BLASTX nr result
ID: Coptis25_contig00019885
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00019885 (342 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulga... 130 1e-28 gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 120 1e-25 gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 120 1e-25 emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|73210... 119 2e-25 emb|CAB75484.1| putative protein [Arabidopsis thaliana] 116 2e-24 >emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulgaris] Length = 1365 Score = 130 bits (326), Expect = 1e-28 Identities = 63/111 (56%), Positives = 80/111 (72%) Frame = -3 Query: 337 VVNKMGSLKSPGPDGFQGVFYKKCWDIVGSAVVAFVQDFFTFGFLNPKVNETYIALIPKV 158 VV +MGSLK+PGPDG +FY+K W IVG + V FFT G++ + N+T I LIPKV Sbjct: 449 VVFQMGSLKAPGPDGIPAIFYQKHWSIVGEDIWRAVSHFFTTGYILQEWNQTNICLIPKV 508 Query: 157 ENPDHASKFRPISLCNFGYKIVSKILANRLKGFMNIIVSPFQGAFIKGRSI 5 E P+ A +FRPISLCN YKI+SKI+ANRLK + IV+P+Q AF+ GR I Sbjct: 509 ERPEQACQFRPISLCNVIYKIISKIIANRLKPILKSIVTPYQNAFVPGRLI 559 >gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1524 Score = 120 bits (300), Expect = 1e-25 Identities = 57/108 (52%), Positives = 71/108 (65%) Frame = -3 Query: 328 KMGSLKSPGPDGFQGVFYKKCWDIVGSAVVAFVQDFFTFGFLNPKVNETYIALIPKVENP 149 ++G K+PGPDG FYK CWDIVG V+ V+ FF F+ P +N T I +IPK+ NP Sbjct: 595 QIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNP 654 Query: 148 DHASKFRPISLCNFGYKIVSKILANRLKGFMNIIVSPFQGAFIKGRSI 5 S +RPI+LCN YK++SK L NRLK +N IVS Q AFI GR I Sbjct: 655 TTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRII 702 >gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1750 Score = 120 bits (300), Expect = 1e-25 Identities = 57/108 (52%), Positives = 71/108 (65%) Frame = -3 Query: 328 KMGSLKSPGPDGFQGVFYKKCWDIVGSAVVAFVQDFFTFGFLNPKVNETYIALIPKVENP 149 ++G K+PGPDG FYK CWDIVG V+ V+ FF F+ P +N T I +IPK+ NP Sbjct: 821 QIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNP 880 Query: 148 DHASKFRPISLCNFGYKIVSKILANRLKGFMNIIVSPFQGAFIKGRSI 5 S +RPI+LCN YK++SK L NRLK +N IVS Q AFI GR I Sbjct: 881 TTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRII 928 >emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|7321072|emb|CAB82119.1| putative protein [Arabidopsis thaliana] Length = 947 Score = 119 bits (299), Expect = 2e-25 Identities = 49/108 (45%), Positives = 76/108 (70%) Frame = -3 Query: 334 VNKMGSLKSPGPDGFQGVFYKKCWDIVGSAVVAFVQDFFTFGFLNPKVNETYIALIPKVE 155 + MG K+PGPDG+Q +FY+ CW++VG++V+ F DFF+ G L P+ N+ + LIPKV Sbjct: 195 IRSMGKYKAPGPDGYQPIFYQSCWEVVGNSVIRFALDFFSSGILPPQTNDALVVLIPKVP 254 Query: 154 NPDHASKFRPISLCNFGYKIVSKILANRLKGFMNIIVSPFQGAFIKGR 11 P+ ++FRPISLCN +K+++K++ RLK + ++ P Q +FI GR Sbjct: 255 KPERMNQFRPISLCNAIFKMITKMMVLRLKKVIGKLIGPSQSSFIPGR 302 >emb|CAB75484.1| putative protein [Arabidopsis thaliana] Length = 851 Score = 116 bits (290), Expect = 2e-24 Identities = 55/112 (49%), Positives = 74/112 (66%) Frame = -3 Query: 340 KVVNKMGSLKSPGPDGFQGVFYKKCWDIVGSAVVAFVQDFFTFGFLNPKVNETYIALIPK 161 + + ++G K+PGPDG FYK+CWDIVG+ V+ V+ FF + VN T I +IPK Sbjct: 56 EAICQIGDDKAPGPDGLTARFYKQCWDIVGNDVIKEVKLFFESSHMKTSVNHTNICMIPK 115 Query: 160 VENPDHASKFRPISLCNFGYKIVSKILANRLKGFMNIIVSPFQGAFIKGRSI 5 ++NP S +RPI+LCN YK++SK + NRLK +N IVS Q AFI GR I Sbjct: 116 IQNPQTLSDYRPIALCNVLYKVISKCMVNRLKAHLNSIVSDSQAAFIPGRII 167