BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00019821
         (2312 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002519191.1| pentatricopeptide repeat-containing protein,...   785   0.0  
ref|XP_004162218.1| PREDICTED: putative pentatricopeptide repeat...   729   0.0  
ref|XP_004134500.1| PREDICTED: LOW QUALITY PROTEIN: putative pen...   710   0.0  
ref|XP_003530549.1| PREDICTED: putative pentatricopeptide repeat...   668   0.0  
ref|NP_188314.1| pentatricopeptide repeat-containing protein [Ar...   663   0.0  

>ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223541506|gb|EEF43055.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 719

 Score =  785 bits (2028), Expect = 0.0
 Identities = 387/678 (57%), Positives = 503/678 (74%), Gaps = 12/678 (1%)
 Frame = +2

Query: 14   FSSISSKPSPCTKTL-TQKISIPYNRKKPISNDASKLTS-----------LKAPVTGKSP 157
            F+S SS+ S  T    + ++    N  K   N  SK  +           L    T  + 
Sbjct: 6    FASSSSRSSSSTALKKSSQLQESDNHFKSAQNHISKTEASLGGNSDTHYLLNPQFTNPNS 65

Query: 158  FNLSNNRILPNVHKLPVNVIEHSYLSEILARNDWFYLLNHEFEAKRTSLNQQYVVRVLQN 337
              +SNN I  N +  P   I+H Y S IL+R+DWF LLNHEF+AKR +LN   V  VLQN
Sbjct: 66   LKISNNPISANKYSKP---IDHHYFSRILSRHDWFLLLNHEFKAKRITLNSHSVASVLQN 122

Query: 338  EENALSCVRFYVWVSNVQDRLAKDQLVHRILGNRLYRNGPVVLSADLIKEVVGFKCRITE 517
            +EN L  ++FY+WVSN+    AKDQ V  +L N LYR GPVVLS +L+K++     RI E
Sbjct: 123  QENPLYPLKFYIWVSNMDPLFAKDQSVKGVLANCLYRKGPVVLSVELLKDIKASGYRINE 182

Query: 518  EIVCVMIGSWGRLGLAKYCTEVFGQISYLGLSPTTRLYNAVIDALVKSNSLDLAYFKFQQ 697
            E++C++IGSWGRLGLAKYC E+FGQIS+LG+SP+TRLYNAVIDALVKSNSLDLAY KFQQ
Sbjct: 183  ELLCILIGSWGRLGLAKYCDEIFGQISFLGISPSTRLYNAVIDALVKSNSLDLAYLKFQQ 242

Query: 698  MPADNCVPDRFTYNILIHGVCKIGIVDEALRLLKQMEGSGYSPNVFTYTILIDGFCNAKR 877
            M ADNC PDRFTYNILIHGVC+ G+VDEALRL+KQMEG GYSPNVFTYTILIDGF NAK+
Sbjct: 243  MSADNCKPDRFTYNILIHGVCRSGVVDEALRLVKQMEGLGYSPNVFTYTILIDGFFNAKK 302

Query: 878  VDEAFQLLETMREKNVAPSEATYRSLVHGVFRCLPLREAYDLFLSFVGREPIMSKHACDT 1057
            VDEAF++LETM+ + V+PSEAT RS +HGVFRC+   +A++L + F+ REP++ + ACDT
Sbjct: 303  VDEAFRVLETMKARKVSPSEATIRSFIHGVFRCVAPNKAFELAIEFIEREPVLQRLACDT 362

Query: 1058 ILICLAKNSLSREAADILRMVGKKGYIPDSATFSILMVCFTKDLNLHETCNIVNGFTEQG 1237
            +L CL+  +++REA  +L+  GK G+ PDSATF+I M C  K  +L+E CNI++ F EQG
Sbjct: 363  LLCCLSSKNMAREAGALLKKFGKIGHKPDSATFNIAMNCLIKGFDLNEVCNILDRFVEQG 422

Query: 1238 GMLGFNTYIALIKALFKAGMVEEGNQYLDEMVHDGLVSSVVSYNMLIDMFCQAEMMEKAF 1417
               GF+TY+ALIKAL+ AG V EGN Y ++MV DGL+ +V SYNM+ID FC+  MM+KA 
Sbjct: 423  MKFGFSTYLALIKALYMAGKVTEGNHYFNQMVKDGLLCNVCSYNMVIDCFCKTSMMDKAT 482

Query: 1418 TTLMEMHRRGVAPNLVTYNTIINGYSKAGQISRVQEILKMLLKHGFKPDKYTFSSIIDGL 1597
             T  EM  +G+ PNLVT+NT+I+GY K G+I + +++L MLL+HGFKPD +TFSSIIDGL
Sbjct: 483  NTFKEMQYKGIPPNLVTFNTLIDGYCKGGEICKSRDLLVMLLEHGFKPDIFTFSSIIDGL 542

Query: 1598 CRANRLEDAFNCFSEMVEWNVIPNVVTYNILIRCLCVVGNVGKSLQLLRQMKANAISPDT 1777
            CRA ++EDA  CFSEMV W + PN VTYNILI  LC++G+V +S++LLR+M+ + I+PD 
Sbjct: 543  CRAKQIEDALGCFSEMVMWGLSPNAVTYNILIHSLCIIGDVPRSMKLLRKMQTDGINPDV 602

