BLASTX nr result
ID: Coptis25_contig00019857
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00019857
(1544 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN79321.1| hypothetical protein VITISV_018984 [Vitis vinifera] 144 2e-36
gb|ADP20179.1| gag-pol polyprotein [Silene latifolia] 153 1e-34
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni... 147 6e-33
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group] 145 4e-32
emb|CAN64427.1| hypothetical protein VITISV_029384 [Vitis vinifera] 144 8e-32
>emb|CAN79321.1| hypothetical protein VITISV_018984 [Vitis vinifera]
Length = 1521
Score = 125 bits (313), Expect(2) = 2e-36
Identities = 59/92 (64%), Positives = 70/92 (76%)
Frame = +1
Query: 1048 FSQLFEVACDACKVGIGAALSQNGRLVAFYSQKLCGPSSRYSTYDVELYAVVQALRHWRH 1227
F ++FEVACDA VGIGA LSQ G VAF+S+KL G +YSTYD+E YAVVQA+RHW+H
Sbjct: 914 FEKVFEVACDASHVGIGAVLSQEGHPVAFFSEKLNGAKKKYSTYDLEFYAVVQAIRHWQH 973
Query: 1228 YLLHCEFVLKYDHEALRFFNSQAKVTDCQAKW 1323
YL + EFVL DHEALR+ NSQ K+ AKW
Sbjct: 974 YLSYKEFVLYSDHEALRYLNSQKKLNSRHAKW 1005
Score = 55.8 bits (133), Expect(2) = 2e-36
Identities = 28/63 (44%), Positives = 39/63 (61%)
Frame = +2
Query: 1325 AFLQGYNFLLKHLPSTANKVADALSRREHILVSLRTTVFGFDELNGLYALDPFFDPIFQS 1504
+FLQ + F LKH NKVADALSR+ +LV++ TT GF+EL Y D F ++ S
Sbjct: 1007 SFLQLFTFNLKHCAGIENKVADALSRKALLLVNMSTTTIGFEELKHCYDNDADFGDVYSS 1066
Query: 1505 CIN 1513
++
Sbjct: 1067 LLS 1069
Score = 144 bits (364), Expect = 5e-32
Identities = 86/221 (38%), Positives = 123/221 (55%), Gaps = 18/221 (8%)
Frame = +2
Query: 341 IETPTGKEQYNAPAPLVHAESDKSQPC-----LLKTHFSLMATPLSPSQKT-GTESWRRH 502
+E P + + + E + S+ C + + H SL+ PL K G E WRR
Sbjct: 349 VEEPESELESYLKKEETYNEDEVSEECDYYDGMTEGH-SLVVRPLLTIPKVKGEEDWRRI 407
Query: 503 SIFRTRCISKGKLCSVVIDGGSTDNLVSQEMVDKLNLKTVNHPKPFSIQWFQSRNPVVVD 682
SIF+TR G+LC+++IDGGS+ N+ SQE+V+KLNLKT HP PF + W + + V
Sbjct: 408 SIFQTRISCHGRLCTMIIDGGSSLNIASQELVEKLNLKTERHPNPFRVAWVNDTS-IPVS 466
Query: 683 KQCLVPFTI-EPYEDQVTCTVVPMDVCHLLLGRPCQFDHKSVHNGEFNTYSIVHNGRKLI 859
+CLV F + +E+ V C V+P+ V H+LLGRP FD K H+G NTY+++HNGRK I
Sbjct: 467 FRCLVTFLFGKDFEESVWCEVLPIKVSHILLGRPWLFDRKVQHDGYENTYALIHNGRKKI 526
Query: 860 LEPLP--PPAAQKTVSA---------TFLAEAKEVGTFFVI 949
L P+ PP + +A F E+KE F +
Sbjct: 527 LRPMKEVPPIKKSNENAQPKKVLTMCQFENESKETXVIFAL 567
>gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]
Length = 1475
Score = 153 bits (386), Expect = 1e-34
Identities = 79/181 (43%), Positives = 109/181 (60%), Gaps = 1/181 (0%)
Frame = +2
