BLASTX nr result
ID: Coptis25_contig00019808
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00019808 (587 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containi... 309 3e-82 ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containi... 301 5e-80 ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containi... 291 6e-77 ref|XP_002322810.1| predicted protein [Populus trichocarpa] gi|2... 286 2e-75 ref|XP_002879907.1| pentatricopeptide repeat-containing protein ... 280 2e-73 >ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080 [Vitis vinifera] Length = 657 Score = 309 bits (791), Expect = 3e-82 Identities = 147/195 (75%), Positives = 170/195 (87%) Frame = -3 Query: 585 LLGRAGCLDEAEALIKSMPIKPDSIIWKTLLSACKIHKNTEMARRVAENVLRLDPQDAVP 406 LLGR G ++EAEALI+SMP+K D I WKTLLSACKIHK TEMARR++E V RLDP+D VP Sbjct: 431 LLGRYGSVEEAEALIRSMPVKADVITWKTLLSACKIHKKTEMARRISEEVFRLDPRDPVP 490 Query: 405 YVLLSNIHASTKGWGDVSEMRKTMRDKNVKKEPGISWLEVKNQVHQFRVGDKSHPKWLEI 226 YVLLSNIHAS K W DVS++RK MRD+ +KKEPGISWLEVKNQ+HQF +GDKSHPK +EI Sbjct: 491 YVLLSNIHASDKRWDDVSDVRKAMRDRKLKKEPGISWLEVKNQIHQFCMGDKSHPKSVEI 550 Query: 225 DEYLKELTSEMRKRGYVPDTNSVLHDMDIEEKEYHLAHHSEKLAIAFALLSTTSGAPIRV 46 YL+ELTSEM+KRGYVPD +SVLHDMD+E+KEY L HHSEKLAIAFALL T G PIRV Sbjct: 551 ASYLRELTSEMKKRGYVPDIDSVLHDMDVEDKEYSLVHHSEKLAIAFALLYTPVGTPIRV 610 Query: 45 MKNMRVCNDCHLAIK 1 +KN+RVC+DCH+AIK Sbjct: 611 IKNLRVCSDCHVAIK 625 >ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080-like [Glycine max] Length = 674 Score = 301 bits (771), Expect = 5e-80 Identities = 140/195 (71%), Positives = 174/195 (89%) Frame = -3 Query: 585 LLGRAGCLDEAEALIKSMPIKPDSIIWKTLLSACKIHKNTEMARRVAENVLRLDPQDAVP 406 LLGR+GCL+EAEA+I+SMP+K D+IIWKTLLSACKIHKN E+ARRVA+ VLR+DPQD+ Sbjct: 448 LLGRSGCLEEAEAMIRSMPVKADAIIWKTLLSACKIHKNAEIARRVADEVLRIDPQDSAS 507 Query: 405 YVLLSNIHASTKGWGDVSEMRKTMRDKNVKKEPGISWLEVKNQVHQFRVGDKSHPKWLEI 226 YVLL+NI++S W +VSE+R+ M+DK VKKEPGISW+EVKNQVHQF +GD+ HPK +EI Sbjct: 508 YVLLANIYSSANRWQNVSEVRRAMKDKMVKKEPGISWVEVKNQVHQFHMGDECHPKHVEI 567 Query: 225 DEYLKELTSEMRKRGYVPDTNSVLHDMDIEEKEYHLAHHSEKLAIAFALLSTTSGAPIRV 46 ++YL+ELTSE++++GYVPDT+SVLHDMD EEKE L HHSEKLAIAFAL++T G PIRV Sbjct: 568 NQYLEELTSEIKRQGYVPDTSSVLHDMDNEEKEQILRHHSEKLAIAFALMNTPEGVPIRV 627 Query: 45 MKNMRVCNDCHLAIK 1 MKN+RVC+DCH+AIK Sbjct: 628 MKNLRVCSDCHVAIK 642 >ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080-like [Cucumis sativus] gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080-like [Cucumis sativus] Length = 667 Score = 291 bits (745), Expect = 6e-77 Identities = 134/195 (68%), Positives = 167/195 (85%) Frame = -3 Query: 585 LLGRAGCLDEAEALIKSMPIKPDSIIWKTLLSACKIHKNTEMARRVAENVLRLDPQDAVP 406 LLGRAG L+EAE +I+SMP++PD IIWKTLL+ACK+HK EMA R++E +++LDP DA Sbjct: 441 LLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACKLHKEAEMAERISEEIIKLDPLDAAS 500 Query: 405 YVLLSNIHASTKGWGDVSEMRKTMRDKNVKKEPGISWLEVKNQVHQFRVGDKSHPKWLEI 226 YVLLSNIHAS + W +VS++RK MRD++V+KEPGISWLE+KN VHQF +GDKSHP++ EI Sbjct: 501 YVLLSNIHASARNWLNVSQIRKAMRDRSVRKEPGISWLELKNLVHQFSMGDKSHPQYFEI 560 Query: 225 DEYLKELTSEMRKRGYVPDTNSVLHDMDIEEKEYHLAHHSEKLAIAFALLSTTSGAPIRV 46 D YLKEL SE+++ GYVP+ SVLHDMD EEKEY+LAHHSEK AIAFAL++T+ PIRV Sbjct: 561 DLYLKELMSELKQHGYVPELGSVLHDMDNEEKEYNLAHHSEKFAIAFALMNTSENVPIRV 620 Query: 45 MKNMRVCNDCHLAIK 1 MKN+RVC+DCH AIK Sbjct: 621 MKNLRVCDDCHNAIK 635 >ref|XP_002322810.1| predicted protein [Populus trichocarpa] gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa] Length = 562 Score = 286 bits (731), Expect = 2e-75 Identities = 135/195 (69%), Positives = 163/195 (83%) Frame = -3 Query: 585 LLGRAGCLDEAEALIKSMPIKPDSIIWKTLLSACKIHKNTEMARRVAENVLRLDPQDAVP 406 LLGR+GCLDEAEA+I+SMP++ D +IWKTLLSAC+IH+N +MA R AE +LRL+PQD+ Sbjct: 336 LLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNADMATRTAEEILRLNPQDSAT 395 Query: 405 YVLLSNIHASTKGWGDVSEMRKTMRDKNVKKEPGISWLEVKNQVHQFRVGDKSHPKWLEI 226 YVLLSNIHAS K W DVS++R TMRD+NVKKEPG+SWLEVKN+V QF +GDKSHP EI Sbjct: 396 YVLLSNIHASAKRWKDVSKVRTTMRDRNVKKEPGVSWLEVKNRVFQFSMGDKSHPMSEEI 455 Query: 225 DEYLKELTSEMRKRGYVPDTNSVLHDMDIEEKEYHLAHHSEKLAIAFALLSTTSGAPIRV 46 D YLKEL EM+ RGYVPDT +V HD D EEKE L +HSEKLAIAF L++ G+PIRV Sbjct: 456 DLYLKELMEEMKLRGYVPDTATVFHDTDSEEKENSLVNHSEKLAIAFGLMNIPPGSPIRV 515 Query: 45 MKNMRVCNDCHLAIK 1 MKN+R+C+DCH+AIK Sbjct: 516 MKNLRICSDCHVAIK 530 >ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 565 Score = 280 bits (715), Expect = 2e-73 Identities = 133/195 (68%), Positives = 159/195 (81%) Frame = -3 Query: 585 LLGRAGCLDEAEALIKSMPIKPDSIIWKTLLSACKIHKNTEMARRVAENVLRLDPQDAVP 406 LLGRAGCLD+AEA+IKSMPIKPD +IWKTLLSAC IHKN EMA++V + +L +DP D+ Sbjct: 339 LLGRAGCLDQAEAIIKSMPIKPDPVIWKTLLSACNIHKNAEMAQKVFKEILEIDPNDSAC 398 Query: 405 YVLLSNIHASTKGWGDVSEMRKTMRDKNVKKEPGISWLEVKNQVHQFRVGDKSHPKWLEI 226 YVLL+N+HAS K W DVSE+RK+MRDKNVKKE GISW E K +VHQF++GD+S K EI Sbjct: 399 YVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEI 458 Query: 225 DEYLKELTSEMRKRGYVPDTNSVLHDMDIEEKEYHLAHHSEKLAIAFALLSTTSGAPIRV 46 YLKELT EM+ +GY PDT SVLHDMD EEKE L HSEKLA+AFAL+ GAPIR+ Sbjct: 459 YSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRI 518 Query: 45 MKNMRVCNDCHLAIK 1 +KN+RVC+DCH+A K Sbjct: 519 IKNLRVCSDCHVAFK 533