: 821  QIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNP 880

Query: 148  DHASKFRPISLCNFGYKIVSKILANRLKGFMNIIVSPFQGAFIKGRSI 5
               S +RPI+LCN  YK++SK L NRLK  +N IVS  Q AFI GR I
Sbjct: 881  TTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRII 928


>emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|7321072|emb|CAB82119.1|
           putative protein [Arabidopsis thaliana]
          Length = 947

 Score =  119 bits (299), Expect = 2e-25
 Identities = 49/108 (45%), Positives = 76/108 (70%)
 Frame = -3

Query: 334 VNKMGSLKSPGPDGFQGVFYKKCWDIVGSAVVAFVQDFFTFGFLNPKVNETYIALIPKVE 155
           +  MG  K+PGPDG+Q +FY+ CW++VG++V+ F  DFF+ G L P+ N+  + LIPKV 
Sbjct: 195 IRSMGKYKAPGPDGYQPIFYQSCWEVVGNSVIRFALDFFSSGILPPQTNDALVVLIPKVP 254

Query: 154 NPDHASKFRPISLCNFGYKIVSKILANRLKGFMNIIVSPFQGAFIKGR 11
            P+  ++FRPISLCN  +K+++K++  RLK  +  ++ P Q +FI GR
Sbjct: 255 KPERMNQFRPISLCNAIFKMITKMMVLRLKKVIGKLIGPSQSSFIPGR 302


>emb|CAB75484.1| putative protein [Arabidopsis thaliana]
          Length = 851

 Score =  116 bits (290), Expect = 2e-24
 Identities = 55/112 (49%), Positives = 74/112 (66%)
 Frame = -3

Query: 340 KVVNKMGSLKSPGPDGFQGVFYKKCWDIVGSAVVAFVQDFFTFGFLNPKVNETYIALIPK 161
           + + ++G  K+PGPDG    FYK+CWDIVG+ V+  V+ FF    +   VN T I +IPK
Sbjct: 56  EAICQIGDDKAPGPDGLTARFYKQCWDIVGNDVIKEVKLFFESSHMKTSVNHTNICMIPK 115

Query: 160 VENPDHASKFRPISLCNFGYKIVSKILANRLKGFMNIIVSPFQGAFIKGRSI 5
           ++NP   S +RPI+LCN  YK++SK + NRLK  +N IVS  Q AFI GR I
Sbjct: 116 IQNPQTLSDYRPIALCNVLYKVISKCMVNRLKAHLNSIVSDSQAAFIPGRII 167