BLASTX nr result

ID: Coptis25_contig00019857 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00019857
         (1544 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN79321.1| hypothetical protein VITISV_018984 [Vitis vinifera]   144   2e-36
gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]                 153   1e-34
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni...   147   6e-33
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]       145   4e-32
emb|CAN64427.1| hypothetical protein VITISV_029384 [Vitis vinifera]   144   8e-32

>emb|CAN79321.1| hypothetical protein VITISV_018984 [Vitis vinifera]
          Length = 1521

 Score =  125 bits (313), Expect(2) = 2e-36
 Identities = 59/92 (64%), Positives = 70/92 (76%)
 Frame = +1

Query: 1048 FSQLFEVACDACKVGIGAALSQNGRLVAFYSQKLCGPSSRYSTYDVELYAVVQALRHWRH 1227
            F ++FEVACDA  VGIGA LSQ G  VAF+S+KL G   +YSTYD+E YAVVQA+RHW+H
Sbjct: 914  FEKVFEVACDASHVGIGAVLSQEGHPVAFFSEKLNGAKKKYSTYDLEFYAVVQAIRHWQH 973

Query: 1228 YLLHCEFVLKYDHEALRFFNSQAKVTDCQAKW 1323
            YL + EFVL  DHEALR+ NSQ K+    AKW
Sbjct: 974  YLSYKEFVLYSDHEALRYLNSQKKLNSRHAKW 1005



 Score = 55.8 bits (133), Expect(2) = 2e-36
 Identities = 28/63 (44%), Positives = 39/63 (61%)
 Frame = +2

Query: 1325 AFLQGYNFLLKHLPSTANKVADALSRREHILVSLRTTVFGFDELNGLYALDPFFDPIFQS 1504
            +FLQ + F LKH     NKVADALSR+  +LV++ TT  GF+EL   Y  D  F  ++ S
Sbjct: 1007 SFLQLFTFNLKHCAGIENKVADALSRKALLLVNMSTTTIGFEELKHCYDNDADFGDVYSS 1066

Query: 1505 CIN 1513
             ++
Sbjct: 1067 LLS 1069



 Score =  144 bits (364), Expect = 5e-32
 Identities = 86/221 (38%), Positives = 123/221 (55%), Gaps = 18/221 (8%)
 Frame = +2

Query: 341  IETPTGKEQYNAPAPLVHAESDKSQPC-----LLKTHFSLMATPLSPSQKT-GTESWRRH 502
            +E P  + +        + E + S+ C     + + H SL+  PL    K  G E WRR 
Sbjct: 349  VEEPESELESYLKKEETYNEDEVSEECDYYDGMTEGH-SLVVRPLLTIPKVKGEEDWRRI 407

Query: 503  SIFRTRCISKGKLCSVVIDGGSTDNLVSQEMVDKLNLKTVNHPKPFSIQWFQSRNPVVVD 682
            SIF+TR    G+LC+++IDGGS+ N+ SQE+V+KLNLKT  HP PF + W    + + V 
Sbjct: 408  SIFQTRISCHGRLCTMIIDGGSSLNIASQELVEKLNLKTERHPNPFRVAWVNDTS-IPVS 466

Query: 683  KQCLVPFTI-EPYEDQVTCTVVPMDVCHLLLGRPCQFDHKSVHNGEFNTYSIVHNGRKLI 859
             +CLV F   + +E+ V C V+P+ V H+LLGRP  FD K  H+G  NTY+++HNGRK I
Sbjct: 467  FRCLVTFLFGKDFEESVWCEVLPIKVSHILLGRPWLFDRKVQHDGYENTYALIHNGRKKI 526

Query: 860  LEPLP--PPAAQKTVSA---------TFLAEAKEVGTFFVI 949
            L P+   PP  +   +A          F  E+KE    F +
Sbjct: 527  LRPMKEVPPIKKSNENAQPKKVLTMCQFENESKETXVIFAL 567


>gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]
          Length = 1475

 Score =  153 bits (386), Expect = 1e-34
 Identities = 79/181 (43%), Positives = 109/181 (60%), Gaps = 1/181 (0%)
 Frame = +2

Query: 392 HAESDKSQPCLLKTHFSLMATPLSPSQKTGTESWRRHSIFRTRCISKGKLCSVVIDGGST 571
           H E D   P       SL+   +  +Q    E  +R  IFR+RC  KG++C+++IDGGS 
Sbjct: 353 HEEDDVVMP---DAGLSLVTWRVMHTQPQPLEMDQRQQIFRSRCTIKGRVCNLIIDGGSC 409