Query: 1778 FSFNALIVSLCKMNKIESAQRLFNSMLRLGLSPESYSCNAFIKKMCESGRIDEAKKMVLT 1957
            FSFNALI S C+M K+E A++LF+SML LGL P++Y+  AFIK  C+SGR +EAK++ L+
Sbjct: 603  FSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAFIKVFCQSGRFNEAKELFLS 662

Query: 1958 MEANGHAPDPYAYSLIVD 2011
            MEANG  PD +  ++I+D
Sbjct: 663  MEANGCMPDSFTCNIILD 680



 Score =  105 bits (261), Expect = 7e-20
 Identities = 87/362 (24%), Positives = 146/362 (40%)
 Frame = +2

Query: 584  FGQISYLGLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNILIHGVCK 763
            FG+I   G  P +  +N  ++ L+K   L+       +           TY  LI  +  
Sbjct: 383  FGKI---GHKPDSATFNIAMNCLIKGFDLNEVCNILDRFVEQGMKFGFSTYLALIKALYM 439

Query: 764  IGIVDEALRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVAPSEAT 943
             G V E      QM   G   NV +Y ++ID FC    +D+A    + M+ K + P+  T
Sbjct: 440  AGKVTEGNHYFNQMVKDGLLCNVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGIPPNLVT 499

Query: 944  YRSLVHGVFRCLPLREAYDLFLSFVGREPIMSKHACDTILICLAKNSLSREAADILRMVG 1123
            + +L+ G                            C    IC ++        D+L M+ 
Sbjct: 500  FNTLIDGY---------------------------CKGGEICKSR--------DLLVMLL 524

Query: 1124 KKGYIPDSATFSILMVCFTKDLNLHETCNIVNGFTEQGGMLGFNTYIALIKALFKAGMVE 1303
            + G+ PD  TFS ++    +   + +     +     G      TY  LI +L   G V 
Sbjct: 525  EHGFKPDIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNAVTYNILIHSLCIIGDVP 584

Query: 1304 EGNQYLDEMVHDGLVSSVVSYNMLIDMFCQAEMMEKAFTTLMEMHRRGVAPNLVTYNTII 1483
               + L +M  DG+   V S+N LI  FC+   +E A      M   G+ P+  TY   I
Sbjct: 585  RSMKLLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAFI 644

Query: 1484 NGYSKAGQISRVQEILKMLLKHGFKPDKYTFSSIIDGLCRANRLEDAFNCFSEMVEWNVI 1663
              + ++G+ +  +E+   +  +G  PD +T + I+D L + ++ E A        EW ++
Sbjct: 645  KVFCQSGRFNEAKELFLSMEANGCMPDSFTCNIILDALVKQDQFEAAQKIAKTCSEWGIL 704

Query: 1664 PN 1669
             N
Sbjct: 705  VN 706



 Score = 94.7 bits (234), Expect = 9e-17
 Identities = 54/185 (29%), Positives = 91/185 (49%)
 Frame = +2

Query: 605  GLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNILIHGVCKIGIVDEA 784
            G  P    ++++ID L ++  ++ A   F +M      P+  TYNILIH +C IG V  +
Sbjct: 527  GFKPDIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNAVTYNILIHSLCIIGDVPRS 586

Query: 785  LRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVAPSEATYRSLVHG 964
            ++LL++M+  G +P+VF++  LI  FC   +V++A +L  +M    + P   TY + +  
Sbjct: 587  MKLLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAFIKV 646

Query: 965  VFRCLPLREAYDLFLSFVGREPIMSKHACDTILICLAKNSLSREAADILRMVGKKGYIPD 1144
              +     EA +LFLS      +     C+ IL  L K      A  I +   + G + +
Sbjct: 647  FCQSGRFNEAKELFLSMEANGCMPDSFTCNIILDALVKQDQFEAAQKIAKTCSEWGILVN 706

Query: 1145 SATFS 1159
             A  S
Sbjct: 707  FAAIS 711



 Score = 87.4 bits (215), Expect = 2e-14
 Identities = 67/299 (22%), Positives = 121/299 (40%), Gaps = 7/299 (2%)
 Frame = +2

Query: 377  VSNVQDRLAKDQL-----VHRILGNRLYRNGPVVLSADLIKEVV--GFKCRITEEIVCVM 535
            V N+ DR  +  +      +  L   LY  G V        ++V  G  C +      ++
Sbjct: 411  VCNILDRFVEQGMKFGFSTYLALIKALYMAGKVTEGNHYFNQMVKDGLLCNVCS--YNMV 468

Query: 536  IGSWGRLGLAKYCTEVFGQISYLGLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNC 715
            I  + +  +    T  F ++ Y G+ P    +N +ID   K   +  +      +     
Sbjct: 469  IDCFCKTSMMDKATNTFKEMQYKGIPPNLVTFNTLIDGYCKGGEICKSRDLLVMLLEHGF 528

