BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00019804
         (850 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga...   202   1e-49
gb|ABD33126.2| RNA-directed DNA polymerase (Reverse transcriptas...   201   2e-49
ref|XP_002454941.1| hypothetical protein SORBIDRAFT_03g001780 [S...   198   1e-48
emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulga...   195   1e-47
gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa ...   194   2e-47

>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1369

 Score =  202 bits (513), Expect = 1e-49
 Identities = 107/274 (39%), Positives = 156/274 (56%)
 Frame = +2

Query: 29   EEKKFIHGVKVGRKCPPVSHLLFADDSFVFFRANLSEAGHVKDLLDLYCAFSGQSINNQK 208
            EEKK IHGVK+G +  P+SHL FADDS +F RA   E  +V D+L  Y A SGQ +N +K
Sbjct: 668  EEKKVIHGVKIGHRVSPISHLFFADDSLLFIRATEEEVENVMDILSTYEAASGQKLNMEK 727

Query: 209  SSLTFSHNLPRRTKKLISDVLNIPVSSRESKYLGIPTNPSKPSKLSFNHIIDRVSSKIEG 388
            S +++S NL       +   L         KYLG+PT      K  F  I DRV  K++G
Sbjct: 728  SEMSYSRNLEPDKINTLQMKLAFKTVEGHEKYLGLPTFIGSSKKRVFQAIQDRVWKKLKG 787

Query: 389  WHSKCLSQAGKLTLIKSVSSAIPTFSMSTFLLSKDMCDRLDRLNRKFLWQSDPEKSRNLH 568
            W  K LSQAG+  LIK+V+ AIPT++M  F++ K + D ++++ R F W    E+ R + 
Sbjct: 788  WKGKYLSQAGREVLIKAVAQAIPTYAMQCFVIPKSIIDGIEKMCRNFFW-GQKEEERRVA 846

Query: 569  LINWSTICSKKSIGGLGVRSMRLHNIALLSKLCWQLTERSQNQWCTMVKHKYFPNEPFLR 748
             + W  +   K  GGLG+R+  + N ALL+K  W++  +  +    ++K KYFP   FL 
Sbjct: 847  WVAWEKLFLPKKEGGLGIRNFDVFNRALLAKQAWRILTKPDSLMARVIKGKYFPRSNFLE 906

Query: 749  APLKQNASRFWRNLVTVRDEIQRFICWQIKSGRD 850
            A +  N S   +++++ R  IQ+ +C  I  GRD
Sbjct: 907  ARVSPNMSFTCKSILSARAVIQKGMCRVIGDGRD 940


>gb|ABD33126.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
            truncatula]
          Length = 653

 Score =  201 bits (511), Expect = 2e-49
 Identities = 109/272 (40%), Positives = 154/272 (56%)
 Frame = +2

Query: 29   EEKKFIHGVKVGRKCPPVSHLLFADDSFVFFRANLSEAGHVKDLLDLYCAFSGQSINNQK 208
            E    +HGVKV ++ P VSHLLFADDSF+FFRAN +E   +KD+LD Y   S Q IN QK
Sbjct: 251  ERNNILHGVKVCKRAPTVSHLLFADDSFLFFRANENETRALKDILDTYANASDQLINMQK 310

Query: 209  SSLTFSHNLPRRTKKLISDVLNIPVSSRESKYLGIPTNPSKPSKLSFNHIIDRVSSKIEG 388
            S + FS N+P   K  +S++L +       KYLG+P+   +  K  FN+I DR+ ++I G
Sbjct: 311  SEIYFSRNVPVTKKNTLSNMLWVSEGIGIRKYLGLPSMIGRSKKSIFNYIKDRIWNRISG 370

Query: 389  WHSKCLSQAGKLTLIKSVSSAIPTFSMSTFLLSKDMCDRLDRLNRKFLWQSDPEKSRNLH 568
              SK LSQAGK  LIKSV+ AIP++ MS FLL   + D ++++   F W    E    + 
Sbjct: 371  LSSKMLSQAGKEVLIKSVAQAIPSYCMSVFLLPHSIADDIEKMLNSFWWGMKNEGRGGIR 430