Query: 572 DNLVSQEMVDKLNLKTVNHPKPFSIQWFQSRNPVVVDKQCLVPFTI-EPYEDQVTCTVVP 748
            N+ S  +++KL+L T +HP P+ ++W      V VDKQCLV F+I + Y D+  C V+P
Sbjct: 410 TNVASSTLIEKLSLPTQDHPSPYKLRWLNKGAEVRVDKQCLVTFSIGKNYSDEALCDVLP 469

Query: 749 MDVCHLLLGRPCQFDHKSVHNGEFNTYSIVHNGRKLILEPLPPPAAQKTVSATFLAEAKE 928
           MD CHLLLGRP +FD  SVH+G  NTY+     RK+IL PL PP  + T   + L  +KE
Sbjct: 470 MDACHLLLGRPWEFDRDSVHHGRDNTYTFKFRSRKVILTPL-PPVLKHTTPPSMLEPSKE 528

Query: 929 V 931
           V
Sbjct: 529 V 529



 Score =  105 bits (261), Expect(2) = 2e-27
 Identities = 49/92 (53%), Positives = 62/92 (67%)
 Frame = +1

Query: 1048 FSQLFEVACDACKVGIGAALSQNGRLVAFYSQKLCGPSSRYSTYDVELYAVVQALRHWRH 1227
            F++LFEV CDA  +GIGA L Q  + +A++S+KL G    YSTYD E YA+V+AL HW H
Sbjct: 895  FNKLFEVECDASGIGIGAVLVQEHKPIAYFSEKLSGAKLNYSTYDKEFYAIVRALNHWSH 954

Query: 1228 YLLHCEFVLKYDHEALRFFNSQAKVTDCQAKW 1323
            YL    FVL  DHEAL++ N Q K+    AKW
Sbjct: 955  YLKPRPFVLHSDHEALKYINGQHKLNHRHAKW 986



 Score = 45.1 bits (105), Expect(2) = 2e-27
 Identities = 24/53 (45%), Positives = 31/53 (58%)
 Frame = +2

Query: 1328 FLQGYNFLLKHLPSTANKVADALSRREHILVSLRTTVFGFDELNGLYALDPFF 1486
            FLQ +NF  K++    N VADALSRR  +L  +   V GF+ +  LY  DP F
Sbjct: 989  FLQSFNFSSKYIEGKDNIVADALSRRFIMLSFMEQRVLGFEYMKELYVEDPDF 1041


>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
           gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1616

 Score =  147 bits (372), Expect = 6e-33
 Identities = 71/151 (47%), Positives = 94/151 (62%)
 Frame = +2

Query: 440 SLMATPLSPSQKTGTESWRRHSIFRTRCISKGKLCSVVIDGGSTDNLVSQEMVDKLNLKT 619
           SL+   +  +Q    E  +RH++F+T+C+ K + C V+IDGGS +NL S EMV+KL L T
Sbjct: 468 SLVVQRVLSAQMERAEQNQRHTLFQTKCVIKERSCRVIIDGGSCNNLASAEMVEKLALST 527

Query: 620 VNHPKPFSIQWFQSRNPVVVDKQCLVPFTIEPYEDQVTCTVVPMDVCHLLLGRPCQFDHK 799
             HP+P+ IQW  S   V V +   V F I  Y D + C VVPM  C +LLGRP QFD  
Sbjct: 528 QPHPQPYYIQWLNSSGKVKVTRLVRVHFAIGSYHDSINCDVVPMQACSMLLGRPWQFDKD 587

Query: 800 SVHNGEFNTYSIVHNGRKLILEPLPPPAAQK 892
           S+H G+ N YS VHNG+KL+L P+ P    K
Sbjct: 588 SLHFGKSNQYSFVHNGKKLVLHPMSPEVILK 618



 Score =  101 bits (252), Expect = 5e-19
 Identities = 50/105 (47%), Positives = 68/105 (64%)
 Frame = +1

Query: 1048 FSQLFEVACDACKVGIGAALSQNGRLVAFYSQKLCGPSSRYSTYDVELYAVVQALRHWRH 1227
            F++ FE  CDA  +G+G  L Q G+ VA++S+KL GPS  YSTYD EL+A+V+ L  W+H
Sbjct: 1038 FNKTFEHECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKELFALVRTLETWQH 1097

Query: 1228 YLLHCEFVLKYDHEALRFFNSQAKVTDCQAKWCFSTGVQFLAETP 1362
            YL   EFV+  DHE+L+   SQAK+    AKW     V+F+   P
Sbjct: 1098 YLWPKEFVIHSDHESLKHIRSQAKLNRRHAKW-----VEFIESFP 1137