Query: 716  VPDRFTYNILIHGVCKIGIVDEALRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQ 895
             PD FT++ +I G+C+   +++AL    +M   G SPN  TY ILI   C    V  + +
Sbjct: 529  KPDIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNAVTYNILIHSLCIIGDVPRSMK 588

Query: 896  LLETMREKNVAPSEATYRSLVHGVFRCLPLREAYDLFLSFVGREPIMSKHACDTILICLA 1075
            LL  M+   + P   ++ +L+    R   + +A  LF S +    I   +     +    
Sbjct: 589  LLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAFIKVFC 648

Query: 1076 KNSLSREAADILRMVGKKGYIPDSATFSILMVCFTKDLNLHETCNIVNGFTEQGGMLGF 1252
            ++    EA ++   +   G +PDS T +I++    K         I    +E G ++ F
Sbjct: 649  QSGRFNEAKELFLSMEANGCMPDSFTCNIILDALVKQDQFEAAQKIAKTCSEWGILVNF 707


>ref|XP_004162218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g16890, mitochondrial-like [Cucumis sativus]
          Length = 697

 Score =  729 bits (1882), Expect = 0.0
 Identities = 355/692 (51%), Positives = 498/692 (71%), Gaps = 23/692 (3%)
 Frame = +2

Query: 5    MRGFSSISSKPSPCTKTLTQKISIPYNR-KKPISNDASKLTS-------LKAPVTG---- 148
            MRGF S + + +P  +    +   P N+ ++ + +++ + TS       L+AP  G    
Sbjct: 1    MRGFPSSAFRATPVLRNRPLQAYTPINKHRRQLPSNSIQRTSKQSPFNNLEAPSRGNPSP 60

Query: 149  -----KSPFNLSNNR---ILPNVHKLPVNVIEHSYLSEILARNDWFYLLNHEFEAKRTSL 304
                 K+P ++  +    +  + H L +  I+ SY+S+IL   DWF LLNHEF+AKR  L
Sbjct: 61   LTTPLKAPSSIQLSTPPSLADDKHSLSLKPIDRSYISKILLSKDWFLLLNHEFKAKRVVL 120

Query: 305  NQQYVVRVLQNEENALSCVRFYVWVSNVQDRLAKDQLVHRILGNRLYRNGP---VVLSAD 475
            + Q+VV +LQN++N LS +RFY+WVSNV   L K QL+  +L   L+R GP   V+LS D
Sbjct: 121  SPQFVVSILQNQDNPLSAIRFYIWVSNVDPLLVKKQLIQGVLVRNLHREGPDRPVLLSVD 180

Query: 476  LIKEVVGFKCRITEEIVCVMIGSWGRLGLAKYCTEVFGQISYLGLSPTTRLYNAVIDALV 655
            L++++     ++TEE++C++ GSWGRLGLA YC EVFGQI  LGL+PTTRLYNAV+DAL+
Sbjct: 181  LLQQIKESGLKVTEELLCILFGSWGRLGLANYCVEVFGQIGLLGLNPTTRLYNAVMDALI 240

Query: 656  KSNSLDLAYFKFQQMPADNCVPDRFTYNILIHGVCKIGIVDEALRLLKQMEGSGYSPNVF 835
            KSNSLDLAY KFQQM + NCVPDRFTYNILIHGVC++G+VDEALRL+KQMEG GY PNVF
Sbjct: 241  KSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGVVDEALRLMKQMEGLGYFPNVF 300

Query: 836  TYTILIDGFCNAKRVDEAFQLLETMREKNVAPSEATYRSLVHGVFRCLPLREAYDLFLSF 1015
            TYTILIDGF NAKR  EAF++L+TM+E+NV P+EAT RSLVHGVFRC+   +A++L L F
Sbjct: 301  TYTILIDGFFNAKRAGEAFKVLQTMKERNVVPNEATMRSLVHGVFRCIAPDKAFELLLEF 360

Query: 1016 VGREPIMSKHACDTILICLAKNSLSREAADILRMVGKKGYIPDSATFSILMVCFTKDLNL 1195
            V R+  +++  CD IL CL+ NS++ EA   L   GK+GY+P S+TF+I + C  K L+L
Sbjct: 361  VERKQGITQLVCDNILYCLSNNSMASEAVMFLIKTGKEGYVPSSSTFNITLACVLKKLDL 420

Query: 1196 HETCNIVNGFTEQGGMLGFNTYIALIKALFKAGMVEEGNQYLDEMVHDGLVSSVVSYNML 1375
              TC + +   + G   GF+TY+ LI+AL+KAG +E GN+Y+D +++DGL+S++ SYNM+
Sbjct: 421  KVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAGKMEIGNRYMDRLINDGLISNIYSYNMV 480

Query: 1376 IDMFCQAEMMEKAFTTLMEMHRRGVAPNLVTYNTIINGYSKAGQISRVQEILKMLLKHGF 1555
            ID  C+ + M++A     ++H RG++PN+VTYNT+I G+ + G + + QE+L+MLL+  F
Sbjct: 481  IDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLEMLLESRF 540