Query: 392 HAESDKSQPCLLKTHFSLMATPLSPSQKTGTESWRRHSIFRTRCISKGKLCSVVIDGGST 571
H E D P SL+ + +Q E +R IFR+RC KG++C+++IDGGS
Sbjct: 353 HEEDDVVMP---DAGLSLVTWRVMHTQPQPLEMDQRQQIFRSRCTIKGRVCNLIIDGGSC 409
Query: 572 DNLVSQEMVDKLNLKTVNHPKPFSIQWFQSRNPVVVDKQCLVPFTI-EPYEDQVTCTVVP 748
N+ S +++KL+L T +HP P+ ++W V VDKQCLV F+I + Y D+ C V+P
Sbjct: 410 TNVASSTLIEKLSLPTQDHPSPYKLRWLNKGAEVRVDKQCLVTFSIGKNYSDEALCDVLP 469
Query: 749 MDVCHLLLGRPCQFDHKSVHNGEFNTYSIVHNGRKLILEPLPPPAAQKTVSATFLAEAKE 928
MD CHLLLGRP +FD SVH+G NTY+ RK+IL PL PP + T + L +KE
Sbjct: 470 MDACHLLLGRPWEFDRDSVHHGRDNTYTFKFRSRKVILTPL-PPVLKHTTPPSMLEPSKE 528
Query: 929 V 931
V
Sbjct: 529 V 529
Score = 105 bits (261), Expect(2) = 2e-27
Identities = 49/92 (53%), Positives = 62/92 (67%)
Frame = +1
Query: 1048 FSQLFEVACDACKVGIGAALSQNGRLVAFYSQKLCGPSSRYSTYDVELYAVVQALRHWRH 1227
F++LFEV CDA +GIGA L Q + +A++S+KL G YSTYD E YA+V+AL HW H
Sbjct: 895 FNKLFEVECDASGIGIGAVLVQEHKPIAYFSEKLSGAKLNYSTYDKEFYAIVRALNHWSH 954
Query: 1228 YLLHCEFVLKYDHEALRFFNSQAKVTDCQAKW 1323
YL FVL DHEAL++ N Q K+ AKW
Sbjct: 955 YLKPRPFVLHSDHEALKYINGQHKLNHRHAKW 986
Score = 45.1 bits (105), Expect(2) = 2e-27
Identities = 24/53 (45%), Positives = 31/53 (58%)
Frame = +2
Query: 1328 FLQGYNFLLKHLPSTANKVADALSRREHILVSLRTTVFGFDELNGLYALDPFF 1486
FLQ +NF K++ N VADALSRR +L + V GF+ + LY DP F
Sbjct: 989 FLQSFNFSSKYIEGKDNIVADALSRRFIMLSFMEQRVLGFEYMKELYVEDPDF 1041
>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1616
Score = 147 bits (372), Expect = 6e-33
Identities = 71/151 (47%), Positives = 94/151 (62%)
Frame = +2
Query: 440 SLMATPLSPSQKTGTESWRRHSIFRTRCISKGKLCSVVIDGGSTDNLVSQEMVDKLNLKT 619
SL+ + +Q E +RH++F+T+C+ K + C V+IDGGS +NL S EMV+KL L T
Sbjct: 468 SLVVQRVLSAQMERAEQNQRHTLFQTKCVIKERSCRVIIDGGSCNNLASAEMVEKLALST 527
Query: 620 VNHPKPFSIQWFQSRNPVVVDKQCLVPFTIEPYEDQVTCTVVPMDVCHLLLGRPCQFDHK 799
HP+P+ IQW S V V + V F I Y D + C VVPM C +LLGRP QFD
Sbjct: 528 QPHPQPYYIQWLNSSGKVKVTRLVRVHFAIGSYHDSINCDVVPMQACSMLLGRPWQFDKD 587
Query: 800 SVHNGEFNTYSIVHNGRKLILEPLPPPAAQK 892
S+H G+ N YS VHNG+KL+L P+ P K
Sbjct: 588 SLHFGKSNQYSFVHNGKKLVLHPMSPEVILK 618
Score = 101 bits (252), Expect = 5e-19
Identities = 50/105 (47%), Positives = 68/105 (64%)
Frame = +1
Query: 1048 FSQLFEVACDACKVGIGAALSQNGRLVAFYSQKLCGPSSRYSTYDVELYAVVQALRHWRH 1227
F++ FE CDA +G+G L Q G+ VA++S+KL GPS YSTYD EL+A+V+ L W+H
Sbjct: 1038 FNKTFEHECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKELFALVRTLETWQH 1097
Query: 1228 YLLHCEFVLKYDHEALRFFNSQAKVTDCQAKWCFSTGVQFLAETP 1362