>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
          Length = 1587

 Score =  145 bits (365), Expect = 4e-32
 Identities = 70/151 (46%), Positives = 93/151 (61%)
 Frame = +2

Query: 440 SLMATPLSPSQKTGTESWRRHSIFRTRCISKGKLCSVVIDGGSTDNLVSQEMVDKLNLKT 619
           SL+   +  +Q    E  + H++F+T+C+ K + C V+IDGGS +NL S EMV+KL L T
Sbjct: 468 SLVVQRVLSAQMERAEQNQLHTLFQTKCVIKERSCHVIIDGGSCNNLASAEMVEKLALST 527

Query: 620 VNHPKPFSIQWFQSRNPVVVDKQCLVPFTIEPYEDQVTCTVVPMDVCHLLLGRPCQFDHK 799
             HP+P+ IQW  S   V V +   V F I  Y D + C VVPM  C +LLGRP QFD  
Sbjct: 528 QPHPQPYYIQWLNSSGKVKVTRLVRVHFAIGSYHDSINCDVVPMQACSMLLGRPWQFDKD 587

Query: 800 SVHNGEFNTYSIVHNGRKLILEPLPPPAAQK 892
           S+H G+ N YS VHNG+KL+L P+ P    K
Sbjct: 588 SLHFGKSNQYSFVHNGKKLVLHPMSPEVILK 618



 Score =  101 bits (252), Expect = 5e-19
 Identities = 50/105 (47%), Positives = 68/105 (64%)
 Frame = +1

Query: 1048 FSQLFEVACDACKVGIGAALSQNGRLVAFYSQKLCGPSSRYSTYDVELYAVVQALRHWRH 1227
            F++ FE+ CDA  +G+G  L Q G+ VA++S+KL GPS  YSTYD EL+A+V+ L  W+H
Sbjct: 1038 FNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKELFALVRTLETWQH 1097

Query: 1228 YLLHCEFVLKYDHEALRFFNSQAKVTDCQAKWCFSTGVQFLAETP 1362
            YL   EFV+  DHE+L+   SQAK     AKW     V+F+   P
Sbjct: 1098 YLWPKEFVIHSDHESLKHIRSQAKHNRRHAKW-----VEFIESFP 1137


>emb|CAN64427.1| hypothetical protein VITISV_029384 [Vitis vinifera]
          Length = 1392

 Score =  144 bits (362), Expect = 8e-32
 Identities = 75/159 (47%), Positives = 103/159 (64%), Gaps = 4/159 (2%)
 Frame = +2

Query: 440 SLMATPLSPSQKT-GTESWRRHSIFRTRCISKGKLCSVVIDGGSTDNLVSQEMVDKLNLK 616
           SL+  PL    K  G E WRR SIF+TR   +G+LC+++IDGGS+ N+ SQE+V+KLNLK
Sbjct: 397 SLVVRPLLTVPKVKGEEDWRRTSIFQTRISCQGRLCTMIIDGGSSLNIASQELVEKLNLK 456

Query: 617 TVNHPKPFSIQWFQSRNPVVVDKQCLVPFTI-EPYEDQVTCTVVPMDVCHLLLGRPCQFD 793
           T  HP PF + W    + + V  +CLV F   + +E+ V C V+P+ V H+LLGRP  FD
Sbjct: 457 TERHPNPFRVAWVNDTS-IPVSFRCLVTFLFGKDFEESVWCEVLPIKVSHILLGRPWLFD 515

Query: 794 HKSVHNGEFNTYSIVHNGRKLILEPLP--PPAAQKTVSA 904
            K  H+G  NTY+++HNGRK IL P+   PP  +   +A
Sbjct: 516 RKVQHDGYENTYALIHNGRKKILRPMKEVPPIKKSDENA 554



 Score =  125 bits (313), Expect = 4e-26
 Identities = 59/92 (64%), Positives = 70/92 (76%)
 Frame = +1

Query: 1048 FSQLFEVACDACKVGIGAALSQNGRLVAFYSQKLCGPSSRYSTYDVELYAVVQALRHWRH 1227
            F ++FEVACDA  VGIGA LSQ G  VAF+S+KL G   +YSTYD+E YAVVQA+RHW+H
Sbjct: 839  FEKVFEVACDASHVGIGAVLSQEGHPVAFFSEKLNGAKKKYSTYDLEFYAVVQAIRHWQH 898

Query: 1228 YLLHCEFVLKYDHEALRFFNSQAKVTDCQAKW 1323
            YL + EFVL  DHEALR+ NSQ K+    AKW
Sbjct: 899  YLSYKEFVLYSDHEALRYLNSQKKLNSRHAKW 930


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