Query: 569  LINWSTICSKKSIGGLGVRSMRLHNIALLSKLCWQLTERSQNQWCTMVKHKYFPNEPFLR 748
             ++W  +  +K  GG+G R +   ++A+  K CW            + K KYF NE FL 
Sbjct: 431  WMSWERLTMRKEWGGMGFRHIHGFDLAMSGKQCWNFLTNPDAMVSRIFKAKYFTNENFLG 490

Query: 749  APLKQNASRFWRNLVTVRDEIQRFICWQIKSG 844
            A L  N S  WR++ + R  ++    W+I  G
Sbjct: 491  ASLGHNPSYVWRSIWSSRIFLKTGYQWRIGDG 522


>ref|XP_002454941.1| hypothetical protein SORBIDRAFT_03g001780 [Sorghum bicolor]
            gi|241926916|gb|EES00061.1| hypothetical protein
            SORBIDRAFT_03g001780 [Sorghum bicolor]
          Length = 631

 Score =  198 bits (503), Expect = 1e-48
 Identities = 102/274 (37%), Positives = 161/274 (58%)
 Frame = +2

Query: 29   EEKKFIHGVKVGRKCPPVSHLLFADDSFVFFRANLSEAGHVKDLLDLYCAFSGQSINNQK 208
            E+K  I G+K+ R  P V+HL FADDS +  RA  S+A  ++ +LD+Y   SGQ IN +K
Sbjct: 240  EQKGKIEGIKICRGAPKVNHLFFADDSLILMRARASDALELRRILDVYEKASGQVINKEK 299

Query: 209  SSLTFSHNLPRRTKKLISDVLNIPVSSRESKYLGIPTNPSKPSKLSFNHIIDRVSSKIEG 388
            SS+ FS N  +  + L+   L+I   +   KYLG+P N  K  K  F +I  ++ S+I+G
Sbjct: 300  SSMMFSPNTGQHDRSLMRSNLSITDEASTEKYLGLPVNIGKSRKKPFEYIKKKIWSRIQG 359

Query: 389  WHSKCLSQAGKLTLIKSVSSAIPTFSMSTFLLSKDMCDRLDRLNRKFLWQSDPEKSRNLH 568
            W  K LS+AGK  LIK+V+ +IPT++MS F L+K +CD L  +  ++ W S  +K+  +H
Sbjct: 360  WQEKLLSKAGKEILIKAVAQSIPTYAMSCFDLTKGLCDELSSIIGRY-WWSQQDKANKIH 418

Query: 569  LINWSTICSKKSIGGLGVRSMRLHNIALLSKLCWQLTERSQNQWCTMVKHKYFPNEPFLR 748
             I+W  +   K  GGLG R + L N+A+LS+  W+L     +    ++K +YFP+   L 
Sbjct: 419  WISWEKLTQSKEKGGLGFRDLHLFNLAMLSRQAWRLLTNPDSLCGQVLKARYFPHSDILH 478

Query: 749  APLKQNASRFWRNLVTVRDEIQRFICWQIKSGRD 850
               +   S  WR+++     ++  I W+I +G++
Sbjct: 479  CSPRPRISYTWRSILKGVALLKEGIIWRIGNGKN 512


>emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1355

 Score =  195 bits (495), Expect = 1e-47
 Identities = 98/271 (36%), Positives = 156/271 (57%)
 Frame = +2

Query: 32   EKKFIHGVKVGRKCPPVSHLLFADDSFVFFRANLSEAGHVKDLLDLYCAFSGQSINNQKS 211
            + K +HG K  R  P +SHL FADDS +F RAN  E   + D+L+ Y   SGQ IN +KS
Sbjct: 664  QDKQLHGAKASRSGPEISHLFFADDSLLFTRANRQECTIIVDILNQYELASGQKINYEKS 723