Query: 1556 KPDKYTFSSIIDGLCRANRLEDAFNCFSEMVEWNVIPNVVTYNILIRCLCVVGNVGKSLQ 1735
            +PD +TF+S+IDGLC+A++ E+AF CF+EMVEW+V PNV+TYNILI   C +G+V +S  
Sbjct: 541  RPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNVITYNILICSFCAIGDVSRSTH 600

Query: 1736 LLRQMKANAISPDTFSFNALIVSLCKMNKIESAQRLFNSMLRLGLSPESYSCNAFIKKMC 1915
            LLRQMK + I PDTFSFNALI      N+ + A++LF+SMLRLG+ P++Y+  A IK +C
Sbjct: 601  LLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQPDNYTYGALIKSLC 660

Query: 1916 ESGRIDEAKKMVLTMEANGHAPDPYAYSLIVD 2011
            +SGR D+A+++ L+M+ NG  PD Y  SL  D
Sbjct: 661  KSGRHDKAREIFLSMKENGCTPDSYTCSLFSD 692


>ref|XP_004134500.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g16890, mitochondrial-like
            [Cucumis sativus]
          Length = 688

 Score =  710 bits (1832), Expect = 0.0
 Identities = 349/692 (50%), Positives = 491/692 (70%), Gaps = 23/692 (3%)
 Frame = +2

Query: 5    MRGFSSISSKPSPCTKTLTQKISIPYNR-KKPISNDASKLTS-------LKAPVTG---- 148
            MRGF S + + +P  +    +   P N+ ++ + +++ + TS       L+AP  G    
Sbjct: 1    MRGFPSSAFRATPVLRNRPLQAYTPINKHRRQLPSNSIQRTSKQSPFNNLEAPSRGNPSP 60

Query: 149  -----KSPFNLSNNR---ILPNVHKLPVNVIEHSYLSEILARNDWFYLLNHEFEAKRTSL 304
                 K+P ++  +    +  + H L +  I+ SY+S+IL   DWF LLNHEF+AKR  L
Sbjct: 61   LTTPLKAPSSIQLSTPPSLADDKHSLSLKPIDRSYISKILLSKDWFLLLNHEFKAKRVVL 120

Query: 305  NQQYVVRVLQNEENALSCVRFYVWVSNVQDRLAKDQLVHRILGNRLYRNGP---VVLSAD 475
            + Q+VV +LQN++N LS +RFY+WVSNV   L K QL+  +L   L+R GP   V+LS D
Sbjct: 121  SPQFVVSILQNQDNPLSAIRFYIWVSNVDPLLVKKQLIQGVLVRNLHREGPDRPVLLSVD 180

Query: 476  LIKEVVGFKCRITEEIVCVMIGSWGRLGLAKYCTEVFGQISYLGLSPTTRLYNAVIDALV 655
            L++++     ++TEE++C++ GSWGRLGLA YC EVFGQI  LGL+PTTRLYNAV+DAL+
Sbjct: 181  LLQQIKESGLKVTEELLCILFGSWGRLGLANYCVEVFGQIGLLGLNPTTRLYNAVMDALI 240

Query: 656  KSNSLDLAYFKFQQMPADNCVPDRFTYNILIHGVCKIGIVDEALRLLKQMEGSGYSPNVF 835
            KSNSLDLAY KFQQM + NCVPDRFTYNILIHGVC++G+VDEALRL+KQMEG GY PNVF
Sbjct: 241  KSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGVVDEALRLMKQMEGLGYFPNVF 300

Query: 836  TYTILIDGFCNAKRVDEAFQLLETMREKNVAPSEATYRSLVHGVFRCLPLREAYDLFLSF 1015
            TYTILIDGF NAKR  E F++L+TM+E+NV P+EAT RSLVHGVFRC+   +A++L L F
Sbjct: 301  TYTILIDGFFNAKRAGETFKVLQTMKERNVVPNEATMRSLVHGVFRCIAPDKAFELLLEF 360

Query: 1016 VGREPIMSKHACDTILICLAKNSLSREAADILRMVGKKGYIPDSATFSILMVCFTKDLNL 1195
            V R+  +++  CD IL CL+ NS++ EA           + P S+TF+I + C  K L+L
Sbjct: 361  VERKQGITQLVCDNILYCLSNNSMASEAVM---------FXPSSSTFNITLACVLKKLDL 411

Query: 1196 HETCNIVNGFTEQGGMLGFNTYIALIKALFKAGMVEEGNQYLDEMVHDGLVSSVVSYNML 1375
              TC + +   + G   GF+TY+ LI+AL+KAG +E GN+Y+D +++DGL+S++ SYNM+
Sbjct: 412  KVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAGKMEIGNRYMDRLINDGLISNIYSYNMV 471

Query: 1376 IDMFCQAEMMEKAFTTLMEMHRRGVAPNLVTYNTIINGYSKAGQISRVQEILKMLLKHGF 1555
            ID  C+ + M++A     ++H RG++PN+VTYNT+I G+ + G + + QE+L+MLL+  F
Sbjct: 472  IDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLEMLLESRF 531