YL EFV+ DHE+L+ SQAK+ AKW V+F+ P
Sbjct: 1098 YLWPKEFVIHSDHESLKHIRSQAKLNRRHAKW-----VEFIESFP 1137
>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
Length = 1587
Score = 145 bits (365), Expect = 4e-32
Identities = 70/151 (46%), Positives = 93/151 (61%)
Frame = +2
Query: 440 SLMATPLSPSQKTGTESWRRHSIFRTRCISKGKLCSVVIDGGSTDNLVSQEMVDKLNLKT 619
SL+ + +Q E + H++F+T+C+ K + C V+IDGGS +NL S EMV+KL L T
Sbjct: 468 SLVVQRVLSAQMERAEQNQLHTLFQTKCVIKERSCHVIIDGGSCNNLASAEMVEKLALST 527
Query: 620 VNHPKPFSIQWFQSRNPVVVDKQCLVPFTIEPYEDQVTCTVVPMDVCHLLLGRPCQFDHK 799
HP+P+ IQW S V V + V F I Y D + C VVPM C +LLGRP QFD
Sbjct: 528 QPHPQPYYIQWLNSSGKVKVTRLVRVHFAIGSYHDSINCDVVPMQACSMLLGRPWQFDKD 587
Query: 800 SVHNGEFNTYSIVHNGRKLILEPLPPPAAQK 892
S+H G+ N YS VHNG+KL+L P+ P K
Sbjct: 588 SLHFGKSNQYSFVHNGKKLVLHPMSPEVILK 618
Score = 101 bits (252), Expect = 5e-19
Identities = 50/105 (47%), Positives = 68/105 (64%)
Frame = +1
Query: 1048 FSQLFEVACDACKVGIGAALSQNGRLVAFYSQKLCGPSSRYSTYDVELYAVVQALRHWRH 1227
F++ FE+ CDA +G+G L Q G+ VA++S+KL GPS YSTYD EL+A+V+ L W+H
Sbjct: 1038 FNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKELFALVRTLETWQH 1097
Query: 1228 YLLHCEFVLKYDHEALRFFNSQAKVTDCQAKWCFSTGVQFLAETP 1362
YL EFV+ DHE+L+ SQAK AKW V+F+ P
Sbjct: 1098 YLWPKEFVIHSDHESLKHIRSQAKHNRRHAKW-----VEFIESFP 1137
>emb|CAN64427.1| hypothetical protein VITISV_029384 [Vitis vinifera]
Length = 1392
Score = 144 bits (362), Expect = 8e-32
Identities = 75/159 (47%), Positives = 103/159 (64%), Gaps = 4/159 (2%)
Frame = +2
Query: 440 SLMATPLSPSQKT-GTESWRRHSIFRTRCISKGKLCSVVIDGGSTDNLVSQEMVDKLNLK 616
SL+ PL K G E WRR SIF+TR +G+LC+++IDGGS+ N+ SQE+V+KLNLK
Sbjct: 397 SLVVRPLLTVPKVKGEEDWRRTSIFQTRISCQGRLCTMIIDGGSSLNIASQELVEKLNLK 456
Query: 617 TVNHPKPFSIQWFQSRNPVVVDKQCLVPFTI-EPYEDQVTCTVVPMDVCHLLLGRPCQFD 793
T HP PF + W + + V +CLV F + +E+ V C V+P+ V H+LLGRP FD
Sbjct: 457 TERHPNPFRVAWVNDTS-IPVSFRCLVTFLFGKDFEESVWCEVLPIKVSHILLGRPWLFD 515
Query: 794 HKSVHNGEFNTYSIVHNGRKLILEPLP--PPAAQKTVSA 904
K H+G NTY+++HNGRK IL P+ PP + +A
Sbjct: 516 RKVQHDGYENTYALIHNGRKKILRPMKEVPPIKKSDENA 554
Score = 125 bits (313), Expect = 4e-26
Identities = 59/92 (64%), Positives = 70/92 (76%)
Frame = +1
Query: 1048 FSQLFEVACDACKVGIGAALSQNGRLVAFYSQKLCGPSSRYSTYDVELYAVVQALRHWRH 1227
F ++FEVACDA VGIGA LSQ G VAF+S+KL G +YSTYD+E YAVVQA+RHW+H
Sbjct: 839 FEKVFEVACDASHVGIGAVLSQEGHPVAFFSEKLNGAKKKYSTYDLEFYAVVQAIRHWQH 898
Query: 1228 YLLHCEFVLKYDHEALRFFNSQAKVTDCQAKW 1323
YL + EFVL DHEALR+ NSQ K+ AKW
Sbjct: 899 YLSYKEFVLYSDHEALRYLNSQKKLNSRHAKW 930