Query: 212  SLTFSHNLPRRTKKLISDVLNIPVSSRESKYLGIPTNPSKPSKLSFNHIIDRVSSKIEGW 391
             +++S  +    K  ++++LN+    R  KYLGIP+   +  K  F+ +IDR+  K++GW
Sbjct: 724  EVSYSRGVSVSQKDELTNILNMRQVDRHEKYLGIPSISGRSKKAIFDSLIDRIWKKLQGW 783

Query: 392  HSKCLSQAGKLTLIKSVSSAIPTFSMSTFLLSKDMCDRLDRLNRKFLWQSDPEKSRNLHL 571
              K LS+AGK  L+KSV  AIPT+ M  +     +  ++     +F W S  +  R +H 
Sbjct: 784  KEKLLSRAGKEVLLKSVIQAIPTYLMGVYKFPVFIIQKIQSAMARFWWGSS-DTQRKIHW 842

Query: 572  INWSTICSKKSIGGLGVRSMRLHNIALLSKLCWQLTERSQNQWCTMVKHKYFPNEPFLRA 751
             NW ++C+ K  GG+G + + + N ALL +  W+LT   Q+    ++K KYFPN  FL A
Sbjct: 843  KNWDSMCNLKCFGGMGFKDLTIFNDALLGRQAWRLTREPQSLLGRVMKAKYFPNCDFLNA 902

Query: 752  PLKQNASRFWRNLVTVRDEIQRFICWQIKSG 844
            PL  ++S  W ++ + +  ++  + W++ +G
Sbjct: 903  PLGHSSSYSWSSIWSSKALLKEGVIWRVGNG 933


>gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1747

 Score =  194 bits (494), Expect = 2e-47
 Identities = 103/274 (37%), Positives = 155/274 (56%)
 Frame = +2

Query: 29   EEKKFIHGVKVGRKCPPVSHLLFADDSFVFFRANLSEAGHVKDLLDLYCAFSGQSINNQK 208
            E ++ IHGV + R  P VSHL +ADDS +F  A +++   +K++   Y A SGQ IN  K
Sbjct: 947  EREQQIHGVAIARGAPSVSHLFYADDSLLFCDATVTDCMALKNIFSTYEAASGQKINKDK 1006

Query: 209  SSLTFSHNLPRRTKKLISDVLNIPVSSRESKYLGIPTNPSKPSKLSFNHIIDRVSSKIEG 388
            S++ FS   P   K+  S +L++PV     +YLG+PT   K  K  F  + DRV +++ G
Sbjct: 1007 SAICFSPKSPAAIKEACSAILDMPVVPCHERYLGLPTVSGKDKKKLFQSLPDRVWNRVHG 1066

Query: 389  WHSKCLSQAGKLTLIKSVSSAIPTFSMSTFLLSKDMCDRLDRLNRKFLWQSDPEKSRNLH 568
            W  K LS+AGK  LIK+V+ AIP ++MS F L     D +++   +F W    E  + +H
Sbjct: 1067 WEGKLLSKAGKEVLIKTVAQAIPNYTMSVFQLPAGTSDAINKCVARFWW--GKEGGKGIH 1124

Query: 569  LINWSTICSKKSIGGLGVRSMRLHNIALLSKLCWQLTERSQNQWCTMVKHKYFPNEPFLR 748
               WS +C  K  GGLG R + L N ALL K  W+L     +    M+K KYFP + F+ 
Sbjct: 1125 WRRWSDLCFSKKDGGLGFRDLSLFNQALLGKQGWRLMMYPDSLVARMLKAKYFPWDDFME 1184

Query: 749  APLKQNASRFWRNLVTVRDEIQRFICWQIKSGRD 850
            A L  + S  WR+ +  R+ +++ + W+I  G++
Sbjct: 1185 AELGSSPSYLWRSFLWGRELLRKGVRWRIGDGKE 1218