Query: 1556 KPDKYTFSSIIDGLCRANRLEDAFNCFSEMVEWNVIPNVVTYNILIRCLCVVGNVGKSLQ 1735
            +PD +TF+S+IDGLC+A++ E+AF CF+EMVEW+V PNV+TYNILI   C +G+V +S  
Sbjct: 532  RPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNVITYNILICSFCAIGDVSRSTH 591

Query: 1736 LLRQMKANAISPDTFSFNALIVSLCKMNKIESAQRLFNSMLRLGLSPESYSCNAFIKKMC 1915
            LLRQMK + I PDTFSFNALI      N+ + A++LF+SMLRLG+ P++Y+  A IK +C
Sbjct: 592  LLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQPDNYTYGALIKSLC 651

Query: 1916 ESGRIDEAKKMVLTMEANGHAPDPYAYSLIVD 2011
            +SGR D+A+++ L+M+ NG  PD Y  SL  D
Sbjct: 652  KSGRHDKAREIFLSMKENGCTPDSYTCSLFSD 683



 Score = 94.0 bits (232), Expect = 2e-16
 Identities = 78/339 (23%), Positives = 136/339 (40%), Gaps = 8/339 (2%)
 Frame = +2

Query: 614  PTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNILIHGVCKIGIVDEALRL 793
            P++  +N  +  ++K   L +    F         P   TY  LI  + K G ++   R 
Sbjct: 393  PSSSTFNITLACVLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAGKMEIGNRY 452

Query: 794  LKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVAPSEATYRSLVHGVFR 973
            + ++   G   N+++Y ++ID  C  K +D A ++   +  + ++P+  TY +L+ G  R
Sbjct: 453  MDRLINDGLISNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCR 512

Query: 974  CLPLREAYDLFLSFVGREPIMSKHACDTILICLAKNSLSREAADILRMVGKKGYIPDSAT 1153
                                               N    +A ++L M+ +  + PD  T
Sbjct: 513  -----------------------------------NGNMDKAQELLEMLLESRFRPDIFT 537

Query: 1154 FSILM--VCFTKDLNLHETCNIVNGFTEQGGMLGFN------TYIALIKALFKAGMVEEG 1309
            F+ L+  +C       H+  N    FTE   M+ ++      TY  LI +    G V   
Sbjct: 538  FNSLIDGLC-----QAHKHENAFGCFTE---MVEWDVPPNVITYNILICSFCAIGDVSRS 589

Query: 1310 NQYLDEMVHDGLVSSVVSYNMLIDMFCQAEMMEKAFTTLMEMHRRGVAPNLVTYNTIING 1489
               L +M   G+     S+N LI  +      +KA      M R G+ P+  TY  +I  
Sbjct: 590  THLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQPDNYTYGALIKS 649

Query: 1490 YSKAGQISRVQEILKMLLKHGFKPDKYTFSSIIDGLCRA 1606
              K+G+  + +EI   + ++G  PD YT S   D L  +
Sbjct: 650  LCKSGRHDKAREIFLSMKENGCTPDSYTCSLFSDTLAHS 688


>ref|XP_003530549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g16890, mitochondrial-like [Glycine max]
          Length = 678

 Score =  668 bits (1723), Expect = 0.0
 Identities = 318/603 (52%), Positives = 439/603 (72%), Gaps = 5/603 (0%)
 Frame = +2

Query: 215  IEHSYLSEILARNDWFYLLNHEFEAKRTSLNQQYVVRVLQNEENALSCVRFYVWVSNVQD 394
            I+H Y+S++L+R DW  LLNH+  +K   LN  Y V + QN++N    ++F+ W+S+V  
Sbjct: 44   IDHLYISQLLSRPDWAVLLNHDLSSKTLLLNPSYAVSIFQNQQNPSHAIKFHSWLSHVNP 103

Query: 395  RLAKDQLVHRILGNRLYRNGPVVLSADLIKEVVGFKCRITEEIVCVMIGSWGRLGLAKYC 574
             LA    VHR L N L+R GP +LS DL++E+     R+TE+++C ++ SWGRLGLA Y 
Sbjct: 104  TLAAHNSVHRALRNTLHRKGPALLSVDLLRELRNLGFRVTEDLLCALLASWGRLGLANYS 163

Query: 575  TEVFGQISYLGLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNILIHG 754
              VF QIS+LGLSPTTRLYNA+IDALVKSNS+DLAY KFQQM ADNCV DRFTYN LIHG
Sbjct: 164  AHVFCQISFLGLSPTTRLYNALIDALVKSNSIDLAYLKFQQMAADNCVADRFTYNTLIHG 223

Query: 755  VCKIGIVDEALRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVAPS 934
            VCK+G+VDEALRL++QM+  G+ PNVFTYT+LI+GFC A RVDEAF + ETM++  V P+
Sbjct: 224  VCKVGVVDEALRLVRQMKDKGHFPNVFTYTMLIEGFCIASRVDEAFGVFETMKDSGVYPN 283

