BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00019776
         (348 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFK41205.1| unknown [Lotus japonicus]                               71   8e-11
ref|XP_002521367.1| DNA-directed RNA polymerase I 49 kDa polypep...    69   3e-10
emb|CBI35920.3| unnamed protein product [Vitis vinifera]               66   3e-09
ref|XP_002278228.1| PREDICTED: DNA-directed RNA polymerase I sub...    66   3e-09
ref|XP_002884998.1| DNA binding protein [Arabidopsis lyrata subs...    64   1e-08

>gb|AFK41205.1| unknown [Lotus japonicus]
          Length = 347

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 33/56 (58%), Positives = 43/56 (76%)
 Frame = -1

Query: 348 VLALIVDGYRTDMYDIARDLKISVGTVREHYTNLGCKLKLENKTLYATLPVPLEFP 181
           VL L  D +RTD  DI++DL++SV  VR+HY++LGCK   +NK  YATLPVPL+FP
Sbjct: 283 VLTLFSDEFRTDYTDISKDLRMSVLLVRQHYSDLGCKFLSQNKISYATLPVPLKFP 338


>ref|XP_002521367.1| DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus
           communis] gi|223539445|gb|EEF41035.1| DNA-directed RNA
           polymerase I 49 kDa polypeptide, putative [Ricinus
           communis]
          Length = 481

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 33/56 (58%), Positives = 41/56 (73%)
 Frame = -1

Query: 348 VLALIVDGYRTDMYDIARDLKISVGTVREHYTNLGCKLKLENKTLYATLPVPLEFP 181
           VL+L  D +RTD  DIA+DL++S   VR H+ NLGCK+  ENK   ATLPVPL+FP
Sbjct: 417 VLSLYADDFRTDPTDIAKDLRVSRVMVRTHFENLGCKIVCENKLSLATLPVPLKFP 472


>emb|CBI35920.3| unnamed protein product [Vitis vinifera]
          Length = 391

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 32/56 (57%), Positives = 39/56 (69%)
 Frame = -1

Query: 348 VLALIVDGYRTDMYDIARDLKISVGTVREHYTNLGCKLKLENKTLYATLPVPLEFP 181
           VL L  D +RTD  DIARDL++S   +R H+ +LGCKL  +NK   ATLPVPL FP
Sbjct: 328 VLTLYADEFRTDPSDIARDLRMSAVKLRAHFEHLGCKLVSQNKVTMATLPVPLTFP 383


>ref|XP_002278228.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49 [Vitis
           vinifera]
          Length = 421

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 32/56 (57%), Positives = 39/56 (69%)
 Frame = -1

Query: 348 VLALIVDGYRTDMYDIARDLKISVGTVREHYTNLGCKLKLENKTLYATLPVPLEFP 181
           VL L  D +RTD  DIARDL++S   +R H+ +LGCKL  +NK   ATLPVPL FP
Sbjct: 358 VLTLYADEFRTDPSDIARDLRMSAVKLRAHFEHLGCKLVSQNKVTMATLPVPLTFP 413


>ref|XP_002884998.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
           gi|297330838|gb|EFH61257.1| DNA binding protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 443

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 30/56 (53%), Positives = 39/56 (69%)
 Frame = -1

Query: 348 VLALIVDGYRTDMYDIARDLKISVGTVREHYTNLGCKLKLENKTLYATLPVPLEFP 181
           VL+L VD ++TD  DIA+DL+IS   +R+H+  LGCK   +N T  ATLP PL FP
Sbjct: 378 VLSLHVDNFKTDPEDIAKDLRISTVELRKHFQQLGCKFVKQNSTWVATLPTPLNFP 433