BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00019690
         (647 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267973.1| PREDICTED: pentatricopeptide repeat-containi...    88   2e-15
emb|CAN60262.1| hypothetical protein VITISV_020169 [Vitis vinifera]    88   2e-15
emb|CBI29649.3| unnamed protein product [Vitis vinifera]               87   3e-15
ref|XP_003630728.1| Pentatricopeptide repeat-containing protein ...    69   1e-09
ref|XP_002331124.1| predicted protein [Populus trichocarpa] gi|2...    67   3e-09

>ref|XP_002267973.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g10270-like [Vitis vinifera]
          Length = 627

 Score = 87.8 bits (216), Expect = 2e-15
 Identities = 57/161 (35%), Positives = 80/161 (49%), Gaps = 10/161 (6%)
 Frame = +2

Query: 14  DVTTYTILFDAYFKQERIRDVLKWFRHLVLKTTFEPSFALVNSVFSRLINKGMIEEAGEI 193
           DV  Y    +AYF  ER  D L+ F   V  +      +  N VF  L+NKG   +AGE 
Sbjct: 425 DVNIYRTFIEAYFGMERADDALQMFNRFV-DSGLRVIVSFANKVFDELVNKG---KAGEC 480

Query: 194 LERMTQGGRQKPFLVATSYELVLTESCKQGKLDLVQHLLGVMLLFNIGATPKLHGIVRDA 373
           +  +T+ G + P    T+YE+V+   CK+   D  + L+G M+ +NIG TP L   V +A
Sbjct: 481 VPVLTKMGEKDPKPDPTTYEIVIKGLCKERLFDASRDLMGQMVRYNIGVTPSLREFVVEA 540

Query: 374 FGKEDRVDQIESKL----------WQLTEPRYIWDFPRCAG 466
           FGKE R ++IE  L          W  + P  +   PR AG
Sbjct: 541 FGKEGRSEEIERLLEANRPGFGAYWPPSGPPRMAGPPRMAG 581


>emb|CAN60262.1| hypothetical protein VITISV_020169 [Vitis vinifera]
          Length = 627

 Score = 87.8 bits (216), Expect = 2e-15
 Identities = 57/161 (35%), Positives = 80/161 (49%), Gaps = 10/161 (6%)
 Frame = +2

Query: 14  DVTTYTILFDAYFKQERIRDVLKWFRHLVLKTTFEPSFALVNSVFSRLINKGMIEEAGEI 193
           DV  Y    +AYF  ER  D L+ F   V  +      +  N VF  L+NKG   +AGE 
Sbjct: 425 DVNIYRTFIEAYFGMERADDALQMFNRFV-DSGLRVIVSFANKVFDELVNKG---KAGEC 480

Query: 194 LERMTQGGRQKPFLVATSYELVLTESCKQGKLDLVQHLLGVMLLFNIGATPKLHGIVRDA 373
           +  +T+ G + P    T+YE+V+   CK+   D  + L+G M+ +NIG TP L   V +A
Sbjct: 481 VPVLTKMGEKDPKPDPTTYEIVIKGLCKERLFDASRDLMGQMVRYNIGVTPSLREFVVEA 540

Query: 374 FGKEDRVDQIESKL----------WQLTEPRYIWDFPRCAG 466
           FGKE R ++IE  L          W  + P  +   PR AG
Sbjct: 541 FGKEGRSEEIERLLEANRPGFGAYWPPSGPPRMAGPPRMAG 581


>emb|CBI29649.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score = 87.0 bits (214), Expect = 3e-15
 Identities = 51/134 (38%), Positives = 72/134 (53%)
 Frame = +2

Query: 14  DVTTYTILFDAYFKQERIRDVLKWFRHLVLKTTFEPSFALVNSVFSRLINKGMIEEAGEI 193
           DV  Y    +AYF  ER  D L+ F   V  +      +  N VF  L+NKG   +AGE 
Sbjct: 425 DVNIYRTFIEAYFGMERADDALQMFNRFV-DSGLRVIVSFANKVFDELVNKG---KAGEC 480

Query: 194 LERMTQGGRQKPFLVATSYELVLTESCKQGKLDLVQHLLGVMLLFNIGATPKLHGIVRDA 373
           +  +T+ G + P    T+YE+V+   CK+   D  + L+G M+ +NIG TP L   V +A
Sbjct: 481 VPVLTKMGEKDPKPDPTTYEIVIKGLCKERLFDASRDLMGQMVRYNIGVTPSLREFVVEA 540

Query: 374 FGKEDRVDQIESKL 415
           FGKE R ++IE  L
Sbjct: 541 FGKEGRSEEIERLL 554


>ref|XP_003630728.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355524750|gb|AET05204.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 918

 Score = 68.6 bits (166), Expect = 1e-09
 Identities = 45/135 (33%), Positives = 65/135 (48%)
 Frame = +2

Query: 11  ADVTTYTILFDAYFKQERIRDVLKWFRHLVLKTTFEPSFALVNSVFSRLINKGMIEEAGE 190
           ADV T+T + D Y K   I D L+ F  +V +     +    N VF  LI  G + E  +
Sbjct: 406 ADVPTHTAMIDGYLKVGNIDDALRVFNKMVDRG-LRVTATFGNRVFDELIKNGKVIECAQ 464

Query: 191 ILERMTQGGRQKPFLVATSYELVLTESCKQGKLDLVQHLLGVMLLFNIGATPKLHGIVRD 370
           IL +M   G Q P    T YE+V+   C +G LD  + LL  ++ + +G TP L   V  
Sbjct: 465 ILSKM---GGQDPKPDPTCYEVVIKGLCAEGLLDKSRELLDEVMRYGVGVTPALRESVTK 521

Query: 371 AFGKEDRVDQIESKL 415
            F    + ++IE  L
Sbjct: 522 VFKNAGKGEEIERLL 536


>ref|XP_002331124.1| predicted protein [Populus trichocarpa] gi|222872852|gb|EEF09983.1|
           predicted protein [Populus trichocarpa]
          Length = 832

 Score = 67.0 bits (162), Expect = 3e-09
 Identities = 48/151 (31%), Positives = 72/151 (47%), Gaps = 9/151 (5%)
 Frame = +2

Query: 14  DVTTYTILFDAYFKQERIRDVLKWFRHLVLKTTFEPSFALVNS----VFSRLINKGMIEE 181
           DV T+  L DAY K+E I DVL+      L    +    +V S    VF  LI  G   E
Sbjct: 435 DVVTFRTLIDAYLKREEIDDVLR-----TLNKMADAGLRVVASFGTRVFGELIKNGKEVE 489

Query: 182 AGEILERMTQGGRQKPFLVATSYELVLTESCKQGKLDLVQHLLGVMLLFNIGATPKLHGI 361
           + EIL +M   G + P   ++ Y++V+   C  G+LD  + +L  M+ + +G  P L   
Sbjct: 490 SAEILTKM---GNKDPKPDSSIYDVVVRGLCSAGELDASKDMLDQMIKYGVGIPPALKEF 546

Query: 362 VRDAFGKEDRVDQI-----ESKLWQLTEPRY 439
           + + FG   R  +I     ESK   ++ P Y
Sbjct: 547 LIEVFGNAGRASEIKSVLDESKWINISRPAY 577