Query: 935  EATYRSLVHGVFRCLPLREAYDLFLSFVGREPIMSK----HACDTILICLAKNSLSREAA 1102
            EAT R+LVHGVFRC+   +A +L   F+ RE    +     ACDT+L CLA NS+++E  
Sbjct: 284  EATVRALVHGVFRCVDPSKALELLSEFLDREQEQERVHFMLACDTVLYCLANNSMAKEMV 343

Query: 1103 DILRMV-GKKGYIPDSATFSILMVCFTKDLNLHETCNIVNGFTEQGGMLGFNTYIALIKA 1279
              LR V G+ GY P ++ F+++M C  K   L ETC++     +QG   G   Y+ALI+ 
Sbjct: 344  VFLRRVLGRGGYFPGNSVFNVVMACLVKGAELRETCDVFEILRKQGVKAGIGAYLALIEV 403

Query: 1280 LFKAGMVEEGNQYLDEMVHDGLVSSVVSYNMLIDMFCQAEMMEKAFTTLMEMHRRGVAPN 1459
            L+K    EEG++   +++ DGL+S+V SYNM+I+ FC+A++M+ A     +M  RGV PN
Sbjct: 404  LYKNEWREEGDRVYGQLISDGLISNVFSYNMIINCFCRAKLMDNASEAFRDMQVRGVVPN 463

Query: 1460 LVTYNTIINGYSKAGQISRVQEILKMLLKHGFKPDKYTFSSIIDGLCRANRLEDAFNCFS 1639
            LVT+NT+ING+ K G I + +++L+ LL++G KPD +TFSSI+DGLC+  R E+A  CF+
Sbjct: 464  LVTFNTLINGHCKDGAIDKARKLLESLLENGLKPDIFTFSSIVDGLCQIKRTEEALECFT 523

Query: 1640 EMVEWNVIPNVVTYNILIRCLCVVGNVGKSLQLLRQMKANAISPDTFSFNALIVSLCKMN 1819
            EM+EW + PN V YNILIR LC +G+V +S++LLR+M+   ISPDT+S+NALI   C+MN
Sbjct: 524  EMIEWGINPNAVIYNILIRSLCTIGDVARSVKLLRRMQKEGISPDTYSYNALIQIFCRMN 583

Query: 1820 KIESAQRLFNSMLRLGLSPESYSCNAFIKKMCESGRIDEAKKMVLTMEANGHAPDPYAYS 1999
            K+E A++LF+SM R GL+P++Y+ +AFI+ + ESGR++EAKKM  +MEANG +PD Y  +
Sbjct: 584  KVEKAKKLFDSMSRSGLNPDNYTYSAFIEALSESGRLEEAKKMFYSMEANGCSPDSYICN 643

Query: 2000 LIV 2008
            LI+
Sbjct: 644  LII 646



 Score =  113 bits (283), Expect = 2e-22
 Identities = 87/373 (23%), Positives = 162/373 (43%), Gaps = 17/373 (4%)
 Frame = +2

Query: 398  LAKDQLV--HRILGNRLYRNGPVVLSADLIKEVVGFKCRITEEIVCVMIGSWGRLGLAKY 571
            +AK+ +V   R+LG   Y  G  V +  +   V G + R T ++  ++     + G+  Y
Sbjct: 338  MAKEMVVFLRRVLGRGGYFPGNSVFNVVMACLVKGAELRETCDVFEILRKQGVKAGIGAY 397

Query: 572  CT---------------EVFGQISYLGLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPA 706
                              V+GQ+   GL      YN +I+   ++  +D A   F+ M  
Sbjct: 398  LALIEVLYKNEWREEGDRVYGQLISDGLISNVFSYNMIINCFCRAKLMDNASEAFRDMQV 457

Query: 707  DNCVPDRFTYNILIHGVCKIGIVDEALRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDE 886
               VP+  T+N LI+G CK G +D+A +LL+ +  +G  P++FT++ ++DG C  KR +E
Sbjct: 458  RGVVPNLVTFNTLINGHCKDGAIDKARKLLESLLENGLKPDIFTFSSIVDGLCQIKRTEE 517

Query: 887  AFQLLETMREKNVAPSEATYRSLVHGVFRCLPLREAYDLFLSFVGREPIMSKHACDTILI 1066
            A +    M E  + P+   Y  L+  +             +  V R              
Sbjct: 518  ALECFTEMIEWGINPNAVIYNILIRSLCT-----------IGDVAR-------------- 552

Query: 1067 CLAKNSLSREAADILRMVGKKGYIPDSATFSILMVCFTKDLNLHETCNIVNGFTEQGGML 1246
                      +  +LR + K+G  PD+ +++ L+  F +   + +   + +  +  G   
Sbjct: 553  ----------SVKLLRRMQKEGISPDTYSYNALIQIFCRMNKVEKAKKLFDSMSRSGLNP 602

Query: 1247 GFNTYIALIKALFKAGMVEEGNQYLDEMVHDGLVSSVVSYNMLIDMFCQAEMMEKAFTTL 1426
               TY A I+AL ++G +EE  +    M  +G        N++I +  Q E +E+A   +
Sbjct: 603  DNYTYSAFIEALSESGRLEEAKKMFYSMEANGCSPDSYICNLIIKILVQQEYVEEAQNII 662

Query: 1427 MEMHRRGVAPNLV 1465
                ++G++ N +
Sbjct: 663  ERCRQKGISLNSI 675


>ref|NP_188314.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75274022|sp|Q9LSQ2.1|PP239_ARATH RecName:
            Full=Putative pentatricopeptide repeat-containing protein
            At3g16890, mitochondrial; AltName: Full=Protein
            PENTATRICOPEPTIDE REPEAT 40; Flags: Precursor
            gi|7670019|dbj|BAA94973.1| salt-inducible protein-like
            [Arabidopsis thaliana] gi|332642359|gb|AEE75880.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            thaliana]
          Length = 659

 Score =  663 bits (1711), Expect = 0.0
 Identities = 315/601 (52%), Positives = 430/601 (71%)
 Frame = +2

Query: 203  PVNVIEHSYLSEILARNDWFYLLNHEFEAKRTSLNQQYVVRVLQNEENALSCVRFYVWVS 382
            P N +   Y+S+++ R DWF +LN EF   R  LN ++V+ VLQN++N L  +RFY+WVS
Sbjct: 41   PTNPLNQRYISQVIERKDWFLILNQEFTTHRIGLNTRFVISVLQNQDNPLHSLRFYLWVS 100

Query: 383  NVQDRLAKDQLVHRILGNRLYRNGPVVLSADLIKEVVGFKCRITEEIVCVMIGSWGRLGL 562
            N     AKDQ +  +LGN L+R GP++LS +L+KE+     RI++E++CV+IGSWGRLGL
Sbjct: 101  NFDPVYAKDQSLKSVLGNALFRKGPLLLSMELLKEIRDSGYRISDELMCVLIGSWGRLGL 160

Query: 563  AKYCTEVFGQISYLGLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNI 742
            AKYC +VF QIS+LG+ P+TRLYNAVIDALVKSNSLDLAY KFQQM +D C PDRFTYNI
Sbjct: 161  AKYCNDVFAQISFLGMKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNI 220

Query: 743  LIHGVCKIGIVDEALRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKN 922
            LIHGVCK G+VDEA+RL+KQME  G  PNVFTYTILIDGF  A RVDEA + LE MR + 
Sbjct: 221  LIHGVCKKGVVDEAIRLVKQMEQEGNRPNVFTYTILIDGFLIAGRVDEALKQLEMMRVRK 280

Query: 923  VAPSEATYRSLVHGVFRCLPLREAYDLFLSFVGREPIMSKHACDTILICLAKNSLSREAA 1102
            + P+EAT R+ VHG+FRCLP  +A+++ + F+ ++  + +   D +L CL+ NS+++E  
Sbjct: 281  LNPNEATIRTFVHGIFRCLPPCKAFEVLVGFMEKDSNLQRVGYDAVLYCLSNNSMAKETG 340

Query: 1103 DILRMVGKKGYIPDSATFSILMVCFTKDLNLHETCNIVNGFTEQGGMLGFNTYIALIKAL 1282
              LR +G++GYIPDS+TF+  M C  K  +L ETC I +GF  +G   GFN Y+ L++AL
Sbjct: 341  QFLRKIGERGYIPDSSTFNAAMSCLLKGHDLVETCRIFDGFVSRGVKPGFNGYLVLVQAL 400

Query: 1283 FKAGMVEEGNQYLDEMVHDGLVSSVVSYNMLIDMFCQAEMMEKAFTTLMEMHRRGVAPNL 1462
              A    EG++YL +M  DGL+SSV SYN +ID  C+A  +E A   L EM  RG++PNL
Sbjct: 401  LNAQRFSEGDRYLKQMGVDGLLSSVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNL 460

Query: 1463 VTYNTIINGYSKAGQISRVQEILKMLLKHGFKPDKYTFSSIIDGLCRANRLEDAFNCFSE 1642
            VT+NT ++GYS  G + +V  +L+ LL HGFKPD  TFS II+ LCRA  ++DAF+CF E
Sbjct: 461  VTFNTFLSGYSVRGDVKKVHGVLEKLLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKE 520

Query: 1643 MVEWNVIPNVVTYNILIRCLCVVGNVGKSLQLLRQMKANAISPDTFSFNALIVSLCKMNK 1822
            M+EW + PN +TYNILIR  C  G+  +S++L  +MK N +SPD +++NA I S CKM K
Sbjct: 521  MLEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQSFCKMRK 580

Query: 1823 IESAQRLFNSMLRLGLSPESYSCNAFIKKMCESGRIDEAKKMVLTMEANGHAPDPYAYSL 2002
            ++ A+ L  +MLR+GL P++++ +  IK + ESGR  EA++M  ++E +G  PD Y   L
Sbjct: 581  VKKAEELLKTMLRIGLKPDNFTYSTLIKALSESGRESEAREMFSSIERHGCVPDSYTKRL 640

Query: 2003 I 2005
            +
Sbjct: 641  V 641



 Score =  100 bits (250), Expect = 1e-18
 Identities = 85/377 (22%), Positives = 159/377 (42%), Gaps = 2/377 (0%)
 Frame = +2

Query: 887  AFQLLETMREKNVAPSEATYRSLVHGVFRCLPLREAYDLF--LSFVGREPIMSKHACDTI 1060
            + +LL+ +R+     S+     L+    R    +   D+F  +SF+G +P  S    + +
Sbjct: 129  SMELLKEIRDSGYRISDELMCVLIGSWGRLGLAKYCNDVFAQISFLGMKP--STRLYNAV 186

Query: 1061 LICLAKNSLSREAADILRMVGKKGYIPDSATFSILMVCFTKDLNLHETCNIVNGFTEQGG 1240
            +  L K++    A    + +   G  PD  T++IL+    K   + E   +V    ++G 
Sbjct: 187  IDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQEGN 246

Query: 1241 MLGFNTYIALIKALFKAGMVEEGNQYLDEMVHDGLVSSVVSYNMLIDMFCQAEMMEKAFT 1420
                 TY  LI     AG V+E  + L+ M    L  +  +    +    +     KAF 
Sbjct: 247  RPNVFTYTILIDGFLIAGRVDEALKQLEMMRVRKLNPNEATIRTFVHGIFRCLPPCKAFE 306

Query: 1421 TLMEMHRRGVAPNLVTYNTIINGYSKAGQISRVQEILKMLLKHGFKPDKYTFSSIIDGLC 1600
             L+    +      V Y+ ++   S         + L+ + + G+ PD  TF++ +  L 
Sbjct: 307  VLVGFMEKDSNLQRVGYDAVLYCLSNNSMAKETGQFLRKIGERGYIPDSSTFNAAMSCLL 366

Query: 1601 RANRLEDAFNCFSEMVEWNVIPNVVTYNILIRCLCVVGNVGKSLQLLRQMKANAISPDTF 1780
            + + L +    F   V   V P    Y +L++ L       +  + L+QM  + +    +
Sbjct: 367  KGHDLVETCRIFDGFVSRGVKPGFNGYLVLVQALLNAQRFSEGDRYLKQMGVDGLLSSVY 426

Query: 1781 SFNALIVSLCKMNKIESAQRLFNSMLRLGLSPESYSCNAFIKKMCESGRIDEAKKMVLTM 1960
            S+NA+I  LCK  +IE+A      M   G+SP   + N F+      G + +   ++  +
Sbjct: 427  SYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSGYSVRGDVKKVHGVLEKL 486

Query: 1961 EANGHAPDPYAYSLIVD 2011
              +G  PD   +SLI++
Sbjct: 487  LVHGFKPDVITFSLIIN 503



 Score = 97.4 bits (241), Expect = 1e-17
 Identities = 76/329 (23%), Positives = 148/329 (44%), Gaps = 6/329 (1%)
 Frame = +2

Query: 1043 HACDTILICLAKNSLSRE-----AADILRMVGKKGYIPDSATFSILMVCFTKDLNLHETC 1207
            +A D  L  +  N+L R+     + ++L+ +   GY        +L+  + + L L + C
Sbjct: 106  YAKDQSLKSVLGNALFRKGPLLLSMELLKEIRDSGYRISDELMCVLIGSWGR-LGLAKYC 164

Query: 1208 NIVNGFTEQGGML-GFNTYIALIKALFKAGMVEEGNQYLDEMVHDGLVSSVVSYNMLIDM 1384
            N V       GM      Y A+I AL K+  ++       +M  DG      +YN+LI  
Sbjct: 165  NDVFAQISFLGMKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIHG 224

Query: 1385 FCQAEMMEKAFTTLMEMHRRGVAPNLVTYNTIINGYSKAGQISRVQEILKMLLKHGFKPD 1564
             C+  ++++A   + +M + G  PN+ TY  +I+G+  AG++    + L+M+      P+
Sbjct: 225  VCKKGVVDEAIRLVKQMEQEGNRPNVFTYTILIDGFLIAGRVDEALKQLEMMRVRKLNPN 284

Query: 1565 KYTFSSIIDGLCRANRLEDAFNCFSEMVEWNVIPNVVTYNILIRCLCVVGNVGKSLQLLR 1744
            + T  + + G+ R      AF      +E +     V Y+ ++ CL       ++ Q LR
Sbjct: 285  EATIRTFVHGIFRCLPPCKAFEVLVGFMEKDSNLQRVGYDAVLYCLSNNSMAKETGQFLR 344

Query: 1745 QMKANAISPDTFSFNALIVSLCKMNKIESAQRLFNSMLRLGLSPESYSCNAFIKKMCESG 1924
            ++      PD+ +FNA +  L K + +    R+F+  +  G+ P        ++ +  + 
Sbjct: 345  KIGERGYIPDSSTFNAAMSCLLKGHDLVETCRIFDGFVSRGVKPGFNGYLVLVQALLNAQ 404

Query: 1925 RIDEAKKMVLTMEANGHAPDPYAYSLIVD 2011
            R  E  + +  M  +G     Y+Y+ ++D
Sbjct: 405  RFSEGDRYLKQMGVDGLLSSVYSYNAVID 433